Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Forward (+)

2979623 .. 2983117

Gene Structure 3495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCGAAATTTGTTCGGCGGAGCGACCCAAATTCTGAGCAAATCGTCGTCCGCTTTCTTCTTCCTCAATCCAAATTCGAAGCTCTCTCTTTGCAAACCATCCAAATCCCCTCGCCTTCTCCGCACCTTCGCGATCATGGCCTCCGCCGACGAGTTCGTCAAGGGGAGCGTCCACCCAAATGGCGTCGCCGTCATCACCCTCGATCGTCCTCGAGCACTCAACGCCATGAACCTGGATATGGATGTGAAATACAAGACCTATCTGGATGAATGGGAATCTGACCCAAATGTGAAGTGTGTTCTTGTTGATAGCAGCTCGGCTCGTGCCTTTTGTGCGGGAATGGATATTAAAGGGGTTGTTGCCGAAATTCAAAAGGACAAAAACACACCTCTTGTGCCTAAGGTATTCACTGCTGAGTATTCTCTAATATGCAAAATCTCTGAGTACAAGAAGCCCTATGTAAGCTTCATGGATGGCATAACAATGGGCTTTGGTATTGGCCTATCAGGTCATGGTCGCTACCGATCGATCATTACAGAGAGGACTGTTCTTGCCATGCCAGAGAATGGAATTGGTTTGTTCCCGGATGTTGGGTTTTCACATATAGCGGCTAAGAGTCCAGGAGGAGGATCTGTAGGTGCTTATCTTGGACTTACTGGGAAAAGGATTTCAACACCATCGGATGCACTATATGTGGGTCTTGGGACACATTTTGTCCCATCTCAAAACTTAGGTTCTCTAAAGGAGGCCCTTTTGTCTACCAAATTTTCTCAGGATCCCCATCAGGACATTGAAACAGCTGTGGCGAAATTCAGCGGCAACCCAGATTCTGAAGCGCAACTCAAGAGTCTTTTACCTCAAATAACTTCAGCATTTGGTGCAAATAAGTCGGTTCTTGAGACAATTGATGAGCTTAAAAAGCAGCAGCAGAGTTCAGATGCTACTGTGGTGGAGTGGGCTAATGAAGCTCTTCAAGGTCTTGGAAAGGGTGCTCCTTTTTCACTTTATTTGACACAAAATTATTTCTCCAAAGTTTCATCTGCGCTTGGGAAAAATGACAATCAATTATCCACATTAACTGGTGTGATGAAAACTGAATATCGTGTTGCTATAAGATCGTCTTTGCGGAATGATTTTGCTGAAGGTGTGCGGGCAGTTTTGGTGGACAAGGATCAGAATCCAAAGTGGAACCCGGCAAAGTTAGAGGAGGTGAATCAGAGTGAAGTGGAAGCTCTCTTCGAGCCATTGAGCCCGAACATTGAGGAGTTGAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

426

Amino Acids

46.1

Weight (kDa)

6.97

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	59 - 248	1.1e-21	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	63 - 413	4.3e-104	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	758
AccII	CGCG	1 cut(s)	131
AciI	CCGC	9 cut(s)	18, 51, 121, 144, 335, 608, 816, 1126, 1150
AclWI	GGATC	4 cut(s)	637, 770, 783, 1179
AcsI	RAATTY	6 cut(s)	7, 30, 73, 366, 764, 809
AcuI	CTGAAG	3 cut(s)	852, 852, 1161
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	4 cut(s)	238, 566, 590, 626
AgsI	TTSAA	4 cut(s)	371, 672, 794, 974
AjnI	CCWGG	2 cut(s)	231, 619
AluBI	AGCT	7 cut(s)	82, 315, 465, 800, 913, 968, 1232
AluI	AGCT	7 cut(s)	82, 315, 465, 800, 913, 968, 1232
Alw21I	GWGCWC	2 cut(s)	217, 994
Alw26I	GTCTC	1 cut(s)	893
AlwI	GGATC	4 cut(s)	637, 770, 783, 1179
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	3 cut(s)	138, 499, 747
ApeKI	GCWGC	3 cut(s)	312, 922, 925
ApoI	RAATTY	6 cut(s)	7, 30, 73, 366, 764, 809
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	2 cut(s)	838, 1045
AspS9I	GGNCC	1 cut(s)	748
AsuC2I	CCSGG	2 cut(s)	584, 1193
AsuHPI	GGTGA	2 cut(s)	187, 1222
AsuII	TTCGAA	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	210
AxyI	CCTNAGG	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	1253
BauI	CACGAG	1 cut(s)	321
Bbv12I	GWGCWC	2 cut(s)	217, 994
BbvI	GCAGC	3 cut(s)	324, 934, 937
BccI	CCATC	5 cut(s)	106, 467, 685, 727, 789
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	870, 904
BciT130I	CCWGG	2 cut(s)	233, 621
BcnI	CCSGG	2 cut(s)	584, 1193
BcoDI	GTCTC	1 cut(s)	893
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	5 cut(s)	313, 609, 817, 923, 926
BlsI	GCNGC	5 cut(s)	314, 610, 818, 924, 927
Bme1390I	CCNGG	4 cut(s)	233, 584, 621, 1193
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	748
BmiI	GGNNCC	2 cut(s)	777, 1190
BmrFI	CCNGG	4 cut(s)	233, 584, 621, 1193
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	673, 928
BmuI	ACTGGG	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	827, 917
BpuMI	CCSGG	2 cut(s)	584, 1193
Bsa29I	ATCGAT	1 cut(s)	527
BsaBI	GATNNNNATC	2 cut(s)	780, 1176
BsaHI	GRCGYC	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 566, 590, 626
Bse1I	ACTGG	2 cut(s)	661, 1084
Bse21I	CCTNAGG	1 cut(s)	399
Bse8I	GATNNNNATC	2 cut(s)	780, 1176
BseBI	CCWGG	2 cut(s)	233, 621
BseCI	ATCGAT	1 cut(s)	527
BseGI	GGATG	6 cut(s)	98, 247, 271, 478, 592, 688
BseJI	GATNNNNATC	2 cut(s)	780, 1176
BseLI	CCNNNNNNNGG	4 cut(s)	238, 566, 590, 626
BseMII	CTCAG	4 cut(s)	26, 405, 432, 785
BseNI	ACTGG	2 cut(s)	661, 1084
BseRI	GAGGAG	3 cut(s)	639, 1220, 1277
BseXI	GCAGC	3 cut(s)	324, 934, 937
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	2 cut(s)	205, 527
BshFI	GGCC	3 cut(s)	140, 501, 749
BshVI	ATCGAT	1 cut(s)	527
BsiEI	CGRYCG	2 cut(s)	205, 527
BsiHKAI	GWGCWC	2 cut(s)	217, 994
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	584, 1193
BslFI	GGGAC	2 cut(s)	701, 718
BslI	CCNNNNNNNGG	4 cut(s)	238, 566, 590, 626
BsmAI	GTCTC	1 cut(s)	893
BsmFI	GGGAC	2 cut(s)	701, 718
BsnI	GGCC	3 cut(s)	140, 501, 749
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	217, 994, 1253
Bsp143I	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
Bsp68I	TCGCGA	1 cut(s)	131
BspACI	CCGC	9 cut(s)	18, 51, 121, 144, 335, 608, 816, 1126, 1150
BspANI	GGCC	3 cut(s)	140, 501, 749
BspCNI	CTCAG	4 cut(s)	27, 406, 433, 784
BspDI	ATCGAT	1 cut(s)	527
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	777, 1190
BspPI	GGATC	4 cut(s)	637, 770, 783, 1179
BspQI	GCTCTTC	1 cut(s)	975
BspT104I	TTCGAA	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	661, 1084
BssMI	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	233, 621
Bst4CI	ACNGT	2 cut(s)	547, 946
Bst6I	CTCTTC	2 cut(s)	975, 1241
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	1152
BstDEI	CTNAG	7 cut(s)	35, 399, 414, 441, 612, 730, 771
BstF5I	GGATG	6 cut(s)	98, 247, 271, 478, 592, 688
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	838, 1045
BstKTI	GATC	8 cut(s)	135, 205, 527, 531, 632, 778, 1118, 1174
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
BstMCI	CGRYCG	2 cut(s)	205, 527
BstMWI	GCNNNNNNNGC	7 cut(s)	120, 137, 221, 332, 878, 919, 965
BstNI	CCWGG	2 cut(s)	233, 621
BstSCI	CCNGG	4 cut(s)	231, 582, 619, 1191
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	324, 934, 937
BstX2I	RGATCY	2 cut(s)	629, 775
BstXI	CCANNNNNNTGG	2 cut(s)	179, 232
BstYI	RGATCY	2 cut(s)	629, 775
Bsu15I	ATCGAT	1 cut(s)	527
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	140, 501, 749
BsuTUI	ATCGAT	1 cut(s)	527
BtsCI	GGATG	6 cut(s)	98, 247, 271, 478, 592, 688
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
BtuMI	TCGCGA	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	1152
CaiI	CAGNNNCTG	1 cut(s)	830
CfoI	GCGC	2 cut(s)	838, 1045
Cfr13I	GGNCC	1 cut(s)	748
ClaI	ATCGAT	1 cut(s)	527
CseI	GACGC	2 cut(s)	157, 172
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	5 cut(s)	136, 226, 469, 512, 556
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	7 cut(s)	35, 399, 414, 441, 612, 730, 771
DpnI	GATC	8 cut(s)	134, 204, 526, 530, 631, 777, 1117, 1173
DpnII	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	975, 1241
EarI	CTCTTC	2 cut(s)	975, 1241
EciI	GGCGGA	2 cut(s)	33, 133
Eco24I	GRGCYC	1 cut(s)	1253
Eco57I	CTGAAG	3 cut(s)	852, 852, 1161
Eco81I	CCTNAGG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	231, 619
EcoT38I	GRGCYC	1 cut(s)	1253
FaeI	CATG	5 cut(s)	139, 229, 472, 515, 559
FalI	AAGNNNNNCTT	2 cut(s)	1105, 1137
FaqI	GGGAC	2 cut(s)	701, 718
FatI	CATG	5 cut(s)	135, 225, 468, 511, 555
FauI	CCCGC	2 cut(s)	328, 1143
FblI	GTMKAC	1 cut(s)	758
Fnu4HI	GCNGC	5 cut(s)	313, 609, 817, 923, 926
FokI	GGATG	6 cut(s)	85, 254, 278, 485, 599, 695
FriOI	GRGCYC	1 cut(s)	1253
Fsp4HI	GCNGC	5 cut(s)	313, 609, 817, 923, 926
GlaI	GCGC	2 cut(s)	837, 1044
GluI	GCNGC	5 cut(s)	313, 609, 817, 923, 926
HaeIII	GGCC	3 cut(s)	140, 501, 749
HapII	CCGG	2 cut(s)	584, 1193
HgaI	GACGC	2 cut(s)	157, 172
HhaI	GCGC	2 cut(s)	838, 1045
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	139, 229, 472, 515, 559
Hin6I	GCGC	2 cut(s)	836, 1043
HinP1I	GCGC	2 cut(s)	836, 1043
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	6 cut(s)	275, 616, 827, 847, 1177, 1213
HpaII	CCGG	2 cut(s)	584, 1193
HphI	GGTGA	2 cut(s)	187, 1222
Hpy166II	GTNNAC	3 cut(s)	172, 759, 1165
Hpy188I	TCNGA	8 cut(s)	36, 280, 442, 682, 832, 937, 1176, 1218
Hpy188III	TCNNGA	6 cut(s)	130, 263, 773, 785, 844, 896
Hpy8I	GTNNAC	3 cut(s)	172, 759, 1165
Hpy99I	CGWCG	3 cut(s)	49, 152, 188
HpyAV	CCTTC	3 cut(s)	125, 136, 1136
HpyCH4III	ACNGT	2 cut(s)	547, 946
HpyCH4V	TGCA	4 cut(s)	93, 432, 686, 881
HpyF10VI	GCNNNNNNNGC	7 cut(s)	120, 137, 221, 332, 878, 919, 965
HpyF3I	CTNAG	7 cut(s)	35, 399, 414, 441, 612, 730, 771
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	139, 229, 472, 515, 559
HspAI	GCGC	2 cut(s)	836, 1043
Kzo9I	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	3 cut(s)	20, 165, 997
Lsp1109I	GCAGC	3 cut(s)	324, 934, 937
LweI	GCATC	2 cut(s)	673, 928
MalI	GATC	8 cut(s)	134, 204, 526, 530, 631, 777, 1117, 1173
MboI	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
MboII	GAAGA	4 cut(s)	49, 52, 962, 1228
MfeI	CAATTG	1 cut(s)	903
MflI	RGATCY	2 cut(s)	629, 775
MhlI	GDGCHC	3 cut(s)	217, 994, 1253
MlyI	GAGTC	2 cut(s)	625, 856
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	3 cut(s)	348, 915, 1076
MslI	CAYNNNNRTG	2 cut(s)	177, 482
MspA1I	CMGCKG	2 cut(s)	800, 816
MspI	CCGG	2 cut(s)	584, 1193
MspR9I	CCNGG	4 cut(s)	233, 584, 621, 1193
MunI	CAATTG	1 cut(s)	903
MvaI	CCWGG	2 cut(s)	233, 621
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	7 cut(s)	120, 137, 221, 332, 878, 919, 965
NciI	CCSGG	2 cut(s)	584, 1193
NdeII	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
NlaIII	CATG	5 cut(s)	139, 229, 472, 515, 559
NlaIV	GGNNCC	2 cut(s)	777, 1190
NmeAIII	GCCGAG	1 cut(s)	296
NruI	TCGCGA	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	975
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	4 cut(s)	275, 827, 1177, 1213
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	2 cut(s)	582, 619
PkrI	GCNGC	5 cut(s)	314, 610, 818, 924, 927
Ple19I	CGATCG	2 cut(s)	205, 527
PleI	GAGTC	2 cut(s)	624, 855
PpsI	GAGTC	2 cut(s)	624, 855
Psp6I	CCWGG	2 cut(s)	231, 619
PspGI	CCWGG	2 cut(s)	231, 619
PspN4I	GGNNCC	2 cut(s)	777, 1190
PspPI	GGNCC	1 cut(s)	748
PspXI	VCTCGAGB	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	629, 775
PvuI	CGATCG	2 cut(s)	205, 527
PvuII	CAGCTG	1 cut(s)	800
RruI	TCGCGA	1 cut(s)	131
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	177, 482
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	3 cut(s)	348, 915, 1076
SatI	GCNGC	5 cut(s)	313, 609, 817, 923, 926
Sau3AI	GATC	8 cut(s)	132, 202, 524, 528, 629, 775, 1115, 1171
Sau96I	GGNCC	1 cut(s)	748
SchI	GAGTC	2 cut(s)	625, 856
ScrFI	CCNGG	4 cut(s)	233, 584, 621, 1193
SduI	GDGCHC	3 cut(s)	217, 994, 1253
SfaNI	GCATC	2 cut(s)	673, 928
SfcI	CTRYAG	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	177, 482
SmlI	CTYRAG	3 cut(s)	210, 842, 896
SmoI	CTYRAG	3 cut(s)	210, 842, 896
SsiI	CCGC	9 cut(s)	18, 51, 121, 144, 335, 608, 816, 1126, 1150
StyD4I	CCNGG	4 cut(s)	231, 582, 619, 1191
TaaI	ACNGT	2 cut(s)	547, 946
TaqI	TCGA	5 cut(s)	77, 201, 211, 527, 1239
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	611, 819
TfiI	GAWTC	4 cut(s)	275, 827, 1177, 1213
Tru1I	TTAA	3 cut(s)	348, 915, 1076
Tru9I	TTAA	3 cut(s)	348, 915, 1076
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	3 cut(s)	312, 922, 925
TspDTI	ATGAA	6 cut(s)	242, 282, 457, 978, 1026, 1103
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	566
XapI	RAATTY	6 cut(s)	7, 30, 73, 366, 764, 809
XhoI	CTCGAG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	758
XmnI	GAANNNNTTC	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.