Rroxscaffold_2G00150670

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
88030781 .. 88034134
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150670.1

Sequence Viewer

Length: 1341 bp
ATGCGAAGCTTTTTCGGAGCGACCCAAATTCTGAGCAAGTCTTCATCTTTCTTCCTACCCACAAATCCCAACCTCTCCTTCTCCAAAACCCCCATCTTCCTCCGAACCTTCGCGATCATGGCCACCGCCGCCGACGAGCTCGTCAAGGGCGCCGTTCACCCAAACGGCGTCGCTGTGATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACATAGATATGGATTTGAAATTCAAGAGCTATCTGGATCAGTGGGAATCGGACCCGAATGTGAAGTGTGTTTTTGTCGATAGCAGCTCAGCTCGTGCCTTTTGTGCTGGTAACAATGGAGATTTGAGTTTTAGGCTTTACTTGTTAATGGTGCAAGATTTTGAGAGTTACGAAATCGCGGTAAATGCAGGAATGGATATTAAAGGGGTTGTTGCTGAAATTCAAAAGGACAAGAACACACCTCTTGTGCCCAAGGTATTCACTGCTGAGTATTCTTTGATATGCAAAATATCTAACTACAAGAAGCCGTATGTAAGTTTCATGGATGGCATAACAATGGGCTTTGGAATTGGCCTATCAGGTCATGGTCACTACCGGATCATTACAGAGAGGACTCTTCTTGCTATGCCAGAAAATGGTATTGGATTGTTTCCAGACGTTGGCTTTTCACATATAGCGGCACAGAGTCCAGGAGGAGGATCAGTTGGTGCTTATCTTGGAATCACTGGGAAAAGAATTTTGACGCCATCGGATGCACTCTATGTAGGTCTTGGGACACATTTTGTGCCATCTCAAAACTTAGGTTCAGTAAAGGAGGCCCTTTTGTCAACTAACTTTTCCCAGGATCCTCATGAGAACATCAAAACGATTTTGGCGAAGTTCAGCAGTAAACCTGATTCCGAATCCCAACTGAAGCAGCTTTTACCTCAAATAGCCTCATCATTTGGTGCAAATAAGTCAGTTATTGGGACAATTGAAGAACTCAAAAAGCATCAATCGAGTTCAGATGCTACTGTGGTGGAGTGGGCTAATGAAGCTCTTCAAGGTCTTGGAAAGGGTGCTCCTTTTTCACTTTTCTTGACACAGAAGTATTTCTCCAAAGTTGCATCTGCCCTTGGGAAGAATGACAATCAATTATCCACACTGACTGGTGTCATGAAAACTGAATATCGCATTGCTGTAAGATCATCCTTGCGTAATGACTTTGCTGAAGGTGTGCGGGCAGTGTTGGTGGACAAGGATCAGAATCCAAAGTGGAACCCGTCAAAGTTGGAGGAAGTTAATGAGAACGAAGTGGAAGCTCTGTTTGAACCATTGAGCCCAAATGTGGAGGAGTTGAGCGTGTGA

Protein Analysis

446

Amino Acids

48.56

Weight (kDa)

6.21

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 54 - 109 2.5e-08 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 58 - 109 1.4e-14 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 128 - 295 2.4e-08 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 131 - 434 1.2e-83 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 2 cut(s) 629, 653
AccII CGCG 2 cut(s) 113, 392
AciI CCGC 5 cut(s) 126, 129, 392, 671, 1213
AclWI GGATC 6 cut(s) 258, 599, 700, 833, 846, 1242
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 4 cut(s) 27, 233, 432, 729
AcuI CTGAAG 2 cut(s) 926, 1224
AcyI GRCGYC 3 cut(s) 150, 168, 737
AfiI CCNNNNNNNGG 4 cut(s) 629, 653, 689, 1321
AgsI TTSAA 6 cut(s) 232, 238, 437, 971, 1037, 1304
AjnI CCWGG 2 cut(s) 682, 834
AjuI GAANNNNNNNTTGG 4 cut(s) 62, 94, 618, 650
AluBI AGCT 9 cut(s) 9, 139, 200, 243, 300, 305, 913, 1031, 1295
AluI AGCT 9 cut(s) 9, 139, 200, 243, 300, 305, 913, 1031, 1295
Alw21I GWGCWC 2 cut(s) 141, 1057
AlwI GGATC 6 cut(s) 258, 599, 700, 833, 846, 1242
AoxI GGCC 3 cut(s) 120, 565, 810
ApeKI GCWGC 2 cut(s) 297, 910
ApoI RAATTY 4 cut(s) 27, 233, 432, 729
Asp700I GAANNNNTTC 2 cut(s) 1032, 1085
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 265, 811
AsuHPI GGTGA 2 cut(s) 149, 172
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 838
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 141, 1316
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 141, 1057
BbvI GCAGC 2 cut(s) 309, 922
BccI CCATC 4 cut(s) 101, 533, 748, 790
BceAI ACGGC 3 cut(s) 137, 181, 505
BciT130I CCWGG 2 cut(s) 684, 836
BclI TGATCA 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 4 cut(s) 129, 298, 672, 911
BlpI GCTNAGC 1 cut(s) 301
BlsI GCNGC 4 cut(s) 130, 299, 673, 912
Bme1390I CCNGG 2 cut(s) 684, 836
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 265, 811
BmiI GGNNCC 4 cut(s) 151, 267, 840, 1253
BmrFI CCNGG 2 cut(s) 684, 836
BmrI ACTGGG 1 cut(s) 729
BmsI GCATC 4 cut(s) 736, 991, 994, 1109
BmuI ACTGGG 1 cut(s) 729
BoxI GACNNNNGTC 1 cut(s) 1145
BpiI GAAGAC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 1239
BsaHI GRCGYC 3 cut(s) 150, 168, 737
BsaJI CCNNGG 3 cut(s) 465, 834, 1108
BsaWI WCCGGW 1 cut(s) 588
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 4 cut(s) 629, 653, 689, 1321
Bse1I ACTGG 2 cut(s) 724, 1147
Bse3DI GCAATG 1 cut(s) 1167
Bse8I GATNNNNATC 1 cut(s) 1239
BseBI CCWGG 2 cut(s) 684, 836
BseDI CCNNGG 3 cut(s) 465, 834, 1108
BseGI GGATG 3 cut(s) 544, 751, 1181
BseJI GATNNNNATC 1 cut(s) 1239
BseLI CCNNNNNNNGG 4 cut(s) 629, 653, 689, 1321
BseMI GCAATG 1 cut(s) 1167
BseMII CTCAG 3 cut(s) 23, 315, 471
BseNI ACTGG 2 cut(s) 724, 1147
BseRI GAGGAG 2 cut(s) 702, 1340
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 2 cut(s) 309, 922
Bsh1236I CGCG 2 cut(s) 113, 392
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 3 cut(s) 122, 567, 812
BshNI GGYRCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 141, 1057
BsiSI CCGG 1 cut(s) 589
BslFI GGGAC 2 cut(s) 781, 976
BslI CCNNNNNNNGG 4 cut(s) 629, 653, 689, 1321
BsmFI GGGAC 2 cut(s) 781, 976
BsnI GGCC 3 cut(s) 122, 567, 812
Bsp1286I GDGCHC 4 cut(s) 141, 465, 1057, 1316
Bsp143I GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
Bsp1720I GCTNAGC 1 cut(s) 301
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 5 cut(s) 126, 129, 392, 671, 1213
BspANI GGCC 3 cut(s) 122, 567, 812
BspCNI CTCAG 3 cut(s) 24, 314, 472
BspFNI CGCG 2 cut(s) 113, 392
BspHI TCATGA 2 cut(s) 844, 1149
BspLI GGNNCC 4 cut(s) 151, 267, 840, 1253
BspPI GGATC 6 cut(s) 258, 599, 700, 833, 846, 1242
BspQI GCTCTTC 1 cut(s) 1038
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 1167
BsrI ACTGG 2 cut(s) 724, 1147
BssECI CCNNGG 3 cut(s) 465, 834, 1108
BssMI GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
BssNI GRCGYC 3 cut(s) 150, 168, 737
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 2 cut(s) 465, 1108
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 684, 836
Bst4CI ACNGT 1 cut(s) 1009
Bst6I CTCTTC 2 cut(s) 615, 1038
BstACI GRCGYC 3 cut(s) 150, 168, 737
BstC8I GCNNGC 1 cut(s) 1215
BstDEI CTNAG 4 cut(s) 32, 301, 480, 793
BstF5I GGATG 3 cut(s) 544, 751, 1181
BstFNI CGCG 2 cut(s) 113, 392
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 9 cut(s) 117, 180, 190, 253, 594, 695, 841, 1181, 1237
BstMBI GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 6 cut(s) 119, 128, 206, 317, 398, 1028
BstNI CCWGG 2 cut(s) 684, 836
BstPAI GACNNNNGTC 1 cut(s) 1145
BstSCI CCNGG 2 cut(s) 682, 834
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 2 cut(s) 113, 392
BstV1I GCAGC 2 cut(s) 309, 922
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 3 cut(s) 122, 567, 812
BtsCI GGATG 3 cut(s) 544, 751, 1181
BtsI GCAGTG 2 cut(s) 474, 1224
BtsIMutI CAGTG 5 cut(s) 260, 474, 717, 1136, 1224
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 1215
CciI TCATGA 2 cut(s) 844, 1149
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 265, 811
CseI GACGC 2 cut(s) 157, 745
CviAII CATG 6 cut(s) 118, 211, 535, 578, 845, 1150
DdeI CTNAG 4 cut(s) 32, 301, 480, 793
DinI GGCGCC 1 cut(s) 151
DpnI GATC 9 cut(s) 116, 179, 189, 252, 593, 694, 840, 1180, 1236
DpnII GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 615, 1038
EarI CTCTTC 2 cut(s) 615, 1038
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 465, 1108
Eco24I GRGCYC 2 cut(s) 141, 1316
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 926, 1224
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 811
EcoRII CCWGG 2 cut(s) 682, 834
EcoT14I CCWWGG 2 cut(s) 465, 1108
EcoT38I GRGCYC 2 cut(s) 141, 1316
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 465, 1108
FaeI CATG 6 cut(s) 121, 214, 538, 581, 848, 1153
FaqI GGGAC 2 cut(s) 781, 976
FatI CATG 6 cut(s) 117, 210, 534, 577, 844, 1149
FauI CCCGC 1 cut(s) 1206
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 129, 298, 672, 911
FokI GGATG 3 cut(s) 551, 758, 1168
FriOI GRGCYC 2 cut(s) 141, 1316
Fsp4HI GCNGC 4 cut(s) 129, 298, 672, 911
GlaI GCGC 1 cut(s) 151
GluI GCNGC 4 cut(s) 129, 298, 672, 911
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 122, 567, 812
HapII CCGG 1 cut(s) 589
HgaI GACGC 2 cut(s) 157, 745
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 3 cut(s) 150, 168, 737
Hin1II CATG 6 cut(s) 121, 214, 538, 581, 848, 1153
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 7 cut(s) 260, 607, 679, 714, 890, 896, 1240
HpaII CCGG 1 cut(s) 589
HphI GGTGA 2 cut(s) 149, 172
Hpy166II GTNNAC 4 cut(s) 157, 822, 884, 1228
Hpy188I TCNGA 8 cut(s) 17, 33, 104, 265, 745, 895, 1000, 1239
Hpy188III TCNNGA 7 cut(s) 112, 238, 248, 647, 845, 1072, 1150
Hpy8I GTNNAC 4 cut(s) 157, 822, 884, 1228
Hpy99I CGWCG 2 cut(s) 137, 173
HpyAV CCTTC 3 cut(s) 88, 118, 1199
HpyCH4III ACNGT 1 cut(s) 1009
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 6 cut(s) 367, 401, 498, 749, 944, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 128, 206, 317, 398, 1028
HpyF3I CTNAG 4 cut(s) 32, 301, 480, 793
HpySE526I ACGT 1 cut(s) 651
Hsp92I GRCGYC 3 cut(s) 150, 168, 737
Hsp92II CATG 6 cut(s) 121, 214, 538, 581, 848, 1153
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 2 cut(s) 17, 1060
Lsp1109I GCAGC 2 cut(s) 309, 922
LweI GCATC 4 cut(s) 736, 991, 994, 1109
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 323, 380, 581
MalI GATC 9 cut(s) 116, 179, 189, 252, 593, 694, 840, 1180, 1236
MboI GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
MboII GAAGA 7 cut(s) 33, 43, 88, 602, 983, 1025, 1126
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 4 cut(s) 141, 465, 1057, 1316
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 7 cut(s) 27, 233, 432, 561, 729, 966, 1127
MluNI TGGCCA 1 cut(s) 122
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 601, 688
MmeI TCCRAC 1 cut(s) 1245
Mox20I TGGCCA 1 cut(s) 122
MroXI GAANNNNTTC 2 cut(s) 1032, 1085
MscI TGGCCA 1 cut(s) 122
MseI TTAA 3 cut(s) 359, 414, 1275
MslI CAYNNNNRTG 2 cut(s) 221, 548
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 1 cut(s) 589
MspR9I CCNGG 2 cut(s) 684, 836
MunI CAATTG 1 cut(s) 966
MvaI CCWGG 2 cut(s) 684, 836
MvnI CGCG 2 cut(s) 113, 392
MwoI GCNNNNNNNGC 6 cut(s) 119, 128, 206, 317, 398, 1028
NarI GGCGCC 1 cut(s) 150
NdeII GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
NlaIII CATG 6 cut(s) 121, 214, 538, 581, 848, 1153
NlaIV GGNNCC 4 cut(s) 151, 267, 840, 1253
NmuCI GTSAC 1 cut(s) 581
NruI TCGCGA 1 cut(s) 113
PagI TCATGA 2 cut(s) 844, 1149
PciSI GCTCTTC 1 cut(s) 1038
PcsI WCGNNNNNNNCGW 1 cut(s) 866
PdmI GAANNNNTTC 2 cut(s) 1032, 1085
PfeI GAWTC 5 cut(s) 260, 714, 890, 896, 1240
PflMI CCANNNNNTGG 2 cut(s) 629, 653
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 4 cut(s) 130, 299, 673, 912
Ple19I CGATCG 1 cut(s) 190
PleI GAGTC 2 cut(s) 601, 687
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 2 cut(s) 601, 687
PshAI GACNNNNGTC 1 cut(s) 1145
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 682, 834
PspGI CCWGG 2 cut(s) 682, 834
PspN4I GGNNCC 4 cut(s) 151, 267, 840, 1253
PspPI GGNCC 2 cut(s) 265, 811
PsuI RGATCY 1 cut(s) 838
PvuI CGATCG 1 cut(s) 190
RruI TCGCGA 1 cut(s) 113
RseI CAYNNNNRTG 2 cut(s) 221, 548
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 1038
SaqAI TTAA 3 cut(s) 359, 414, 1275
SatI GCNGC 4 cut(s) 129, 298, 672, 911
Sau3AI GATC 9 cut(s) 114, 177, 187, 250, 591, 692, 838, 1178, 1234
Sau96I GGNCC 2 cut(s) 265, 811
SchI GAGTC 2 cut(s) 601, 688
ScrFI CCNGG 2 cut(s) 684, 836
SduI GDGCHC 4 cut(s) 141, 465, 1057, 1316
SfaNI GCATC 4 cut(s) 736, 991, 994, 1109
SfoI GGCGCC 1 cut(s) 151
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 221, 548
Sse9I AATT 7 cut(s) 27, 233, 432, 561, 729, 966, 1127
SsiI CCGC 5 cut(s) 126, 129, 392, 671, 1213
SspDI GGCGCC 1 cut(s) 149
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 682, 834
StyI CCWWGG 2 cut(s) 465, 1108
TaaI ACNGT 1 cut(s) 1009
TaiI ACGT 1 cut(s) 654
TaqI TCGA 3 cut(s) 186, 291, 992
TasI AATT 7 cut(s) 27, 233, 432, 561, 729, 966, 1127
TauI GCSGC 2 cut(s) 131, 674
TfiI GAWTC 5 cut(s) 260, 714, 890, 896, 1240
Tru1I TTAA 3 cut(s) 359, 414, 1275
Tru9I TTAA 3 cut(s) 359, 414, 1275
TscAI CASTG 5 cut(s) 260, 481, 724, 1143, 1224
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 2 cut(s) 297, 910
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 5 cut(s) 33, 227, 523, 1041, 1166
TspRI CASTG 5 cut(s) 260, 481, 724, 1143, 1224
Van91I CCANNNNNTGG 2 cut(s) 629, 653
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 4 cut(s) 27, 233, 432, 729
XmnI GAANNNNTTC 2 cut(s) 1032, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.