Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Forward (+)

4247128 .. 4250679

Gene Structure 3552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG057800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGCTGCTCATTATTCAGGTATTCACTGCTGAGTATTCTTTAATATGCAAAATATCTAACTACAAGAAGCCTTATGTAAGTTTCATGGATGGCATAACAATGGGCTTTGGAATTGGCCTATCAGGTCATGGTCGCTACCGGATCATTACAGAGAGGACTCTTCTTGCTATGCCAGAAAATGGTATTGGATTGTTTCCAGACGTTGGCTTTTCACATATAGCGGCACAGAGTCCAGGAGGAGGATCAGTTGGTGCTTATCTTGGAATCACTGGGAAAAGAGTTTCGACGCCATCGGATGCACTCTATGTAGGTCTTGGGACACATTTTGTGCCATCTCAAAACTTAGGTTCAGTAAAGGAGGCCCTTTTGTCAACTAACTTTTCTCAGGATCCTCATGAGGACATCAAAACGACTTTGGCGAAGTTCAGCAGGAAACCTGATTCCGAATCCCAACTGAAGCAGCTTTTACCTCAAATAGCCTCATCATTTGGTGCAAATAAGTCAGTTATTGGGACAATTGAAGAACTCAAAAAGCATCAATCGAGTTCAGATGCTACTGTGGTGGAGTGGGCTAATGAAGCTCTTCAAGGTCTTGGAAAGGGTGCTCCTTTTTCACTTTTCTTGACACAGAAGTATTTCTCCAAAGTTGCATCTGCCCTTGGGAAGAATGACAATCAATTATCCACACTGACTGGTGTTATGAAAACTGAATATCGCATTGCTGTAAGATCATCCTTGCGTAATGACTTTGCTGAAGGTGTACGGGCAGTGTTGGTGGACAAGGATCAGAATCCAAAGTGGAACCCGTCAAGGTTGGAGGAAGTTAATGAGAACGAAGTGGAAGCTCTGTTTGAACCATTGAGCCCAAATGTGGAGGAGTTGAGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

297

Amino Acids

32.22

Weight (kDa)

6.24

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	7 - 285	5e-80	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	13 - 146	5e-07	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	182, 206
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	5 cut(s)	152, 253, 386, 399, 795
AcuI	CTGAAG	2 cut(s)	479, 777
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	4 cut(s)	182, 206, 242, 874
AgsI	TTSAA	3 cut(s)	524, 590, 857
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	3 cut(s)	466, 584, 848
AluI	AGCT	3 cut(s)	466, 584, 848
Alw21I	GWGCWC	1 cut(s)	610
AlwI	GGATC	5 cut(s)	152, 253, 386, 399, 795
AoxI	GGCC	2 cut(s)	118, 363
ApeKI	GCWGC	2 cut(s)	7, 463
Asp700I	GAANNNNTTC	2 cut(s)	585, 638
AspS9I	GGNCC	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	869
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	3 cut(s)	86, 301, 343
BciT130I	CCWGG	1 cut(s)	237
BisI	GCNGC	3 cut(s)	8, 225, 464
BlsI	GCNGC	3 cut(s)	9, 226, 465
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	2 cut(s)	393, 806
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	4 cut(s)	289, 544, 547, 662
BmuI	ACTGGG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	661
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 206, 242, 874
Bse1I	ACTGG	2 cut(s)	277, 700
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	3 cut(s)	97, 304, 734
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	4 cut(s)	182, 206, 242, 874
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	2 cut(s)	24, 401
BseNI	ACTGG	2 cut(s)	277, 700
BseRI	GAGGAG	2 cut(s)	255, 893
BseXI	GCAGC	1 cut(s)	475
BshFI	GGCC	2 cut(s)	120, 365
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	334, 529
BslI	CCNNNNNNNGG	4 cut(s)	182, 206, 242, 874
BsmFI	GGGAC	2 cut(s)	334, 529
BsnI	GGCC	2 cut(s)	120, 365
Bsp1286I	GDGCHC	2 cut(s)	610, 869
Bsp143I	GATC	5 cut(s)	144, 245, 391, 731, 787
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	120, 365
BspCNI	CTCAG	2 cut(s)	25, 400
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	393, 806
BspPI	GGATC	5 cut(s)	152, 253, 386, 399, 795
BspQI	GCTCTTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	277, 700
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	5 cut(s)	144, 245, 391, 731, 787
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	661
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	2 cut(s)	168, 591
BstACI	GRCGYC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	33, 346, 387
BstF5I	GGATG	3 cut(s)	97, 304, 734
BstKTI	GATC	5 cut(s)	147, 248, 394, 734, 790
BstMBI	GATC	5 cut(s)	144, 245, 391, 731, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	120, 365
BtsCI	GGATG	3 cut(s)	97, 304, 734
BtsI	GCAGTG	2 cut(s)	27, 777
BtsIMutI	CAGTG	4 cut(s)	27, 270, 689, 777
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	3 cut(s)	88, 131, 398
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	3 cut(s)	33, 346, 387
DpnI	GATC	5 cut(s)	146, 247, 393, 733, 789
DpnII	GATC	5 cut(s)	144, 245, 391, 731, 787
Eam1104I	CTCTTC	2 cut(s)	168, 591
EarI	CTCTTC	2 cut(s)	168, 591
Eco130I	CCWWGG	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	869
Eco57I	CTGAAG	2 cut(s)	479, 777
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	3 cut(s)	91, 134, 401
FaqI	GGGAC	2 cut(s)	334, 529
FatI	CATG	3 cut(s)	87, 130, 397
Fnu4HI	GCNGC	3 cut(s)	8, 225, 464
FokI	GGATG	3 cut(s)	104, 311, 721
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	3 cut(s)	8, 225, 464
GluI	GCNGC	3 cut(s)	8, 225, 464
HaeIII	GGCC	2 cut(s)	120, 365
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	91, 134, 401
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	6 cut(s)	160, 232, 267, 443, 449, 793
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	375, 764, 781
Hpy188I	TCNGA	4 cut(s)	298, 448, 553, 792
Hpy188III	TCNNGA	4 cut(s)	200, 389, 398, 625
Hpy8I	GTNNAC	3 cut(s)	375, 764, 781
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	752
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	51, 302, 497, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	3 cut(s)	33, 346, 387
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	91, 134, 401
Kzo9I	GATC	5 cut(s)	144, 245, 391, 731, 787
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	4 cut(s)	289, 544, 547, 662
MaeII	ACGT	1 cut(s)	204
MalI	GATC	5 cut(s)	146, 247, 393, 733, 789
MboI	GATC	5 cut(s)	144, 245, 391, 731, 787
MboII	GAAGA	4 cut(s)	155, 536, 578, 679
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	610, 869
MluCI	AATT	3 cut(s)	114, 519, 680
MlyI	GAGTC	2 cut(s)	154, 241
MmeI	TCCRAC	1 cut(s)	798
MroXI	GAANNNNTTC	2 cut(s)	585, 638
MseI	TTAA	2 cut(s)	44, 828
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	581
NdeII	GATC	5 cut(s)	144, 245, 391, 731, 787
NlaIII	CATG	3 cut(s)	91, 134, 401
NlaIV	GGNNCC	2 cut(s)	393, 806
PagI	TCATGA	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PdmI	GAANNNNTTC	2 cut(s)	585, 638
PfeI	GAWTC	4 cut(s)	267, 443, 449, 793
PflMI	CCANNNNNTGG	2 cut(s)	182, 206
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	9, 226, 465
PleI	GAGTC	2 cut(s)	154, 240
PpsI	GAGTC	2 cut(s)	154, 240
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	393, 806
PspPI	GGNCC	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	44, 828
SatI	GCNGC	3 cut(s)	8, 225, 464
Sau3AI	GATC	5 cut(s)	144, 245, 391, 731, 787
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	2 cut(s)	154, 241
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	610, 869
SfaNI	GCATC	4 cut(s)	289, 544, 547, 662
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	114, 519, 680
SsiI	CCGC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	287, 545
TasI	AATT	3 cut(s)	114, 519, 680
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	4 cut(s)	267, 443, 449, 793
Tru1I	TTAA	2 cut(s)	44, 828
Tru9I	TTAA	2 cut(s)	44, 828
TscAI	CASTG	4 cut(s)	34, 277, 696, 777
TseI	GCWGC	2 cut(s)	7, 463
TspDTI	ATGAA	3 cut(s)	76, 594, 719
TspRI	CASTG	4 cut(s)	34, 277, 696, 777
Van91I	CCANNNNNTGG	2 cut(s)	182, 206
XmnI	GAANNNNTTC	2 cut(s)	585, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.