Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003536

Physical Location & Seq

Genomic Coordinates Reverse (-)

86497752 .. 86498574

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGTACATTTCAGAGGACTGTTCTTACTATGCCAGAAAATGGTATTGGATTGTTTCCAGACATAGGTTTTTCACATATAGCAGCACAAAGTCCAGGAGAAGGATCTGTTGTCAATTTGGAGCAATTGGTTGGGGAGCATGGTAGGGATGTTGTTCACAATGTCGTGCCTGCTATTGATGAGAGTCTACAAACAGGGGGCTTGATTATGGTTAAAGCTATTAAGCTAATGACATTGTTCAGGCCATCCCAAGTTCAACGGCAAGTCCAATTTTCCAACAATCTCTCCAGTAATGGAACGACAGCAATGAGGAACCTCTTGGACATCATTTATGTGCTCAATCTGATATTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016020 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

118

Amino Acids

12.88

Weight (kDa)

5.81

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT3G24360 AT4G13360
fragaria_vesca	FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350 FvH4_1g05350
malus_domestica	MD02G1052700.v1.1 MD02G1056500.v1.1 MD15G1189500.v1.1
prunus_persica	Prupe.7G227300_v2.0.a1
pyrus_communis	pycom02g04570 pycom15g16990
rosa_chinensis	RchiOBHm_Chr2g0091031 RchiOBHm_Chr2g0092761 RchiOBHm_Chr2g0092831
rosa_laevigata	RLG00000016169
rosa_multiflora	Rmu_sc0003305.1_g000013
rosa_roxburghii	Rroxscaffold_2G00148870 Rroxscaffold_2G00150670
rosa_rugosa	Rorug02G0011500 Rorug02G0011500 Rorug02G0011600 Rorug02G0029300
rosa_samantha	Rh2AG058000 Rh2BG056300 Rh2CG058600 Rh2DG057800
rosa_wichuraiana	Rw2G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	41, 65, 101
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	2 cut(s)	218, 226
AluI	AGCT	2 cut(s)	218, 226
Alw21I	GWGCWC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	96
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 65, 101
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	154, 245
BseLI	CCNNNNNNNGG	3 cut(s)	41, 65, 101
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	339
BslI	CCNNNNNNNGG	3 cut(s)	41, 65, 101
BsnI	GGCC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	154, 245
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	154, 245
Cac8I	GCNNGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	4 cut(s)	201, 218, 226, 244
CviKI_1	RGCY	4 cut(s)	201, 218, 226, 244
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	143
FaiI	YATR	7 cut(s)	32, 65, 78, 80, 141, 209, 333
FatI	CATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	161, 232
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	157, 188
Hpy188I	TCNGA	2 cut(s)	15, 345
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	2 cut(s)	157, 188
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	121, 136
LpnPI	CCDG	8 cut(s)	48, 72, 81, 108, 180, 183, 226, 301
Lsp1109I	GCAGC	1 cut(s)	95
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	3 cut(s)	115, 125, 269
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	9, 303, 326
MseI	TTAA	2 cut(s)	213, 222
MslI	CAYNNNNRTG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	213, 222
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	4 cut(s)	70, 220, 228, 318
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	115, 125, 269
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	3 cut(s)	115, 125, 269
Tru1I	TTAA	2 cut(s)	213, 222
Tru9I	TTAA	2 cut(s)	213, 222
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.