AT3G24750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007020
Physical Location & Seq
Forward (+)
9035980 .. 9037785
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24750.2

Sequence Viewer

Length: 510 bp
ATGGCAAAGATAAAAGCGCAAGGAGGAGAAGAACAAGTGACATCGACAAGGTTTGATCTGAAAAAGGCTATAAGAGTCTTGCAACCGGAGAAACAAGACGATACCAATAAAGAGAAGTCGAAAAGCGAGCAGAGCAAAGGTAAGGCCACACTTTCAAGAATGAAGGAGCTTATCAAATGGGCTGCAGCAGCCAAATCCGACAAAGCTGTCAAATTCTTTACCCCTAAGATAATGATGGAGTTGAAAAACCGAAGAAAGTTGAAGATGATGAGAGAAGTCAATGAAGAAGAATCAACAAAAAGGATGAGTAGTGTATCTGCAAATATAAGTTTGAGATGGGAGAGTAGTGAGAGTTGCACAACAAACTCTTCCTCTGATCACATCTCTATAGTTTCTTCACCAGGAATCCTTGTTTCCTTGAGTCCTACGCCACTCTACCGATGTAGATCCAGGAAATGCAACTGGATCACTACTGATTCTGAATTTGTGGTGTTAGAGTTAGAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.19

Weight (kDa)

9.63

Isoelectric Point (pI)

65.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AclWI GGATC 2 cut(s) 441, 473
AcsI RAATTY 2 cut(s) 212, 482
AgsI TTSAA 3 cut(s) 156, 244, 262
AjnI CCWGG 2 cut(s) 400, 449
AluBI AGCT 2 cut(s) 169, 206
AluI AGCT 2 cut(s) 169, 206
AlwI GGATC 2 cut(s) 441, 473
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 182, 185, 188
ApoI RAATTY 2 cut(s) 212, 482
AspLEI GCGC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 390
BbvI GCAGC 3 cut(s) 169, 197, 200
BccI CCATC 2 cut(s) 229, 330
BciT130I CCWGG 2 cut(s) 402, 451
BclI TGATCA 1 cut(s) 376
BfmI CTRYAG 2 cut(s) 183, 387
BisI GCNGC 3 cut(s) 183, 186, 189
BlsI GCNGC 3 cut(s) 184, 187, 190
Bme1390I CCNGG 2 cut(s) 402, 451
BmrFI CCNGG 2 cut(s) 402, 451
BpuEI CTTGAG 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 445
BseBI CCWGG 2 cut(s) 402, 451
BseGI GGATG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 445
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 169, 197, 200
BshFI GGCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 4 cut(s) 55, 376, 446, 465
BspANI GGCC 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 2 cut(s) 441, 473
BsrI ACTGG 1 cut(s) 467
BssMI GATC 4 cut(s) 55, 376, 446, 465
Bst2UI CCWGG 2 cut(s) 402, 451
Bst6I CTCTTC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 58, 379, 449, 468
BstMBI GATC 4 cut(s) 55, 376, 446, 465
BstMWI GCNNNNNNNGC 2 cut(s) 132, 188
BstNI CCWGG 2 cut(s) 402, 451
BstSCI CCNGG 2 cut(s) 400, 449
BstSFI CTRYAG 2 cut(s) 183, 387
BstV1I GCAGC 3 cut(s) 169, 197, 200
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 19
CviJI RGCY 6 cut(s) 68, 146, 169, 182, 191, 206
CviKI_1 RGCY 6 cut(s) 68, 146, 169, 182, 191, 206
DdeI CTNAG 1 cut(s) 225
DpnI GATC 4 cut(s) 57, 378, 448, 467
DpnII GATC 4 cut(s) 55, 376, 446, 465
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 400, 449
FaiI YATR 4 cut(s) 71, 326, 389, 508
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 183, 186, 189
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 3 cut(s) 183, 186, 189
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 183, 186, 189
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 19
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 5 cut(s) 75, 290, 405, 421, 476
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 390
Hpy188I TCNGA 4 cut(s) 60, 199, 376, 481
Hpy188III TCNNGA 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 157
HpyCH4V TGCA 5 cut(s) 82, 185, 320, 357, 459
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 188
HpyF3I CTNAG 1 cut(s) 225
HspAI GCGC 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 4 cut(s) 55, 376, 446, 465
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 99, 387, 414, 436, 448, 463
Lsp1109I GCAGC 3 cut(s) 169, 197, 200
MaeIII GTNAC 1 cut(s) 37
MalI GATC 4 cut(s) 57, 378, 448, 467
MboI GATC 4 cut(s) 55, 376, 446, 465
MboII GAAGA 7 cut(s) 41, 264, 274, 296, 299, 360, 387
MflI RGATCY 1 cut(s) 446
MluCI AATT 2 cut(s) 212, 482
MlyI GAGTC 2 cut(s) 84, 430
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 2 cut(s) 17, 382
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 402, 451
MvaI CCWGG 2 cut(s) 402, 451
MwoI GCNNNNNNNGC 2 cut(s) 132, 188
NdeII GATC 4 cut(s) 55, 376, 446, 465
NmuCI GTSAC 1 cut(s) 37
PfeI GAWTC 3 cut(s) 290, 405, 476
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 3 cut(s) 184, 187, 190
PleI GAGTC 2 cut(s) 83, 429
PpsI GAGTC 2 cut(s) 83, 429
Psp6I CCWGG 2 cut(s) 400, 449
PspGI CCWGG 2 cut(s) 400, 449
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 446
SatI GCNGC 3 cut(s) 183, 186, 189
Sau3AI GATC 4 cut(s) 55, 376, 446, 465
SchI GAGTC 2 cut(s) 84, 430
ScrFI CCNGG 2 cut(s) 402, 451
SetI ASST 4 cut(s) 53, 142, 171, 208
SfcI CTRYAG 2 cut(s) 183, 387
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 2 cut(s) 212, 482
StyD4I CCNGG 2 cut(s) 400, 449
TaqI TCGA 2 cut(s) 44, 119
TasI AATT 2 cut(s) 212, 482
TfiI GAWTC 3 cut(s) 290, 405, 476
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 3 cut(s) 182, 185, 188
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 176, 297
XapI RAATTY 2 cut(s) 212, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.