Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Reverse (-)

46349847 .. 46351243

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGTTTCTTCGATGGCTTTCTAAAGTTACACAAGGACAAGCAAGAGAGGAGACTTCTGCTCCTACCAACAAGAAAAAAGAAATTAGTGATCAAGAAGCTAAACAGAACTACATAATTGTCTTTAAGAGTGGGGGTGTTGGTGTCTATCGAAAAACAAAAGGATTTGAAGAAGGCAAACCCGCTCGTAAGAAGTTCAAGCCATTTGCCTTTCTGTGTAGAAAGGATATAGCACAGGCTTGCTTTGATAGTACTCTTCATTTGAGGAGACTTGATAGCATAAATAGGAGGCAGCAAAAGCAGTGTTGGACTCGATCCATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATGCAGCTAATGTAGGCAGCAAGGTTTTACCAGTAAGTGACTCAACGTTATCAACCTCTACTAACAAAAACCATGACCAATGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCGTGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCTGCCTACTCGGCAATTTCAGTAGCATCTTCATTGAAGACTGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTTCAGGACACAGATCACTGGCAACCCAAGAATGGGAATTGGATCACTTCAGACTCTGACTTTGTTGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.43

Weight (kDa)

9.78

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	185
AciI	CCGC	1 cut(s)	183
AclI	AACGTT	1 cut(s)	419
AclWI	GGATC	2 cut(s)	309, 833
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	772
AcuI	CTGAAG	2 cut(s)	770, 816
AfaI	GTAC	2 cut(s)	253, 624
AfiI	CCNNNNNNNGG	2 cut(s)	815, 816
AgsI	TTSAA	6 cut(s)	170, 199, 739, 764, 772, 777
AluBI	AGCT	8 cut(s)	101, 380, 523, 554, 666, 687, 784, 859
AluI	AGCT	8 cut(s)	101, 380, 523, 554, 666, 687, 784, 859
Alw26I	GTCTC	2 cut(s)	47, 262
AlwI	GGATC	2 cut(s)	309, 833
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	7 cut(s)	292, 377, 390, 536, 539, 542, 687
ApoI	RAATTY	1 cut(s)	772
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	7 cut(s)	304, 389, 402, 523, 526, 554, 674
BccI	CCATC	3 cut(s)	9, 525, 666
BcgI	CGANNNNNNTGC	1 cut(s)	27
BclI	TGATCA	3 cut(s)	91, 634, 745
BcoDI	GTCTC	2 cut(s)	47, 262
BfaI	CTAG	2 cut(s)	345, 854
BfmI	CTRYAG	1 cut(s)	540
BglI	GCCNNNNNGGC	1 cut(s)	713
BisI	GCNGC	7 cut(s)	293, 378, 391, 537, 540, 543, 688
BlsI	GCNGC	7 cut(s)	294, 379, 392, 538, 541, 544, 689
BmcAI	AGTACT	1 cut(s)	253
BmsI	GCATC	3 cut(s)	364, 470, 737
BpiI	GAAGAC	1 cut(s)	746
BsaBI	GATNNNNATC	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	815, 816
Bse1I	ACTGG	3 cut(s)	404, 620, 806
Bse3DI	GCAATG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	633
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	815, 816
BseMI	GCAATG	1 cut(s)	652
BseNI	ACTGG	3 cut(s)	404, 620, 806
BseRI	GAGGAG	2 cut(s)	65, 280
BseXI	GCAGC	7 cut(s)	304, 389, 402, 523, 526, 554, 674
BshFI	GGCC	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	2 cut(s)	815, 816
BsmAI	GTCTC	2 cut(s)	47, 262
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	579
Bsp143I	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	579
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	309, 833
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	404, 620, 806
BssMI	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
BstMAI	GTCTC	2 cut(s)	47, 262
BstMBI	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
BstMWI	GCNNNNNNNGC	4 cut(s)	298, 542, 551, 713
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	7 cut(s)	304, 389, 402, 523, 526, 554, 674
BstV2I	GAAGAC	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	308, 799
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	839
Csp6I	GTAC	2 cut(s)	252, 623
CviAII	CATG	2 cut(s)	319, 446
CviQI	GTAC	2 cut(s)	252, 623
DpnI	GATC	7 cut(s)	93, 316, 636, 662, 747, 798, 827
DpnII	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco57I	CTGAAG	2 cut(s)	770, 816
EcoRI	GAATTC	1 cut(s)	772
FaeI	CATG	2 cut(s)	322, 449
FaiI	YATR	7 cut(s)	116, 230, 281, 320, 447, 755, 862
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	318, 445
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	3 cut(s)	91, 634, 745
Fnu4HI	GCNGC	7 cut(s)	293, 378, 391, 537, 540, 543, 688
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	7 cut(s)	293, 378, 391, 537, 540, 543, 688
FspBI	CTAG	2 cut(s)	345, 854
GluI	GCNGC	7 cut(s)	293, 378, 391, 537, 540, 543, 688
HaeIII	GGCC	1 cut(s)	579
Hin1II	CATG	2 cut(s)	322, 449
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	4 cut(s)	310, 413, 650, 836
Hpy188I	TCNGA	3 cut(s)	466, 835, 841
Hpy188III	TCNNGA	3 cut(s)	95, 510, 788
HpyAV	CCTTC	2 cut(s)	167, 511
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	4 cut(s)	4, 377, 542, 592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	298, 542, 551, 713
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	322, 449
Ksp22I	TGATCA	3 cut(s)	91, 634, 745
Kzo9I	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
LmnI	GCTCC	4 cut(s)	67, 458, 520, 695
LpnPI	CCDG	6 cut(s)	221, 417, 633, 639, 773, 787
Lsp1109I	GCAGC	7 cut(s)	304, 389, 402, 523, 526, 554, 674
LweI	GCATC	3 cut(s)	364, 470, 737
MaeI	CTAG	2 cut(s)	345, 854
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	3 cut(s)	28, 362, 410
MalI	GATC	7 cut(s)	93, 316, 636, 662, 747, 798, 827
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
MboII	GAAGA	7 cut(s)	182, 248, 334, 340, 347, 723, 751
MluCI	AATT	8 cut(s)	84, 117, 593, 677, 717, 750, 772, 820
MlyI	GAGTC	4 cut(s)	304, 407, 644, 830
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	6 cut(s)	43, 258, 282, 341, 439, 712
MseI	TTAA	3 cut(s)	126, 483, 641
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	554
MwoI	GCNNNNNNNGC	4 cut(s)	298, 542, 551, 713
NdeII	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
NlaIII	CATG	2 cut(s)	322, 449
NmeAIII	GCCGAG	1 cut(s)	692
NmuCI	GTSAC	1 cut(s)	410
PkrI	GCNGC	7 cut(s)	294, 379, 392, 538, 541, 544, 689
PleI	GAGTC	4 cut(s)	304, 407, 644, 830
PpsI	GAGTC	4 cut(s)	304, 407, 644, 830
Psp1406I	AACGTT	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	839
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	253, 624
RsaNI	GTAC	2 cut(s)	252, 623
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	126, 483, 641
SatI	GCNGC	7 cut(s)	293, 378, 391, 537, 540, 543, 688
Sau3AI	GATC	7 cut(s)	91, 314, 634, 660, 745, 796, 825
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	4 cut(s)	304, 407, 644, 830
SfaNI	GCATC	3 cut(s)	364, 470, 737
SfcI	CTRYAG	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	8 cut(s)	84, 117, 593, 677, 717, 750, 772, 820
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	2 cut(s)	345, 854
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	3 cut(s)	13, 151, 313
TasI	AATT	8 cut(s)	84, 117, 593, 677, 717, 750, 772, 820
TatI	WGTACW	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	126, 483, 641
Tru9I	TTAA	3 cut(s)	126, 483, 641
TscAI	CASTG	2 cut(s)	308, 806
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	7 cut(s)	292, 377, 390, 536, 539, 542, 687
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	6 cut(s)	248, 335, 341, 530, 723, 770
TspRI	CASTG	2 cut(s)	308, 806
XapI	RAATTY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XspI	CTAG	2 cut(s)	345, 854
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.