Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Reverse (-)

30515312 .. 30517490

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1178500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAGCTTCTTCAATGGCTATTTGGAGCTAAAGTTGGACAAGAAAGGGAGGAGATTTCTAGTTCTTCCAACAAGAACGCAACAACTAATGATCAAGAAGCTAAACCAAATTACATAATCGTCTTTAGGCGCGGTAGCGCCAGTGTTTATCGAAAATCATCAAAAGGAGTTGAAGAAAGCAAATCGGGTAACAAGAAGTTCAAGCCGTTTACCTTTCTATGTCGAAAAGATGTCGCAACGGCTTGCTTTAATAGCACTCTTCAGCTAAAGAGACTTAATAGCATAAACAGAAGGCAGGGAAGGCAGCATTGGATTCAATCTATGAAGATCATGAAGAAAGAAGATATTGCAAGAGGTCTGGGAATTAGTAGCACCAAGGCGGATTCGGTGAATGTAAGCAACAAGGTTTTACCGGTGAATGATTCAACGTTATCAACCTCGACGAGAACAAACGAACAATGTGGCTTACCGGAGAAGAAAGAACAGCTTAAAGGGGACAAAACCAGAACCCTTTCAAGAATGAAGGAGCTTCTGAGATGGGCTGCTGCTGCAAAATCAGACAAGGGTGGAAAATTCATCGCTCGAAAGGTTAAGCAATTTCGAAACCGGGGAACTCTGAAAGCAGTACCAGATGATGATCAACCAAGCAACGACTCGCCGAAGATCAGCTTCAGATGGGATTTGGAGAGCAACTCCACCACTTCCTCTGCCTATACAGCGCTTTCAACAGCATCTTCACTCAAGAATGATCAAATCATAAGCCTTCCATCTTTGAATTCTACAAAGTTTCAAGACCCGGATCACTTGGAACCCAAGAAAGGGAACTGGATCACCTCAGACTCAGAATTTGTGGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.3

Weight (kDa)

9.89

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	132, 380
AclI	AACGTT	1 cut(s)	428
AclWI	GGATC	2 cut(s)	807, 836
AcsI	RAATTY	3 cut(s)	572, 775, 845
AcuI	CTGAAG	2 cut(s)	245, 655
AfaI	GTAC	1 cut(s)	627
AfeI	AGCGCT	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	818, 819
AgeI	ACCGGT	1 cut(s)	412
AgsI	TTSAA	9 cut(s)	14, 173, 202, 317, 426, 516, 726, 775, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	8 cut(s)	7, 29, 101, 265, 487, 529, 669, 862
AluI	AGCT	8 cut(s)	7, 29, 101, 265, 487, 529, 669, 862
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	2 cut(s)	807, 836
Aor51HI	AGCGCT	1 cut(s)	720
ApeKI	GCWGC	5 cut(s)	4, 304, 542, 545, 548
ApoI	RAATTY	3 cut(s)	572, 775, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AsiGI	ACCGGT	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	511
AspLEI	GCGC	3 cut(s)	132, 140, 721
AsuC2I	CCSGG	2 cut(s)	608, 797
AsuHPI	GGTGA	3 cut(s)	400, 427, 823
AsuII	TTCGAA	1 cut(s)	601
BbvI	GCAGC	5 cut(s)	16, 316, 529, 532, 535
BccI	CCATC	3 cut(s)	531, 669, 775
BceAI	ACGGC	2 cut(s)	190, 255
BclI	TGATCA	3 cut(s)	91, 637, 748
BcnI	CCSGG	2 cut(s)	608, 797
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	60, 857
BfoI	RGCGCY	2 cut(s)	141, 722
BisI	GCNGC	5 cut(s)	5, 305, 543, 546, 549
BlsI	GCNGC	5 cut(s)	6, 306, 544, 547, 550
Bme1390I	CCNGG	2 cut(s)	608, 797
BmiI	GGNNCC	1 cut(s)	810
BmrFI	CCNGG	2 cut(s)	608, 797
BmsI	GCATC	1 cut(s)	740
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
Bpu14I	TTCGAA	1 cut(s)	601
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	2 cut(s)	608, 797
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	375, 607
BsaWI	WCCGGW	2 cut(s)	412, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	818, 819
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	141, 830
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	375, 607
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	818, 819
BseMII	CTCAG	3 cut(s)	524, 849, 855
BseNI	ACTGG	2 cut(s)	141, 830
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	5 cut(s)	16, 316, 529, 532, 535
Bsh1236I	CGCG	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	412
BsiSI	CCGG	4 cut(s)	413, 470, 607, 797
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	818, 819
BsmAI	GTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	601
Bsp143I	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
BspACI	CCGC	2 cut(s)	132, 380
BspCNI	CTCAG	3 cut(s)	525, 848, 854
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	810
BspPI	GGATC	2 cut(s)	807, 836
BspT104I	TTCGAA	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	141, 830
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	375, 607
BssMI	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
BssT1I	CCWWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	533, 835, 841
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	2 cut(s)	141, 722
BstHHI	GCGC	3 cut(s)	132, 140, 721
BstKTI	GATC	7 cut(s)	94, 330, 640, 666, 751, 802, 831
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 301, 548, 716
BstSCI	CCNGG	2 cut(s)	606, 795
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	5 cut(s)	16, 316, 529, 532, 535
BtgZI	GCGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	3 cut(s)	132, 140, 721
Cfr10I	RCCGGY	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	626
CspAI	ACCGGT	1 cut(s)	412
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	3 cut(s)	533, 835, 841
DpnI	GATC	7 cut(s)	93, 329, 639, 665, 750, 801, 830
DpnII	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	375
Eco47III	AGCGCT	1 cut(s)	720
Eco57I	CTGAAG	2 cut(s)	245, 655
EcoRI	GAATTC	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	116, 220, 284, 323, 332, 714, 758, 865
FalI	AAGNNNNNCTT	4 cut(s)	471, 503, 653, 685
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	1 cut(s)	330
FbaI	TGATCA	3 cut(s)	91, 637, 748
Fnu4HI	GCNGC	5 cut(s)	5, 305, 543, 546, 549
Fsp4HI	GCNGC	5 cut(s)	5, 305, 543, 546, 549
FspBI	CTAG	2 cut(s)	60, 857
GlaI	GCGC	3 cut(s)	131, 139, 720
GluI	GCNGC	5 cut(s)	5, 305, 543, 546, 549
HaeII	RGCGCY	2 cut(s)	141, 722
HapII	CCGG	4 cut(s)	413, 470, 607, 797
HhaI	GCGC	3 cut(s)	132, 140, 721
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	3 cut(s)	130, 138, 719
HinP1I	GCGC	3 cut(s)	130, 138, 719
HinfI	GANTC	5 cut(s)	313, 383, 422, 653, 839
HpaII	CCGG	4 cut(s)	413, 470, 607, 797
HphI	GGTGA	3 cut(s)	400, 427, 823
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	6 cut(s)	534, 559, 618, 674, 838, 844
Hpy188III	TCNNGA	5 cut(s)	95, 331, 516, 742, 791
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	4 cut(s)	285, 294, 517, 773
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	3 cut(s)	4, 350, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 301, 548, 716
HpyF3I	CTNAG	3 cut(s)	533, 835, 841
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	3 cut(s)	130, 138, 719
Ksp22I	TGATCA	3 cut(s)	91, 637, 748
Kzo9I	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
LmnI	GCTCC	2 cut(s)	26, 526
Lsp1109I	GCAGC	5 cut(s)	16, 316, 529, 532, 535
LweI	GCATC	1 cut(s)	740
MaeI	CTAG	2 cut(s)	60, 857
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	7 cut(s)	93, 329, 639, 665, 750, 801, 830
MboI	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
MboII	GAAGA	9 cut(s)	57, 185, 251, 337, 346, 353, 487, 673, 726
MluCI	AATT	6 cut(s)	109, 363, 572, 596, 775, 845
MlyI	GAGTC	2 cut(s)	647, 833
MmeI	TCCRAC	2 cut(s)	16, 93
MnlI	CCTC	5 cut(s)	43, 347, 448, 715, 844
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	4 cut(s)	249, 276, 489, 591
MspI	CCGG	4 cut(s)	413, 470, 607, 797
MspR9I	CCNGG	2 cut(s)	608, 797
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	252, 301, 548, 716
NciI	CCSGG	2 cut(s)	608, 797
NdeII	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	810
NspV	TTCGAA	1 cut(s)	601
PagI	TCATGA	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	313, 383, 422
PinAI	ACCGGT	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	6, 306, 544, 547, 550
PleI	GAGTC	2 cut(s)	647, 833
PpsI	GAGTC	2 cut(s)	647, 833
Psp1406I	AACGTT	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	810
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	249, 276, 489, 591
SatI	GCNGC	5 cut(s)	5, 305, 543, 546, 549
Sau3AI	GATC	7 cut(s)	91, 327, 637, 663, 748, 799, 828
SchI	GAGTC	2 cut(s)	647, 833
ScrFI	CCNGG	2 cut(s)	608, 797
SfaNI	GCATC	1 cut(s)	740
SfuI	TTCGAA	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	6 cut(s)	109, 363, 572, 596, 775, 845
SsiI	CCGC	2 cut(s)	132, 380
SspMI	CTAG	2 cut(s)	60, 857
StyD4I	CCNGG	2 cut(s)	606, 795
StyI	CCWWGG	1 cut(s)	375
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	5 cut(s)	151, 223, 440, 583, 601
TasI	AATT	6 cut(s)	109, 363, 572, 596, 775, 845
TfiI	GAWTC	3 cut(s)	313, 383, 422
Tru1I	TTAA	4 cut(s)	249, 276, 489, 591
Tru9I	TTAA	4 cut(s)	249, 276, 489, 591
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	5 cut(s)	4, 304, 542, 545, 548
TspDTI	ATGAA	4 cut(s)	338, 347, 536, 565
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	3 cut(s)	572, 775, 845
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	2 cut(s)	60, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.