FvH4_2g19360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007020
Physical Location & Seq
Reverse (-)
16469968 .. 16471363
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19360.t1

Sequence Viewer

Length: 861 bp
ATGCAGTTTCTTCAATGGCTTTCTAAAGTTACACAAGGAAAAGCAAGAGAGGAGACATCTGCTCCTACCAACAAGAAAAAAGATACTAATGATCAAGATCATAAACAGAACTACATAATTGTATTTAAGCGTGGGGGTGTTGGTGTTTATCAGAAAACAAAAGGATTTGAAGAAAGCACCTTCCCTTGTAAAAAGTTCAAGCCTTTTGCCTTTCTGTGCAGAAAGGATATAGCACAGGCTTGCTTTTATAGTACCGTTCACCTGAGGAGACTTGATAGCATAAATACAAGGCAGCAAAAGCAGTGTCGGGCTCGATCCATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATCAGGCTAATGTAGGCAGCAAGGTTTTACCAGTAAGTGACTCGACATTATCAACCTCAACTAACACGAGCCATGACCAATGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGAGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCGTGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCGACGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCAGCCTACTCAGCAATTTCAGTAGCATCTTCATCGAAGAATGATCAAGTTATGAACATTCAATCTTTGGACACGAAGTTTCAAGACTCAGATCACTGGCAACCCAAGAAAGGGAATTGGATCACCTCAGACTCAGACTTTGTTGTGCTAGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.37

Weight (kDa)

9.59

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 309, 381, 830
AcoI YGGCCR 1 cut(s) 577
AfaI GTAC 2 cut(s) 253, 624
AfiI CCNNNNNNNGG 2 cut(s) 812, 813
AgsI TTSAA 5 cut(s) 14, 170, 199, 764, 785
AluBI AGCT 5 cut(s) 523, 554, 666, 687, 856
AluI AGCT 5 cut(s) 523, 554, 666, 687, 856
Alw26I GTCTC 2 cut(s) 47, 262
AlwI GGATC 3 cut(s) 309, 381, 830
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 6 cut(s) 292, 390, 536, 539, 542, 687
ArsI GACNNNNNNTTYG 4 cut(s) 289, 321, 824, 856
AsuHPI GGTGA 2 cut(s) 251, 817
AxyI CCTNAGG 1 cut(s) 263
BanII GRGCYC 1 cut(s) 313
BauI CACGAG 1 cut(s) 439
BbvCI CCTCAGC 1 cut(s) 703
BbvI GCAGC 6 cut(s) 304, 402, 523, 526, 554, 674
BccI CCATC 2 cut(s) 525, 666
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BclI TGATCA 3 cut(s) 91, 634, 745
BcoDI GTCTC 2 cut(s) 47, 262
BfaI CTAG 2 cut(s) 345, 851
BfmI CTRYAG 1 cut(s) 540
BisI GCNGC 6 cut(s) 293, 391, 537, 540, 543, 688
BlsI GCNGC 6 cut(s) 294, 392, 538, 541, 544, 689
BmsI GCATC 2 cut(s) 470, 737
Bpu10I CCTNAGC 1 cut(s) 703
BsaBI GATNNNNATC 2 cut(s) 96, 633
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 812, 813
Bse1I ACTGG 3 cut(s) 404, 620, 803
Bse21I CCTNAGG 1 cut(s) 263
Bse8I GATNNNNATC 2 cut(s) 96, 633
BseJI GATNNNNATC 2 cut(s) 96, 633
BseLI CCNNNNNNNGG 2 cut(s) 812, 813
BseMII CTCAG 6 cut(s) 254, 717, 726, 804, 843, 849
BseNI ACTGG 3 cut(s) 404, 620, 803
BseRI GAGGAG 2 cut(s) 65, 280
BseXI GCAGC 6 cut(s) 304, 402, 523, 526, 554, 674
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 1 cut(s) 579
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 812, 813
BsmAI GTCTC 2 cut(s) 47, 262
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 6 cut(s) 255, 716, 725, 803, 842, 848
BspMAI CTGCAG 1 cut(s) 544
BspPI GGATC 3 cut(s) 309, 381, 830
BsrI ACTGG 3 cut(s) 404, 620, 803
BssMI GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
BssSI CACGAG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 439
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 6 cut(s) 263, 703, 712, 790, 829, 835
BstKTI GATC 9 cut(s) 94, 100, 317, 376, 637, 663, 748, 796, 825
BstMAI GTCTC 2 cut(s) 47, 262
BstMBI GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
BstMWI GCNNNNNNNGC 4 cut(s) 298, 542, 551, 713
BstSFI CTRYAG 1 cut(s) 540
BstV1I GCAGC 6 cut(s) 304, 402, 523, 526, 554, 674
Bsu36I CCTNAGG 1 cut(s) 263
BsuRI GGCC 1 cut(s) 579
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 308, 796
Cac8I GCNNGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 252, 623
CviAII CATG 2 cut(s) 319, 446
CviQI GTAC 2 cut(s) 252, 623
DdeI CTNAG 6 cut(s) 263, 703, 712, 790, 829, 835
DpnI GATC 9 cut(s) 93, 99, 316, 375, 636, 662, 747, 795, 824
DpnII GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
EaeI YGGCCR 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 313
Eco81I CCTNAGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 313
FaeI CATG 2 cut(s) 322, 449
FaiI YATR 9 cut(s) 102, 116, 230, 249, 281, 320, 447, 755, 859
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 1 cut(s) 503
FatI CATG 2 cut(s) 318, 445
FbaI TGATCA 3 cut(s) 91, 634, 745
Fnu4HI GCNGC 6 cut(s) 293, 391, 537, 540, 543, 688
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 6 cut(s) 293, 391, 537, 540, 543, 688
FspBI CTAG 2 cut(s) 345, 851
GluI GCNGC 6 cut(s) 293, 391, 537, 540, 543, 688
HaeIII GGCC 1 cut(s) 579
Hin1II CATG 2 cut(s) 322, 449
HinfI GANTC 4 cut(s) 413, 650, 788, 833
HphI GGTGA 2 cut(s) 251, 817
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 5 cut(s) 153, 466, 793, 832, 838
Hpy188III TCNNGA 3 cut(s) 95, 510, 785
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 2 cut(s) 190, 511
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 4, 219, 542, 592
HpyF10VI GCNNNNNNNGC 4 cut(s) 298, 542, 551, 713
HpyF3I CTNAG 6 cut(s) 263, 703, 712, 790, 829, 835
Hsp92II CATG 2 cut(s) 322, 449
Ksp22I TGATCA 3 cut(s) 91, 634, 745
Kzo9I GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
LmnI GCTCC 4 cut(s) 67, 458, 520, 695
LpnPI CCDG 7 cut(s) 221, 275, 362, 417, 633, 639, 784
Lsp1109I GCAGC 6 cut(s) 304, 402, 523, 526, 554, 674
LweI GCATC 2 cut(s) 470, 737
MaeI CTAG 2 cut(s) 345, 851
MaeIII GTNAC 3 cut(s) 28, 362, 410
MalI GATC 9 cut(s) 93, 99, 316, 375, 636, 662, 747, 795, 824
MboI GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
MboII GAAGA 6 cut(s) 182, 334, 340, 347, 723, 751
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 117, 593, 677, 717, 817
MlyI GAGTC 4 cut(s) 407, 644, 782, 827
MnlI CCTC 7 cut(s) 43, 258, 341, 439, 557, 712, 838
MseI TTAA 3 cut(s) 126, 483, 641
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 554
MwoI GCNNNNNNNGC 4 cut(s) 298, 542, 551, 713
NdeII GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
NlaIII CATG 2 cut(s) 322, 449
NmuCI GTSAC 1 cut(s) 410
PkrI GCNGC 6 cut(s) 294, 392, 538, 541, 544, 689
PleI GAGTC 4 cut(s) 407, 644, 782, 827
PpsI GAGTC 4 cut(s) 407, 644, 782, 827
PstI CTGCAG 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 253, 624
RsaNI GTAC 2 cut(s) 252, 623
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 3 cut(s) 126, 483, 641
SatI GCNGC 6 cut(s) 293, 391, 537, 540, 543, 688
Sau3AI GATC 9 cut(s) 91, 97, 314, 373, 634, 660, 745, 793, 822
SchI GAGTC 4 cut(s) 407, 644, 782, 827
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 2 cut(s) 470, 737
SfcI CTRYAG 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 5 cut(s) 117, 593, 677, 717, 817
SspMI CTAG 2 cut(s) 345, 851
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 3 cut(s) 313, 416, 737
TasI AATT 5 cut(s) 117, 593, 677, 717, 817
Tru1I TTAA 3 cut(s) 126, 483, 641
Tru9I TTAA 3 cut(s) 126, 483, 641
TscAI CASTG 2 cut(s) 308, 803
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 6 cut(s) 292, 390, 536, 539, 542, 687
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 5 cut(s) 335, 341, 530, 723, 770
TspRI CASTG 2 cut(s) 308, 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XspI CTAG 2 cut(s) 345, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.