Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Reverse (-)

25702763 .. 25704770

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1166700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGCTTCTTCAATGGCTATTTAGAGTCAAAGTTGGACAAGAAGGGGAGGAGATTTCTAGTTCTACCAACAAGAAAGCAACAACTAATGATCAAGAAGTTAAACCAAATTATGTAATCGTCTTTAGGCGCGGCAGCGTTGGTGTTTATCGAAAATCAAAAGGAGTTGAAGAAAGCAAATTGGGTAGCAAGAAGTTCAAGACATTTACATTTCTATGTCGAAAAGATGTGACAACTGCTTGCTTTTATAGCACTCTTCAGCTGAAGAGACTTAGTAGCATAAACAGAAGGCAGGCAAGGCAGCACTGGATTCAATCTATGAAGATCATGAAGAAAGACGATATTGCAGGAGGTCTAGGAATTAGTAGCACCAAGGCGGATTCGGCGAATGTAGGCAACAAGGTTTTACCGGTGACTGATTCAACGTTATCAACCTCAACGAGCACAAATGAACAATGTGGCACGTCAGAGAAGAAAGAAACGCTTAAAGGGGACAGAACCAAAACCCTGTCAAGAATGAAGGAGCTTCTGAGATGGGCTGCTGCTGCAAAATCAGAAAAGGGTGGAAAATACTTTGCTCGAAAGATTATGCAATTTCGAAACCGGGCAACTCTGAAAGCGGTAGCATATGATGATCGACTAAGCAACGATTTGCCGAAGATCAGCTTCAGATGGGATTTGGAGAGCTGCTCCACCACATCCTCTGCCTATACAGCACTTTCAACAGCATCTTCACTCAAGAATGATCAGATCATAAGCCTTCCATCTTTGAATTCGACAAAATTTCAACACCTGGTTGACTTGGAGCTCAAGAAAGAGAACTGGATCACCTCAGACTCAGAATTTGTAGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

32.31

Weight (kDa)

9.79

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	132, 377, 620
AclI	AACGTT	1 cut(s)	425
AclWI	GGATC	1 cut(s)	833
AcsI	RAATTY	3 cut(s)	772, 782, 842
AcuI	CTGAAG	3 cut(s)	242, 284, 652
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	8 cut(s)	14, 170, 199, 314, 423, 723, 772, 788
AjiI	CACGTC	1 cut(s)	465
AjnI	CCWGG	1 cut(s)	792
AluBI	AGCT	7 cut(s)	7, 262, 526, 666, 687, 808, 859
AluI	AGCT	7 cut(s)	7, 262, 526, 666, 687, 808, 859
Alw21I	GWGCWC	2 cut(s)	446, 810
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	833
ApeKI	GCWGC	7 cut(s)	4, 135, 301, 539, 542, 545, 687
ApoI	RAATTY	3 cut(s)	772, 782, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
AsiGI	ACCGGT	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	605
AsuHPI	GGTGA	2 cut(s)	424, 820
AsuII	TTCGAA	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	810
Bbv12I	GWGCWC	2 cut(s)	446, 810
BbvI	GCAGC	7 cut(s)	16, 147, 313, 526, 529, 532, 674
BccI	CCATC	3 cut(s)	528, 666, 772
BciT130I	CCWGG	1 cut(s)	794
BclI	TGATCA	2 cut(s)	91, 745
BcnI	CCSGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	3 cut(s)	60, 356, 854
BisI	GCNGC	8 cut(s)	5, 133, 136, 302, 540, 543, 546, 688
BlsI	GCNGC	8 cut(s)	6, 134, 137, 303, 541, 544, 547, 689
Bme1390I	CCNGG	2 cut(s)	605, 794
BmgBI	CACGTC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	605, 794
BmsI	GCATC	1 cut(s)	737
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
Bpu14I	TTCGAA	1 cut(s)	598
BpuEI	CTTGAG	2 cut(s)	722, 794
BpuMI	CCSGG	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	311, 827
BseBI	CCWGG	1 cut(s)	794
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	698
BseMII	CTCAG	3 cut(s)	521, 846, 852
BseNI	ACTGG	2 cut(s)	311, 827
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	7 cut(s)	16, 147, 313, 526, 529, 532, 674
Bsh1236I	CGCG	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	446, 810
BsiSI	CCGG	2 cut(s)	410, 604
BslFI	GGGAC	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	506
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	446, 810
Bsp143I	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
BspACI	CCGC	3 cut(s)	132, 377, 620
BspCNI	CTCAG	3 cut(s)	522, 845, 851
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	327
BspPI	GGATC	1 cut(s)	833
BspT104I	TTCGAA	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	311, 827
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	794
Bst6I	CTCTTC	2 cut(s)	260, 261
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	2 cut(s)	241, 294
BstDEI	CTNAG	5 cut(s)	272, 530, 641, 832, 838
BstF5I	GGATG	1 cut(s)	698
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	7 cut(s)	94, 327, 637, 663, 748, 753, 828
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
BstMWI	GCNNNNNNNGC	5 cut(s)	249, 298, 383, 545, 713
BstNI	CCWGG	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	603, 792
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	7 cut(s)	16, 147, 313, 526, 529, 532, 674
BtrI	CACGTC	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	698
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	241, 294
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	409
CsiI	ACCWGGT	1 cut(s)	792
CspAI	ACCGGT	1 cut(s)	409
CviAII	CATG	1 cut(s)	328
DdeI	CTNAG	5 cut(s)	272, 530, 641, 832, 838
DpnI	GATC	7 cut(s)	93, 326, 636, 662, 747, 752, 827
DpnII	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
Eam1104I	CTCTTC	2 cut(s)	260, 261
EarI	CTCTTC	2 cut(s)	260, 261
EciI	GGCGGA	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	810
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	3 cut(s)	242, 284, 652
EcoICRI	GAGCTC	1 cut(s)	808
EcoRI	GAATTC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	792
EcoT14I	CCWWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	331
FalI	AAGNNNNNCTT	4 cut(s)	468, 500, 650, 682
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	2 cut(s)	91, 745
Fnu4HI	GCNGC	8 cut(s)	5, 133, 136, 302, 540, 543, 546, 688
FokI	GGATG	1 cut(s)	685
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	8 cut(s)	5, 133, 136, 302, 540, 543, 546, 688
FspBI	CTAG	3 cut(s)	60, 356, 854
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	8 cut(s)	5, 133, 136, 302, 540, 543, 546, 688
HapII	CCGG	2 cut(s)	410, 604
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	5 cut(s)	27, 310, 380, 419, 836
HpaII	CCGG	2 cut(s)	410, 604
HphI	GGTGA	2 cut(s)	424, 820
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188I	TCNGA	8 cut(s)	469, 531, 556, 615, 671, 750, 835, 841
Hpy188III	TCNNGA	6 cut(s)	95, 199, 328, 513, 739, 811
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	4 cut(s)	38, 282, 514, 770
HpyCH4IV	ACGT	2 cut(s)	425, 464
HpyCH4V	TGCA	4 cut(s)	4, 347, 548, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	249, 298, 383, 545, 713
HpyF3I	CTNAG	5 cut(s)	272, 530, 641, 832, 838
HpySE526I	ACGT	2 cut(s)	425, 464
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	1 cut(s)	130
Ksp22I	TGATCA	2 cut(s)	91, 745
Kzo9I	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
LmnI	GCTCC	3 cut(s)	523, 695, 805
LpnPI	CCDG	9 cut(s)	278, 292, 333, 423, 521, 617, 779, 806, 808
Lsp1109I	GCAGC	7 cut(s)	16, 147, 313, 526, 529, 532, 674
LweI	GCATC	1 cut(s)	737
MabI	ACCWGGT	1 cut(s)	792
MaeI	CTAG	3 cut(s)	60, 356, 854
MaeII	ACGT	2 cut(s)	425, 464
MaeIII	GTNAC	2 cut(s)	229, 412
MalI	GATC	7 cut(s)	93, 326, 636, 662, 747, 752, 827
MboI	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
MboII	GAAGA	8 cut(s)	182, 248, 277, 334, 343, 484, 670, 723
MhlI	GDGCHC	2 cut(s)	446, 810
MluCI	AATT	7 cut(s)	109, 179, 360, 593, 772, 782, 842
MlyI	GAGTC	2 cut(s)	36, 830
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	43, 344, 445, 712, 841
MseI	TTAA	2 cut(s)	102, 486
MslI	CAYNNNNRTG	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	2 cut(s)	410, 604
MspR9I	CCNGG	2 cut(s)	605, 794
MvaI	CCWGG	1 cut(s)	794
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	5 cut(s)	249, 298, 383, 545, 713
NciI	CCSGG	1 cut(s)	605
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
NlaIII	CATG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	229, 412
NspV	TTCGAA	1 cut(s)	598
PagI	TCATGA	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	310, 380, 419
PinAI	ACCGGT	1 cut(s)	409
PkrI	GCNGC	8 cut(s)	6, 134, 137, 303, 541, 544, 547, 689
PleI	GAGTC	2 cut(s)	35, 830
PpsI	GAGTC	2 cut(s)	35, 830
Psp124BI	GAGCTC	1 cut(s)	810
Psp1406I	AACGTT	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	792
PspGI	CCWGG	1 cut(s)	792
PvuII	CAGCTG	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	102, 486
SatI	GCNGC	8 cut(s)	5, 133, 136, 302, 540, 543, 546, 688
Sau3AI	GATC	7 cut(s)	91, 324, 634, 660, 745, 750, 825
SchI	GAGTC	2 cut(s)	36, 830
ScrFI	CCNGG	2 cut(s)	605, 794
SduI	GDGCHC	2 cut(s)	446, 810
SexAI	ACCWGGT	1 cut(s)	792
SfaNI	GCATC	1 cut(s)	737
SfuI	TTCGAA	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	737, 809
SmoI	CTYRAG	2 cut(s)	737, 809
Sse9I	AATT	7 cut(s)	109, 179, 360, 593, 772, 782, 842
SsiI	CCGC	3 cut(s)	132, 377, 620
SspMI	CTAG	3 cut(s)	60, 356, 854
SstI	GAGCTC	1 cut(s)	810
StyD4I	CCNGG	2 cut(s)	603, 792
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	2 cut(s)	428, 467
TaqI	TCGA	6 cut(s)	151, 220, 580, 598, 637, 776
TasI	AATT	7 cut(s)	109, 179, 360, 593, 772, 782, 842
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	310, 380, 419
Tru1I	TTAA	2 cut(s)	102, 486
Tru9I	TTAA	2 cut(s)	102, 486
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	229, 412
TseI	GCWGC	7 cut(s)	4, 135, 301, 539, 542, 545, 687
Tsp45I	GTSAC	2 cut(s)	229, 412
TspDTI	ATGAA	4 cut(s)	335, 344, 465, 533
TspRI	CASTG	1 cut(s)	311
XapI	RAATTY	3 cut(s)	772, 782, 842
XspI	CTAG	3 cut(s)	60, 356, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.