Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Reverse (-)

47526795 .. 47527690

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATGCAGCTAATGTAGGCAGCAAGATTTTACCAGTAAGTGACTCGACGTTATCAACCTCTACTAACAAAAACCATGACCAACGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCATGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTCATCTTCATTGAAGAATGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTTCAAGACTCAGATGACTGGCAACCCAAGAATGGGAATTGGATCACTTCAGACTCTGACTTTGTTGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.58

Weight (kDa)

9.22

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	452, 453
AgsI	TTSAA	5 cut(s)	376, 401, 409, 414, 425
AluBI	AGCT	7 cut(s)	56, 199, 230, 342, 363, 421, 496
AluI	AGCT	7 cut(s)	56, 199, 230, 342, 363, 421, 496
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	5 cut(s)	53, 66, 212, 215, 218
ApoI	RAATTY	1 cut(s)	409
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
BbvI	GCAGC	5 cut(s)	65, 78, 199, 202, 230
BccI	CCATC	2 cut(s)	201, 342
BclI	TGATCA	2 cut(s)	310, 382
BfaI	CTAG	2 cut(s)	21, 491
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	5 cut(s)	54, 67, 213, 216, 219
BlsI	GCNGC	5 cut(s)	55, 68, 214, 217, 220
BmsI	GCATC	2 cut(s)	40, 146
BsaBI	GATNNNNATC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 453
Bse1I	ACTGG	3 cut(s)	80, 296, 443
Bse3DI	GCAATG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	309
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	452, 453
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	80, 296, 443
BseXI	GCAGC	5 cut(s)	65, 78, 199, 202, 230
BshFI	GGCC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	452, 453
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	310, 336, 382, 462
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	443
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	80, 296, 443
BssMI	GATC	4 cut(s)	310, 336, 382, 462
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	4 cut(s)	313, 339, 385, 465
BstMBI	GATC	4 cut(s)	310, 336, 382, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 227
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	5 cut(s)	65, 78, 199, 202, 230
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	2 cut(s)	122, 281
CviJI	RGCY	9 cut(s)	56, 199, 212, 230, 255, 342, 363, 421, 496
CviKI_1	RGCY	9 cut(s)	56, 199, 212, 230, 255, 342, 363, 421, 496
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	4 cut(s)	312, 338, 384, 464
DpnII	GATC	4 cut(s)	310, 336, 382, 462
EaeI	YGGCCR	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	409
FaeI	CATG	2 cut(s)	125, 284
FaiI	YATR	4 cut(s)	123, 282, 392, 499
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 352, 384
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	121, 280
FbaI	TGATCA	2 cut(s)	310, 382
Fnu4HI	GCNGC	5 cut(s)	54, 67, 213, 216, 219
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	5 cut(s)	54, 67, 213, 216, 219
FspBI	CTAG	2 cut(s)	21, 491
GluI	GCNGC	5 cut(s)	54, 67, 213, 216, 219
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	125, 284
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	4 cut(s)	89, 326, 428, 473
Hpy188I	TCNGA	4 cut(s)	142, 433, 472, 478
Hpy188III	TCNNGA	2 cut(s)	186, 425
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	95, 130
HpyCH4V	TGCA	3 cut(s)	53, 218, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 227
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	2 cut(s)	95, 130
Hsp92II	CATG	2 cut(s)	125, 284
Ksp22I	TGATCA	2 cut(s)	310, 382
Kzo9I	GATC	4 cut(s)	310, 336, 382, 462
LmnI	GCTCC	2 cut(s)	134, 196
LpnPI	CCDG	4 cut(s)	93, 309, 315, 424
Lsp1109I	GCAGC	5 cut(s)	65, 78, 199, 202, 230
LweI	GCATC	2 cut(s)	40, 146
MaeI	CTAG	2 cut(s)	21, 491
MaeII	ACGT	2 cut(s)	95, 130
MaeIII	GTNAC	2 cut(s)	38, 86
MalI	GATC	4 cut(s)	312, 338, 384, 464
MboI	GATC	4 cut(s)	310, 336, 382, 462
MboII	GAAGA	4 cut(s)	16, 23, 360, 388
MluCI	AATT	5 cut(s)	269, 353, 387, 409, 457
MlyI	GAGTC	4 cut(s)	83, 320, 422, 467
MnlI	CCTC	2 cut(s)	17, 115
MseI	TTAA	2 cut(s)	159, 317
MspA1I	CMGCKG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	218, 227
NdeII	GATC	4 cut(s)	310, 336, 382, 462
NlaIII	CATG	2 cut(s)	125, 284
NmuCI	GTSAC	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	55, 68, 214, 217, 220
PleI	GAGTC	4 cut(s)	83, 320, 422, 467
PpsI	GAGTC	4 cut(s)	83, 320, 422, 467
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	159, 317
SatI	GCNGC	5 cut(s)	54, 67, 213, 216, 219
Sau3AI	GATC	4 cut(s)	310, 336, 382, 462
SchI	GAGTC	4 cut(s)	83, 320, 422, 467
SfaNI	GCATC	2 cut(s)	40, 146
SfcI	CTRYAG	1 cut(s)	216
Sse9I	AATT	5 cut(s)	269, 353, 387, 409, 457
SspMI	CTAG	2 cut(s)	21, 491
TaiI	ACGT	2 cut(s)	98, 133
TaqI	TCGA	1 cut(s)	92
TasI	AATT	5 cut(s)	269, 353, 387, 409, 457
Tru1I	TTAA	2 cut(s)	159, 317
Tru9I	TTAA	2 cut(s)	159, 317
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	5 cut(s)	53, 66, 212, 215, 218
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	4 cut(s)	17, 206, 360, 407
XapI	RAATTY	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XspI	CTAG	2 cut(s)	21, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.