Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Reverse (-)

47418133 .. 47419524

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCAGTTTCTTCGATGGCTTTCTAAAGTTACACAAGGACAGCAAGAGAGGAGATTTCTCCTACCAACAAGAAAAAAGAAATTAAACTACATAATTGTCTTTAAGAGTGGGGGTGTTAGTGTCTATCAAAAAACAAAAGGATTTGAAGAAAGCAAACGCGCTCGTAAGAAGTTCAAGCCATTTGCCTTTCTGTGTAGAAAGGATATAGCACAGGCTTGCTTTGATAGTACTCTTCATTTGAGGAGACTTGATAGCATAAATAGGAGGCAGCAAAAGCAGTGTTGGGCTCGATCCATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATGCAGCTAATGTAGGCAGCAAGGTTTTACCAGTAAGTGACTCGACGTTATCAACCTCTACTAACAAAAACCATGACCAACGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATAGGCCGAAAGGTTCTGCAATTTCGCAATCATGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCTGCCTACTCGGCAATTTCTGTAGCATCTTCATTGAAGAATGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTTCAGGACTCAGATCACTGGCAACCCAAGAATGGGAATTGGATCACTTCAGACTCTGACTTTGTTGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.85

Weight (kDa)

10.05

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AclWI	GGATC	2 cut(s)	285, 809
AcsI	RAATTY	1 cut(s)	748
AcuI	CTGAAG	2 cut(s)	746, 792
AfaI	GTAC	2 cut(s)	229, 600
AfiI	CCNNNNNNNGG	2 cut(s)	791, 792
AgsI	TTSAA	6 cut(s)	146, 175, 715, 740, 748, 753
AluBI	AGCT	7 cut(s)	356, 499, 530, 642, 663, 760, 835
AluI	AGCT	7 cut(s)	356, 499, 530, 642, 663, 760, 835
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	285, 809
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	7 cut(s)	268, 353, 366, 512, 515, 518, 663
ApoI	RAATTY	1 cut(s)	748
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AspLEI	GCGC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	289
BbvI	GCAGC	7 cut(s)	280, 365, 378, 499, 502, 530, 650
BccI	CCATC	3 cut(s)	9, 501, 642
BcgI	CGANNNNNNTGC	1 cut(s)	27
BclI	TGATCA	2 cut(s)	610, 721
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	321, 830
BfmI	CTRYAG	2 cut(s)	516, 699
BglI	GCCNNNNNGGC	1 cut(s)	689
BisI	GCNGC	7 cut(s)	269, 354, 367, 513, 516, 519, 664
BlsI	GCNGC	7 cut(s)	270, 355, 368, 514, 517, 520, 665
BmcAI	AGTACT	1 cut(s)	229
BmsI	GCATC	3 cut(s)	340, 446, 713
BsaBI	GATNNNNATC	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	2 cut(s)	791, 792
Bse1I	ACTGG	3 cut(s)	380, 596, 782
Bse3DI	GCAATG	1 cut(s)	628
Bse8I	GATNNNNATC	1 cut(s)	609
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	791, 792
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	3 cut(s)	380, 596, 782
BseRI	GAGGAG	2 cut(s)	64, 256
BseXI	GCAGC	7 cut(s)	280, 365, 378, 499, 502, 530, 650
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	791, 792
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	782
BspFNI	CGCG	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	2 cut(s)	285, 809
BsrDI	GCAATG	1 cut(s)	628
BsrI	ACTGG	3 cut(s)	380, 596, 782
BssMI	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	769
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	6 cut(s)	293, 613, 639, 724, 775, 804
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 518, 527, 689
BstSFI	CTRYAG	2 cut(s)	516, 699
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	7 cut(s)	280, 365, 378, 499, 502, 530, 650
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	284, 775
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	815
CfoI	GCGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	228, 599
CviAII	CATG	3 cut(s)	295, 422, 581
CviQI	GTAC	2 cut(s)	228, 599
DdeI	CTNAG	1 cut(s)	769
DpnI	GATC	6 cut(s)	292, 612, 638, 723, 774, 803
DpnII	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	746, 792
EcoRI	GAATTC	1 cut(s)	748
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	3 cut(s)	298, 425, 584
FaiI	YATR	9 cut(s)	92, 206, 257, 296, 423, 551, 582, 731, 838
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	3 cut(s)	294, 421, 580
FbaI	TGATCA	2 cut(s)	610, 721
Fnu4HI	GCNGC	7 cut(s)	269, 354, 367, 513, 516, 519, 664
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	7 cut(s)	269, 354, 367, 513, 516, 519, 664
FspBI	CTAG	2 cut(s)	321, 830
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	7 cut(s)	269, 354, 367, 513, 516, 519, 664
HaeIII	GGCC	1 cut(s)	555
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	298, 425, 584
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	4 cut(s)	389, 626, 767, 812
Hpy188I	TCNGA	4 cut(s)	442, 772, 811, 817
Hpy188III	TCNNGA	2 cut(s)	486, 764
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	487
HpyCH4IV	ACGT	2 cut(s)	395, 430
HpyCH4V	TGCA	4 cut(s)	4, 353, 518, 568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 518, 527, 689
HpyF3I	CTNAG	1 cut(s)	769
HpySE526I	ACGT	2 cut(s)	395, 430
Hsp92II	CATG	3 cut(s)	298, 425, 584
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	2 cut(s)	610, 721
Kzo9I	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
LmnI	GCTCC	3 cut(s)	434, 496, 671
LpnPI	CCDG	6 cut(s)	197, 393, 609, 615, 749, 763
Lsp1109I	GCAGC	7 cut(s)	280, 365, 378, 499, 502, 530, 650
LweI	GCATC	3 cut(s)	340, 446, 713
MaeI	CTAG	2 cut(s)	321, 830
MaeII	ACGT	2 cut(s)	395, 430
MaeIII	GTNAC	3 cut(s)	28, 338, 386
MalI	GATC	6 cut(s)	292, 612, 638, 723, 774, 803
MboI	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
MboII	GAAGA	7 cut(s)	158, 224, 310, 316, 323, 699, 727
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	8 cut(s)	80, 93, 569, 653, 693, 726, 748, 796
MlyI	GAGTC	4 cut(s)	383, 620, 761, 806
MnlI	CCTC	6 cut(s)	42, 234, 258, 317, 415, 688
MseI	TTAA	4 cut(s)	83, 102, 459, 617
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	274, 518, 527, 689
NdeII	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
NlaIII	CATG	3 cut(s)	298, 425, 584
NmeAIII	GCCGAG	1 cut(s)	668
NmuCI	GTSAC	1 cut(s)	386
PkrI	GCNGC	7 cut(s)	270, 355, 368, 514, 517, 520, 665
PleI	GAGTC	4 cut(s)	383, 620, 761, 806
PpsI	GAGTC	4 cut(s)	383, 620, 761, 806
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	229, 600
RsaNI	GTAC	2 cut(s)	228, 599
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	83, 102, 459, 617
SatI	GCNGC	7 cut(s)	269, 354, 367, 513, 516, 519, 664
Sau3AI	GATC	6 cut(s)	290, 610, 636, 721, 772, 801
ScaI	AGTACT	1 cut(s)	229
SchI	GAGTC	4 cut(s)	383, 620, 761, 806
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	3 cut(s)	340, 446, 713
SfcI	CTRYAG	2 cut(s)	516, 699
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	8 cut(s)	80, 93, 569, 653, 693, 726, 748, 796
SspMI	CTAG	2 cut(s)	321, 830
TaiI	ACGT	2 cut(s)	398, 433
TaqI	TCGA	3 cut(s)	13, 289, 392
TasI	AATT	8 cut(s)	80, 93, 569, 653, 693, 726, 748, 796
TatI	WGTACW	1 cut(s)	227
Tru1I	TTAA	4 cut(s)	83, 102, 459, 617
Tru9I	TTAA	4 cut(s)	83, 102, 459, 617
TscAI	CASTG	2 cut(s)	284, 782
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	7 cut(s)	268, 353, 366, 512, 515, 518, 663
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	6 cut(s)	224, 311, 317, 506, 699, 746
TspRI	CASTG	2 cut(s)	284, 782
XapI	RAATTY	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XspI	CTAG	2 cut(s)	321, 830
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.