Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002431

Physical Location & Seq

Genomic Coordinates Reverse (-)

19201541 .. 19206944

Gene Structure 5404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G205000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGCTGGTGTGAAACGAAGAATAGAAACTGATTCAGATATTCGTGCTCTTTACAAAGAACTGGATGCGGTTACATGCCCTATCTGCATGGACCATCCACATAATGCAGTTCTCCTCCTTTGCAGCTCGCATGAGAAGGGTTGCAGATCTTATATTTGTGATACAAGTTACAGGCATTCAAATTGCCTGGACCGTTTTAAAAAGCTGAGGGAAAATACTAGGAACAGTCCAACTCTACCCAGTTCTTTACCTGAAAGGGTTGAGCATGATGAGTTGGATGGGGAGAATTCACCAGATTCAAAACTGAGCTTGAAATGCCCTTTGTGCCGAGGAGCCATTCTTGGATGGGAGGTTGTAGAAGATGTCAGAAAGTATCTTAACCTGAAGAAGCGAAGTTGCTCTCGTGAATCATGCTCATTTTCTGGTAACTACCAGGAGTTGCGCCGGCATGCCAGAAGAGTTCACCCAACCACTCGACCCTCCGACATTGACCCATCTAGAGAACGAGCCTGGCAACACCTTGAGCACCAAAGAGAATTTGGTGATGTTGTGAGTGCTATTCATTCAGCCATCCCAGGTGCTGTTGTGGTTGGGGACTATGTTATTGAAAATGGAGATAGACTAGCAGGGGGAGGGGAAAGTGGTGCAGCAAGGGAAGACACTTCTGGTTCTATCAACAAGAAAGCAACAACTAATGATCAAGAAGCTAAACCAAATTACATAATTGTCTTTAAGTGTGGCGGTGTTGGTGTGTATTGGAAATTCAAAGGAATTGAAGAGAGAAAATCAGGTAGTAAGAAGTTCAAGCCACTTGCCTTTCTACGTCGAAAGGATGTGGCAAAGGCTTGCTTTTATAGCACTCTTCAGTTAAAGAGACTTGGTAGCATAAATAGAAGGCAGGCTAGGCAGCGTTGGATTCAATCCATGAAGATGAAGAAGGAAGATATTGCAAGAGGTCTGGGAATTAGTACCAAGGCAGATTCGGCAAATGTAGGCAACAAGGTGTTACCGGTGACAGATTCAACATTAACAACCTCAACGAACACAAATGAACAATGTGGCACATCAGAAAAGAAAGAAAGGGTTAAGGGAGACAAAACCAAAACCATGTCAAGAATGAAGGAGCTATTGAGATGGGCTGCTGCTGCAAAATCAGAGAGGGGAGGAAAATTTATTGCTCGAAAGGTTATGCAATTTCGAAACCGTGGAACTCTGAAGGCAGTACCAGATGATGATCAACTTAGCAACGATTCGCCGAAGATCAGCTTTAGATGGGATTTGGAAAGCTGCTCCACCACTTCCTCTGCCTACACATCAATTTCAACGGCATCTTCATTGAAAAATGATCAAATCATGATCATTAACCAGGCTTTGAATTCAACAAAGTGTCAAGACCCTGATCGGGCTCCAAGGAAAGGGAACTGGATCACCTCAGACTCAGAATTTGTGGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

488

Amino Acids

54.66

Weight (kDa)

9.43

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740
fragaria_vesca	FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370
malus_domestica	MD05G1178600.v1.1 MD10G1166800.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1
pyrus_communis	pycom10g14380
rosa_chinensis	RchiOBHm_Chr6g0285161
rosa_laevigata	RLG00000012667
rosa_multiflora	Rmu_sc0006801.1_g000001 Rmu_sc0022341.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183590 Rroxscaffold_7G00183980
rosa_rugosa	Rorug06G0172400 Rorug06G0172500 Rorug06G0172500 Rorug06G0172600 Rorug06G0172700 Rorug06G0172800 Rorug06G0172900 Rorug06G0172900
rosa_samantha	Rh6AG282800 Rh6BG283600 Rh6CG285500 Rh6DG278600
rosa_wichuraiana	Rw6G024320 Rw6G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	68, 741
AclWI	GGATC	1 cut(s)	1433
AcsI	RAATTY	6 cut(s)	286, 536, 761, 1169, 1375, 1442
AcuI	CTGAAG	3 cut(s)	404, 848, 1235
AfaI	GTAC	2 cut(s)	970, 1224
AfiI	CCNNNNNNNGG	2 cut(s)	1402, 1415
AgeI	ACCGGT	1 cut(s)	1009
AjnI	CCWGG	5 cut(s)	186, 432, 509, 574, 1365
AluBI	AGCT	8 cut(s)	126, 205, 309, 707, 1126, 1266, 1287, 1459
AluI	AGCT	8 cut(s)	126, 205, 309, 707, 1126, 1266, 1287, 1459
Alw21I	GWGCWC	2 cut(s)	49, 528
Alw26I	GTCTC	2 cut(s)	868, 1086
AlwI	GGATC	1 cut(s)	1433
AlwNI	CAGNNNCTG	1 cut(s)	581
ApeKI	GCWGC	7 cut(s)	123, 647, 907, 1139, 1142, 1145, 1287
ApoI	RAATTY	6 cut(s)	286, 536, 761, 1169, 1375, 1442
ArsI	GACNNNNNNTTYG	2 cut(s)	1427, 1459
AsiGI	ACCGGT	1 cut(s)	1009
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	91, 190
AsuHPI	GGTGA	5 cut(s)	282, 455, 554, 1024, 1420
AsuII	TTCGAA	1 cut(s)	1198
AvaII	GGWCC	2 cut(s)	91, 190
BanII	GRGCYC	1 cut(s)	1408
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	49, 528
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	7 cut(s)	135, 659, 919, 1126, 1129, 1132, 1274
BccI	CCATC	7 cut(s)	102, 272, 339, 502, 578, 1128, 1266
BceAI	ACGGC	1 cut(s)	1341
BciT130I	CCWGG	5 cut(s)	188, 434, 511, 576, 1367
BclI	TGATCA	4 cut(s)	697, 1234, 1345, 1356
BcoDI	GTCTC	2 cut(s)	868, 1086
BfaI	CTAG	5 cut(s)	219, 498, 623, 903, 1454
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	7 cut(s)	124, 648, 908, 1140, 1143, 1146, 1288
BlsI	GCNGC	7 cut(s)	125, 649, 909, 1141, 1144, 1147, 1289
Bme1390I	CCNGG	5 cut(s)	188, 434, 511, 576, 1367
Bme18I	GGWCC	2 cut(s)	91, 190
BmgT120I	GGNCC	2 cut(s)	91, 190
BmiI	GGNNCC	2 cut(s)	334, 1407
BmrFI	CCNGG	5 cut(s)	188, 434, 511, 576, 1367
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	55, 1337
BmuI	ACTGGG	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	1198
BpuEI	CTTGAG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	1233
BsaJI	CCNNGG	5 cut(s)	328, 574, 972, 1204, 1409
BsaWI	WCCGGW	1 cut(s)	1009
Bsc4I	CCNNNNNNNGG	2 cut(s)	1402, 1415
Bse118I	RCCGGY	2 cut(s)	444, 1009
Bse1I	ACTGG	3 cut(s)	66, 240, 1427
Bse8I	GATNNNNATC	1 cut(s)	1233
BseBI	CCWGG	5 cut(s)	188, 434, 511, 576, 1367
BseDI	CCNNGG	5 cut(s)	328, 574, 972, 1204, 1409
BseGI	GGATG	6 cut(s)	70, 94, 283, 350, 570, 838
BseJI	GATNNNNATC	1 cut(s)	1233
BseLI	CCNNNNNNNGG	2 cut(s)	1402, 1415
BseMII	CTCAG	4 cut(s)	197, 296, 1446, 1452
BseNI	ACTGG	3 cut(s)	66, 240, 1427
BseRI	GAGGAG	2 cut(s)	104, 345
BseXI	GCAGC	7 cut(s)	135, 659, 919, 1126, 1129, 1132, 1274
BsgI	GTGCAG	1 cut(s)	666
BshTI	ACCGGT	1 cut(s)	1009
BsiHKAI	GWGCWC	2 cut(s)	49, 528
BsiSI	CCGG	2 cut(s)	445, 1010
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	1402, 1415
BsmAI	GTCTC	2 cut(s)	868, 1086
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	1198
Bsp1286I	GDGCHC	3 cut(s)	49, 528, 1408
Bsp143I	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
BspACI	CCGC	2 cut(s)	68, 741
BspCNI	CTCAG	4 cut(s)	198, 297, 1445, 1451
BspHI	TCATGA	1 cut(s)	1353
BspLI	GGNNCC	2 cut(s)	334, 1407
BspPI	GGATC	1 cut(s)	1433
BspT104I	TTCGAA	1 cut(s)	1198
BsrFI	RCCGGY	2 cut(s)	444, 1009
BsrI	ACTGG	3 cut(s)	66, 240, 1427
BssAI	RCCGGY	2 cut(s)	444, 1009
BssECI	CCNNGG	5 cut(s)	328, 574, 972, 1204, 1409
BssMI	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	972, 1409
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	5 cut(s)	188, 434, 511, 576, 1367
Bst4CI	ACNGT	3 cut(s)	194, 227, 1205
Bst6I	CTCTTC	3 cut(s)	451, 771, 867
BstBI	TTCGAA	1 cut(s)	1198
BstC8I	GCNNGC	5 cut(s)	128, 446, 450, 847, 900
BstDEI	CTNAG	5 cut(s)	206, 305, 1241, 1432, 1438
BstDSI	CCRYGG	1 cut(s)	1204
BstF5I	GGATG	6 cut(s)	70, 94, 283, 350, 570, 838
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	8 cut(s)	149, 700, 1237, 1263, 1348, 1359, 1402, 1428
BstMAI	GTCTC	2 cut(s)	868, 1086
BstMBI	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 315, 324, 855, 904, 983, 1145
BstNI	CCWGG	5 cut(s)	188, 434, 511, 576, 1367
BstNSI	RCATGY	2 cut(s)	78, 452
BstSCI	CCNGG	5 cut(s)	186, 432, 509, 574, 1365
BstV1I	GCAGC	7 cut(s)	135, 659, 919, 1126, 1129, 1132, 1274
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	1204
BtsCI	GGATG	6 cut(s)	70, 94, 283, 350, 570, 838
Cac8I	GCNNGC	5 cut(s)	128, 446, 450, 847, 900
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	1 cut(s)	1353
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	2 cut(s)	444, 1009
Cfr13I	GGNCC	2 cut(s)	91, 190
Csp6I	GTAC	2 cut(s)	969, 1223
CspAI	ACCGGT	1 cut(s)	1009
CviAII	CATG	9 cut(s)	75, 88, 131, 266, 411, 449, 925, 1108, 1354
CviQI	GTAC	2 cut(s)	969, 1223
DdeI	CTNAG	5 cut(s)	206, 305, 1241, 1432, 1438
DpnI	GATC	8 cut(s)	148, 699, 1236, 1262, 1347, 1358, 1401, 1427
DpnII	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
DraI	TTTAAA	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	451, 771, 867
EarI	CTCTTC	3 cut(s)	451, 771, 867
Eco130I	CCWWGG	2 cut(s)	972, 1409
Eco24I	GRGCYC	1 cut(s)	1408
Eco47I	GGWCC	2 cut(s)	91, 190
Eco57I	CTGAAG	3 cut(s)	404, 848, 1235
EcoRI	GAATTC	2 cut(s)	286, 1375
EcoRII	CCWGG	5 cut(s)	186, 432, 509, 574, 1365
EcoT14I	CCWWGG	2 cut(s)	972, 1409
EcoT38I	GRGCYC	1 cut(s)	1408
ErhI	CCWWGG	2 cut(s)	972, 1409
FaeI	CATG	9 cut(s)	78, 91, 134, 269, 414, 452, 928, 1111, 1357
FalI	AAGNNNNNCTT	4 cut(s)	833, 865, 1250, 1282
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	9 cut(s)	74, 87, 130, 265, 410, 448, 924, 1107, 1353
FbaI	TGATCA	4 cut(s)	697, 1234, 1345, 1356
Fnu4HI	GCNGC	7 cut(s)	124, 648, 908, 1140, 1143, 1146, 1288
FokI	GGATG	6 cut(s)	77, 81, 290, 357, 557, 845
FriOI	GRGCYC	1 cut(s)	1408
Fsp4HI	GCNGC	7 cut(s)	124, 648, 908, 1140, 1143, 1146, 1288
FspBI	CTAG	5 cut(s)	219, 498, 623, 903, 1454
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	7 cut(s)	124, 648, 908, 1140, 1143, 1146, 1288
HapII	CCGG	2 cut(s)	445, 1010
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	9 cut(s)	78, 91, 134, 269, 414, 452, 928, 1111, 1357
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	8 cut(s)	32, 296, 407, 916, 980, 1019, 1250, 1436
HpaII	CCGG	2 cut(s)	445, 1010
HphI	GGTGA	5 cut(s)	282, 455, 554, 1024, 1420
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	8 cut(s)	37, 368, 484, 1069, 1156, 1215, 1435, 1441
Hpy188III	TCNNGA	6 cut(s)	404, 498, 701, 1113, 1354, 1391
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	1 cut(s)	828
HpyAV	CCTTC	5 cut(s)	130, 888, 931, 1114, 1210
HpyCH4III	ACNGT	3 cut(s)	194, 227, 1205
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	8 cut(s)	87, 107, 123, 144, 647, 950, 1148, 1192
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 315, 324, 855, 904, 983, 1145
HpyF3I	CTNAG	5 cut(s)	206, 305, 1241, 1432, 1438
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	9 cut(s)	78, 91, 134, 269, 414, 452, 928, 1111, 1357
HspAI	GCGC	1 cut(s)	442
KroI	GCCGGC	1 cut(s)	444
KroNI	GCCGGC	1 cut(s)	446
Ksp22I	TGATCA	4 cut(s)	697, 1234, 1345, 1356
Kzo9I	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
LmnI	GCTCC	4 cut(s)	332, 1123, 1295, 1411
Lsp1109I	GCAGC	7 cut(s)	135, 659, 919, 1126, 1129, 1132, 1274
LweI	GCATC	2 cut(s)	55, 1337
MaeI	CTAG	5 cut(s)	219, 498, 623, 903, 1454
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	5 cut(s)	70, 167, 425, 1005, 1012
MalI	GATC	8 cut(s)	148, 699, 1236, 1262, 1347, 1358, 1401, 1427
MboI	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	3 cut(s)	49, 528, 1408
MlyI	GAGTC	1 cut(s)	1430
MmeI	TCCRAC	4 cut(s)	254, 255, 507, 893
MroNI	GCCGGC	1 cut(s)	444
MseI	TTAA	7 cut(s)	198, 378, 732, 869, 1028, 1086, 1362
MslI	CAYNNNNRTG	1 cut(s)	929
MspI	CCGG	2 cut(s)	445, 1010
MspR9I	CCNGG	5 cut(s)	188, 434, 511, 576, 1367
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	5 cut(s)	188, 434, 511, 576, 1367
MwoI	GCNNNNNNNGC	7 cut(s)	84, 315, 324, 855, 904, 983, 1145
NaeI	GCCGGC	1 cut(s)	446
NdeII	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
NgoMIV	GCCGGC	1 cut(s)	444
NlaIII	CATG	9 cut(s)	78, 91, 134, 269, 414, 452, 928, 1111, 1357
NlaIV	GGNNCC	2 cut(s)	334, 1407
NmeAIII	GCCGAG	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	1012
NspI	RCATGY	2 cut(s)	78, 452
NspV	TTCGAA	1 cut(s)	1198
PaeI	GCATGC	1 cut(s)	452
PagI	TCATGA	1 cut(s)	1353
PctI	GAATGC	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	446
PfeI	GAWTC	7 cut(s)	32, 296, 407, 916, 980, 1019, 1250
PinAI	ACCGGT	1 cut(s)	1009
PkrI	GCNGC	7 cut(s)	125, 649, 909, 1141, 1144, 1147, 1289
PleI	GAGTC	1 cut(s)	1430
PpsI	GAGTC	1 cut(s)	1430
Psp6I	CCWGG	5 cut(s)	186, 432, 509, 574, 1365
PspGI	CCWGG	5 cut(s)	186, 432, 509, 574, 1365
PspN4I	GGNNCC	2 cut(s)	334, 1407
PspPI	GGNCC	2 cut(s)	91, 190
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	2 cut(s)	970, 1224
RsaNI	GTAC	2 cut(s)	969, 1223
RseI	CAYNNNNRTG	1 cut(s)	929
SaqAI	TTAA	7 cut(s)	198, 378, 732, 869, 1028, 1086, 1362
SatI	GCNGC	7 cut(s)	124, 648, 908, 1140, 1143, 1146, 1288
Sau3AI	GATC	8 cut(s)	146, 697, 1234, 1260, 1345, 1356, 1399, 1425
Sau96I	GGNCC	2 cut(s)	91, 190
SchI	GAGTC	1 cut(s)	1430
ScrFI	CCNGG	5 cut(s)	188, 434, 511, 576, 1367
SduI	GDGCHC	3 cut(s)	49, 528, 1408
SfaNI	GCATC	2 cut(s)	55, 1337
SfuI	TTCGAA	1 cut(s)	1198
SinI	GGWCC	2 cut(s)	91, 190
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	452
SsiI	CCGC	2 cut(s)	68, 741
SspMI	CTAG	5 cut(s)	219, 498, 623, 903, 1454
StyD4I	CCNGG	5 cut(s)	186, 432, 509, 574, 1365
StyI	CCWWGG	2 cut(s)	972, 1409
TaaI	ACNGT	3 cut(s)	194, 227, 1205
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	4 cut(s)	475, 826, 1180, 1198
TfiI	GAWTC	7 cut(s)	32, 296, 407, 916, 980, 1019, 1250
Tru1I	TTAA	7 cut(s)	198, 378, 732, 869, 1028, 1086, 1362
Tru9I	TTAA	7 cut(s)	198, 378, 732, 869, 1028, 1086, 1362
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	7 cut(s)	123, 647, 907, 1139, 1142, 1145, 1287
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	6 cut(s)	551, 941, 947, 1065, 1133, 1323
VpaK11BI	GGWCC	2 cut(s)	91, 190
XapI	RAATTY	6 cut(s)	286, 536, 761, 1169, 1375, 1442
XbaI	TCTAGA	1 cut(s)	497
XceI	RCATGY	2 cut(s)	78, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XspI	CTAG	5 cut(s)	219, 498, 623, 903, 1454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.