Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002431

Physical Location & Seq

Genomic Coordinates Forward (+)

25493716 .. 25494763

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAAAGCTTTCAAGAGATTGAGAATGACTTCCATGAAGATCAAGATGATCGAAGTAGGAGGCATCATAAATTACAAAAGAGTAGTAGGGATCATGTTTGTAAGGTATGTGGCAAGAGATTCGAAACTGGAAACGGTTTAGGAGGTCACAAAAGAATTCACAATCTTCTTCTTCCCAATAAGAAGATCAACAAGTTTAAGGCAAACGAGCAAGTATGCCATCCTTCTTCCCGAGATTACTTGAAGGATGCCAGACGGCTTCAAGCTCTGTCTGTTAGTCCTTCTCAATCTTCTTCCTCCTCTACATCCTCTTCTTGGTGCGAATCATCATCCTCCGATCTTACAGAGTCAGATAGTGATCCAGAAAAGTCCTTACCAATCTGGGGCAGGAAAGATGTCAGAGGCAGGAGTAGCACTTGCACACGTAGTACAACTACTCTAATTGCTAACCAAGCAGTAACTAATAAACCCAGGGAGGCAGCTAAAATTAAAAGAGATGAGACTAGTTGGAGTGATAAGATCGTGAAGCCAAAGAAGATGATGATGTGGTCAAATTTGGAGAAAAGTAGAAAACATGTATGTGAGATTTGCTATAAGGAGTTTCCGACGGGGCAGGCTCTTGGCGGTCACAAGAGTTCTCACTACTACTATCCAGGTTCAACAGCAGCAGCAACATCAGTACGGGAAGTTCCTGGGGTTGATCAAGTAGTATCCAATGAAGATAAAGAAGCAAGTAGGCCTACCATAAGTCGTGAAACATTCGAGTTTGATCTCAATGAAATTCCTTCTGAAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

266

Amino Acids

30.1

Weight (kDa)

8.87

Isoelectric Point (pI)

68.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	32 - 54	5.6e-08	C2H2-type zinc finger
zf-C2H2_6	PF13912	192 - 214	1.4e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740
fragaria_vesca	FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370
malus_domestica	MD05G1178600.v1.1 MD10G1166800.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1
pyrus_communis	pycom10g14380
rosa_chinensis	RchiOBHm_Chr6g0285161
rosa_laevigata	RLG00000012667
rosa_multiflora	Rmu_sc0006801.1_g000001 Rmu_sc0022341.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183590 Rroxscaffold_7G00183980
rosa_rugosa	Rorug06G0172400 Rorug06G0172500 Rorug06G0172500 Rorug06G0172600 Rorug06G0172700 Rorug06G0172800 Rorug06G0172900 Rorug06G0172900
rosa_samantha	Rh6AG282800 Rh6BG283600 Rh6CG285500 Rh6DG278600
rosa_wichuraiana	Rw6G024320 Rw6G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	624
AclWI	GGATC	2 cut(s)	99, 353
AcsI	RAATTY	3 cut(s)	156, 553, 780
AfaI	GTAC	2 cut(s)	430, 681
AfiI	CCNNNNNNNGG	2 cut(s)	315, 383
AflIII	ACRYGT	2 cut(s)	422, 574
AgsI	TTSAA	4 cut(s)	14, 244, 263, 660
AhlI	ACTAGT	1 cut(s)	503
AjnI	CCWGG	3 cut(s)	470, 652, 691
AluBI	AGCT	3 cut(s)	9, 266, 482
AluI	AGCT	3 cut(s)	9, 266, 482
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	99, 353
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	737
ApeKI	GCWGC	3 cut(s)	479, 665, 668
ApoI	RAATTY	3 cut(s)	156, 553, 780
Asp700I	GAANNNNTTC	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	491, 677, 680
BccI	CCATC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	3 cut(s)	472, 654, 693
BciVI	GTATCC	1 cut(s)	721
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	494
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	3 cut(s)	480, 666, 669
BlsI	GCNGC	3 cut(s)	481, 667, 670
Bme1390I	CCNGG	3 cut(s)	472, 654, 693
BmeT110I	CYCGRG	1 cut(s)	231
BmrFI	CCNGG	3 cut(s)	472, 654, 693
BmsI	GCATC	2 cut(s)	73, 238
Bpu14I	TTCGAA	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	470, 471, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 383
Bse1I	ACTGG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	472, 654, 693
BseDI	CCNNGG	3 cut(s)	470, 471, 692
BseGI	GGATG	4 cut(s)	220, 253, 305, 329
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	315, 383
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	3 cut(s)	491, 677, 680
BshFI	GGCC	1 cut(s)	739
BsiHKCI	CYCGRG	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	315, 383
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	739
BsoBI	CYCGRG	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	123
Bsp143I	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	1 cut(s)	739
BspPI	GGATC	2 cut(s)	99, 353
BspT104I	TTCGAA	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	470, 471, 692
BssMI	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
Bst2UI	CCWGG	3 cut(s)	472, 654, 693
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	316, 786
BstBAI	YACGTR	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	615
BstF5I	GGATG	4 cut(s)	220, 253, 305, 329
BstKTI	GATC	9 cut(s)	43, 52, 94, 189, 340, 361, 522, 703, 772
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	411, 452
BstNI	CCWGG	3 cut(s)	472, 654, 693
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	3 cut(s)	470, 652, 691
BstV1I	GCAGC	3 cut(s)	491, 677, 680
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	739
BtsCI	GGATG	4 cut(s)	220, 253, 305, 329
Cac8I	GCNNGC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	429, 680
CviAII	CATG	3 cut(s)	35, 95, 575
CviJI	RGCY	7 cut(s)	9, 259, 266, 482, 529, 617, 739
CviKI_1	RGCY	7 cut(s)	9, 259, 266, 482, 529, 617, 739
CviQI	GTAC	2 cut(s)	429, 680
DpnI	GATC	9 cut(s)	42, 51, 93, 188, 339, 360, 521, 702, 771
DpnII	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
Eam1104I	CTCTTC	2 cut(s)	316, 786
EarI	CTCTTC	2 cut(s)	316, 786
Eco147I	AGGCCT	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	156
EcoRII	CCWGG	3 cut(s)	470, 652, 691
FaeI	CATG	3 cut(s)	38, 98, 578
FaiI	YATR	9 cut(s)	36, 69, 96, 109, 217, 576, 580, 594, 746
FatI	CATG	3 cut(s)	34, 94, 574
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	480, 666, 669
FokI	GGATG	4 cut(s)	207, 260, 292, 316
Fsp4HI	GCNGC	3 cut(s)	480, 666, 669
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	3 cut(s)	480, 666, 669
HaeIII	GGCC	1 cut(s)	739
Hin1II	CATG	3 cut(s)	38, 98, 578
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	3 cut(s)	120, 323, 347
Hpy188I	TCNGA	5 cut(s)	337, 352, 401, 606, 790
Hpy188III	TCNNGA	6 cut(s)	14, 44, 231, 362, 523, 752
Hpy99I	CGWCG	1 cut(s)	610
HpyAV	CCTTC	4 cut(s)	234, 238, 291, 795
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	411, 452
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	38, 98, 578
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
Lsp1109I	GCAGC	3 cut(s)	491, 677, 680
LweI	GCATC	2 cut(s)	73, 238
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	3 cut(s)	146, 457, 626
MalI	GATC	9 cut(s)	42, 51, 93, 188, 339, 360, 521, 702, 771
MboI	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
MluCI	AATT	6 cut(s)	71, 156, 441, 486, 553, 780
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	488, 629
MnlI	CCTC	9 cut(s)	54, 137, 307, 310, 319, 343, 395, 469, 787
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	2 cut(s)	198, 489
MslI	CAYNNNNRTG	1 cut(s)	579
MspR9I	CCNGG	3 cut(s)	472, 654, 693
MvaI	CCWGG	3 cut(s)	472, 654, 693
MwoI	GCNNNNNNNGC	2 cut(s)	411, 452
NdeII	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
NlaIII	CATG	3 cut(s)	38, 98, 578
NmuCI	GTSAC	2 cut(s)	146, 626
NspI	RCATGY	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	123
PasI	CCCWGGG	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	739
PciI	ACATGT	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	120, 323
PkrI	GCNGC	3 cut(s)	481, 667, 670
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	425
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	3 cut(s)	470, 652, 691
PspGI	CCWGG	3 cut(s)	470, 652, 691
PsrI	GAACNNNNNNTAC	2 cut(s)	672, 704
RsaI	GTAC	2 cut(s)	430, 681
RsaNI	GTAC	2 cut(s)	429, 680
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	198, 489
SatI	GCNGC	3 cut(s)	480, 666, 669
Sau3AI	GATC	9 cut(s)	40, 49, 91, 186, 337, 358, 519, 700, 769
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	472, 654, 693
SetI	ASST	7 cut(s)	11, 108, 148, 268, 427, 484, 658
SfaNI	GCATC	2 cut(s)	73, 238
SfuI	TTCGAA	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	579
SpeI	ACTAGT	1 cut(s)	503
Sse9I	AATT	6 cut(s)	71, 156, 441, 486, 553, 780
SseBI	AGGCCT	1 cut(s)	739
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	3 cut(s)	470, 652, 691
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	52, 123, 762
TasI	AATT	6 cut(s)	71, 156, 441, 486, 553, 780
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	120, 323
Tru1I	TTAA	2 cut(s)	198, 489
Tru9I	TTAA	2 cut(s)	198, 489
TseFI	GTSAC	2 cut(s)	146, 626
TseI	GCWGC	3 cut(s)	479, 665, 668
Tsp45I	GTSAC	2 cut(s)	146, 626
TspDTI	ATGAA	4 cut(s)	17, 51, 732, 792
XapI	RAATTY	3 cut(s)	156, 553, 780
XceI	RCATGY	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.