Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002431

Physical Location & Seq

Genomic Coordinates Forward (+)

25490933 .. 25493459

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGGACGGAGCAGGAGGAGGAGAGGGCGAGCGGAATCGAACGAGTCCGTCGAGTAGTAGCAGCAGACTGAGAGTCAGACCCGACCCTTTCTTGTATGTCTGCCGCTGCTTCAGCGTCATCACTGCTCTCACTGCCATTCTCTGTATCGTCGTCAACGTCCTCTCCGCCATTCGATCCTTCACGGACGGATCTGATATTTTCGATGGTATATTTCGGTGTTATGCTGTTATCATTGCCATTTTTGTGGTTGTGGCCGAGACCGAGTGGGCATTCGTGATCAAGTTCTGGAAGGTATTGGAGTATTGGGTTGGTAGGGGTATGCTGCAGATCTTTGTTGCGGTCATGACAAGAGCTTTTCCTGACTATACTGGTGCTAATGATGCGCTTGTTCTTCTCCAGAACATAGCAAGCTATATGCTTCTTGCTTGTGGCGTGCTCTATGTTATTTCGGGAATTTTATGTATTGGCTTCCTCAAACGTGCTCGCCAGCAGAAAGAAATTTCAAGGGATCAAGCAGTTAAGGATCTTGAGGAATTGGAGCGGCGGAGGGAAGAACTTGAATCCTTGCTTCTTCAGGAAAGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

196

Amino Acids

22.02

Weight (kDa)

5.66

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740
fragaria_vesca	FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370
malus_domestica	MD05G1178600.v1.1 MD10G1166800.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1
pyrus_communis	pycom10g14380
rosa_chinensis	RchiOBHm_Chr6g0285161
rosa_laevigata	RLG00000012667
rosa_multiflora	Rmu_sc0006801.1_g000001 Rmu_sc0022341.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183590 Rroxscaffold_7G00183980
rosa_rugosa	Rorug06G0172400 Rorug06G0172500 Rorug06G0172500 Rorug06G0172600 Rorug06G0172700 Rorug06G0172800 Rorug06G0172900 Rorug06G0172900
rosa_samantha	Rh6AG282800 Rh6BG283600 Rh6CG285500 Rh6DG278600
rosa_wichuraiana	Rw6G024320 Rw6G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	34, 544
AciI	CCGC	6 cut(s)	34, 106, 168, 341, 544, 547
AclWI	GGATC	4 cut(s)	171, 199, 519, 534
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	456, 501
AcuI	CTGAAG	2 cut(s)	97, 560
AgsI	TTSAA	2 cut(s)	507, 563
AhdI	GACNNNNNGTC	1 cut(s)	74
AluBI	AGCT	2 cut(s)	356, 414
AluI	AGCT	2 cut(s)	356, 414
Alw21I	GWGCWC	2 cut(s)	441, 487
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	4 cut(s)	171, 199, 519, 534
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	3 cut(s)	63, 108, 325
ApoI	RAATTY	2 cut(s)	456, 501
AspLEI	GCGC	1 cut(s)	388
Bbv12I	GWGCWC	2 cut(s)	441, 487
BbvI	GCAGC	3 cut(s)	75, 95, 312
BccI	CCATC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	330
BisI	GCNGC	5 cut(s)	64, 106, 109, 326, 545
BlsI	GCNGC	5 cut(s)	65, 107, 110, 327, 546
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	2 cut(s)	33, 36
BseXI	GCAGC	3 cut(s)	75, 95, 312
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	441, 487
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	441, 487
Bsp143I	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
BspACI	CCGC	6 cut(s)	34, 106, 168, 341, 544, 547
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	330
BspPI	GGATC	4 cut(s)	171, 199, 519, 534
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	2 cut(s)	34, 544
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	376
BssMI	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
BstC8I	GCNNGC	5 cut(s)	32, 412, 437, 487, 491
BstDEI	CTNAG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	6 cut(s)	179, 194, 282, 333, 514, 529
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 134, 383
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	75, 95, 312
BstX2I	RGATCY	3 cut(s)	191, 330, 526
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	3 cut(s)	191, 330, 526
BsuRI	GGCC	1 cut(s)	257
BtsI	GCAGTG	2 cut(s)	123, 132
BtsIMutI	CAGTG	2 cut(s)	123, 132
Cac8I	GCNNGC	5 cut(s)	32, 412, 437, 487, 491
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	388
CseI	GACGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	5 cut(s)	257, 356, 414, 471, 587
CviKI_1	RGCY	5 cut(s)	257, 356, 414, 471, 587
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	6 cut(s)	178, 193, 281, 332, 513, 528
DpnII	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
DriI	GACNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	2 cut(s)	157, 562
Eco31I	GGTCTC	1 cut(s)	254
Eco57I	CTGAAG	2 cut(s)	97, 560
FaeI	CATG	1 cut(s)	349
FatI	CATG	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	5 cut(s)	64, 106, 109, 326, 545
Fsp4HI	GCNGC	5 cut(s)	64, 106, 109, 326, 545
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	5 cut(s)	64, 106, 109, 326, 545
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	257
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	37, 46, 75, 563
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	80, 196
Hpy188III	TCNNGA	8 cut(s)	277, 289, 346, 362, 400, 453, 530, 578
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	2 cut(s)	55, 155
HpyAV	CCTTC	2 cut(s)	190, 286
HpyCH4IV	ACGT	2 cut(s)	159, 481
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 134, 383
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	159, 481
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
LmnI	GCTCC	2 cut(s)	11, 541
LpnPI	CCDG	6 cut(s)	274, 357, 375, 413, 503, 563
Lsp1109I	GCAGC	3 cut(s)	75, 95, 312
LweI	GCATC	1 cut(s)	373
MaeII	ACGT	2 cut(s)	159, 481
MalI	GATC	6 cut(s)	178, 193, 281, 332, 513, 528
MbiI	CCGCTC	2 cut(s)	34, 544
MboI	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
MboII	GAAGA	3 cut(s)	386, 566, 566
MflI	RGATCY	3 cut(s)	191, 330, 526
MhlI	GDGCHC	2 cut(s)	441, 487
MluCI	AATT	3 cut(s)	456, 501, 536
MlyI	GAGTC	2 cut(s)	55, 84
MnlI	CCTC	7 cut(s)	11, 14, 19, 173, 485, 526, 543
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	114, 134, 383
NdeII	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
NlaIII	CATG	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	283
PagI	TCATGA	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 156
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	37, 563
PkrI	GCNGC	5 cut(s)	65, 107, 110, 327, 546
PleI	GAGTC	2 cut(s)	54, 83
PpsI	GAGTC	2 cut(s)	54, 83
PstI	CTGCAG	1 cut(s)	330
PsuI	RGATCY	3 cut(s)	191, 330, 526
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	5 cut(s)	64, 106, 109, 326, 545
Sau3AI	GATC	6 cut(s)	176, 191, 279, 330, 511, 526
SchI	GAGTC	2 cut(s)	55, 84
SduI	GDGCHC	2 cut(s)	441, 487
SetI	ASST	5 cut(s)	162, 297, 358, 416, 484
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	456, 501, 536
SsiI	CCGC	6 cut(s)	34, 106, 168, 341, 544, 547
TaiI	ACGT	2 cut(s)	162, 484
TaqI	TCGA	4 cut(s)	40, 53, 175, 204
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	456, 501, 536
TauI	GCSGC	2 cut(s)	108, 547
TfiI	GAWTC	2 cut(s)	37, 563
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	130, 139
TseI	GCWGC	3 cut(s)	63, 108, 325
TspGWI	ACGGA	4 cut(s)	24, 39, 200, 204
TspRI	CASTG	2 cut(s)	130, 139
XapI	RAATTY	2 cut(s)	456, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.