Rh6DG278600

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002431
Physical Location & Seq
Reverse (-)
47266486 .. 47267790
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG278600.1

Sequence Viewer

Length: 1305 bp
ATGTATACATTCAATACACATGCTTCCATTGTTTTATGTGATATGAAAAATAAGTTGTTTTCTGCAATCGCCCTCCCTATTGATTGGTACTTGTGTCCTTGTCCTAATAAGTTCCACAGTAAATTAAACAGTTTATGCAAGATGGCTGGTGTGAAACGAAGAATAGATACTGGTTCAGATATTCGTGCTCTTTACAAAGAACTGGATGCTGTTTCATGCCCTATCTGCATGGACCATCCACATAATGCAGTTCTCCTCCTTTGCAGCTCGCATGACAAGGGTTGCAGATCTTACATTTGTGATACGAGTTACAGGCATTCAAATTGCCTGGACCGTTTTAAAAAGTTGAGGGAAAATAATACAAACAGTCCAACTTTAGTCAGTTCTTTACCTACAAACCATCATGGCTCTCATAATAATTCTGATATGGCATCAGCAACAGATTTGAATGAAGCTAATGAAAGTCCTAACTTGATTGAAAGCAATGCTGTAATATCTGCCAATTCACCTGGGCAGCCACAGGAACGTGTTATTCAAGATCTAAATATGCCACTTCTGCCAGAAGAACTTTTGGGAGTGGCTGATTCCGAGTCAGTTCAGGAAAGGGTTGAGCATAGTGAGTTGGATGTGGAGAATTCCTCAGAGTCACACTTGAGCTTGAAATGTCCTTTGTGTCGAGGAGACATCCTTGGCTGGGAGGTTGTGGAAGATTGCAGAAAGTATCTTAATCTGAAGAAGCGAAGTTGTTCTCGTGAAGGATGCTCCTTTTCTGGTAACTACCAGGAGTTGCGTCGGCATGCTAGGAGAGTTCATCCCACTACTCGACCCTCAGACGTTGACCCATCTAGAGAGCGAGCCTGGAGACACCTTGAGCACCAGAGAGAATTTGGTGATGTAGTTAGTGCCATTCATTCAGCCATGCCAGGAGCTGTTGTGGTTGGGGATTATGTTATTGAAAATGGAGATAGGCTAGGGGGTGGAGGGGAAAGTGGTACTGGTGAAGCTAATGGCCCTTGGTGGACTACCATGTTTTTGTTTCAGATGATTGGTTCAGTTGATCGTGCTGGGGAACCGAGGGCGAGGGCAAGGGCTTGGACTAGACATCGGCGGTCAGCGGGAGCTTTATCCGAACGCCGGTTACTTTGGGGTGAGAATCTGTTGGGTCTTCAGGATGATGATGATGAAGATGATGAGGATGATGATGAGGAGGACAATATTCTCATGCTGAATGACAGAGATGTATCTCCAATTCCCAGAAGGCGCCGGCGTTTGACAAGATCTAGGTCAGATGAAGATCGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

434

Amino Acids

48.96

Weight (kDa)

5.74

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 70 - 301 9.5e-71 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1260
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 1108, 1115
AcsI RAATTY 2 cut(s) 634, 884
AcuI CTGAAG 2 cut(s) 752, 1151
AcyI GRCGYC 1 cut(s) 1261
AfaI GTAC 2 cut(s) 89, 994
AfiI CCNNNNNNNGG 2 cut(s) 694, 1134
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 7 cut(s) 13, 321, 448, 479, 536, 661, 956
AjnI CCWGG 5 cut(s) 327, 508, 780, 857, 922
AluBI AGCT 6 cut(s) 267, 455, 657, 929, 1004, 1121
AluI AGCT 6 cut(s) 267, 455, 657, 929, 1004, 1121
Alw21I GWGCWC 2 cut(s) 190, 876
Alw26I GTCTC 2 cut(s) 675, 856
AlwNI CAGNNNCTG 1 cut(s) 929
AoxI GGCC 1 cut(s) 1009
ApeKI GCWGC 2 cut(s) 264, 514
ApoI RAATTY 2 cut(s) 634, 884
Asp700I GAANNNNTTC 1 cut(s) 745
AspLEI GCGC 1 cut(s) 1263
AspS9I GGNCC 3 cut(s) 232, 331, 1010
AsuHPI GGTGA 4 cut(s) 498, 902, 1010, 1160
AvaII GGWCC 2 cut(s) 232, 331
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BanI GGYRCC 1 cut(s) 1260
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BauI CACGAG 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 1157
Bbv12I GWGCWC 2 cut(s) 190, 876
BbvI GCAGC 2 cut(s) 276, 526
BccI CCATC 4 cut(s) 136, 243, 408, 850
BciT130I CCWGG 5 cut(s) 329, 510, 782, 859, 924
BcoDI GTCTC 2 cut(s) 675, 856
BfaI CTAG 5 cut(s) 801, 846, 971, 1098, 1281
BfoI RGCGCY 1 cut(s) 1264
BglII AGATCT 3 cut(s) 287, 538, 1277
BisI GCNGC 2 cut(s) 265, 515
BlsI GCNGC 2 cut(s) 266, 516
Bme1390I CCNGG 5 cut(s) 329, 510, 782, 859, 924
Bme18I GGWCC 2 cut(s) 232, 331
BmgT120I GGNCC 3 cut(s) 232, 331, 1010
BmiI GGNNCC 2 cut(s) 1071, 1262
BmrFI CCNGG 5 cut(s) 329, 510, 782, 859, 924
BmsI GCATC 3 cut(s) 196, 440, 749
BpiI GAAGAC 1 cut(s) 1157
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 1 cut(s) 880
BpuEI CTTGAG 2 cut(s) 673, 890
BsaBI GATNNNNATC 1 cut(s) 1293
BsaHI GRCGYC 1 cut(s) 1261
BsaJI CCNNGG 4 cut(s) 509, 688, 1013, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 1134
Bse118I RCCGGY 2 cut(s) 1134, 1263
Bse1I ACTGG 3 cut(s) 175, 207, 1000
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 1293
BseBI CCWGG 5 cut(s) 329, 510, 782, 859, 924
BseDI CCNNGG 4 cut(s) 509, 688, 1013, 1073
BseGI GGATG 8 cut(s) 211, 235, 631, 684, 764, 811, 1177, 1201
BseJI GATNNNNATC 1 cut(s) 1293
BseLI CCNNNNNNNGG 2 cut(s) 694, 1134
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 654, 843
BseNI ACTGG 3 cut(s) 175, 207, 1000
BseRI GAGGAG 3 cut(s) 245, 693, 1220
BseXI GCAGC 2 cut(s) 276, 526
BseYI CCCAGC 2 cut(s) 693, 1064
BshFI GGCC 1 cut(s) 1011
BshNI GGYRCC 1 cut(s) 1260
BsiHKAI GWGCWC 2 cut(s) 190, 876
BsiSI CCGG 2 cut(s) 1135, 1264
BslI CCNNNNNNNGG 2 cut(s) 694, 1134
BsmAI GTCTC 2 cut(s) 675, 856
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 190, 876
Bsp143I GATC 5 cut(s) 287, 538, 1057, 1277, 1294
BspACI CCGC 2 cut(s) 1108, 1115
BspANI GGCC 1 cut(s) 1011
BspCNI CTCAG 2 cut(s) 653, 842
BspLI GGNNCC 2 cut(s) 1071, 1262
BspT107I GGYRCC 1 cut(s) 1260
BsrDI GCAATG 1 cut(s) 490
BsrFI RCCGGY 2 cut(s) 1134, 1263
BsrI ACTGG 3 cut(s) 175, 207, 1000
BssAI RCCGGY 2 cut(s) 1134, 1263
BssECI CCNNGG 4 cut(s) 509, 688, 1013, 1073
BssMI GATC 5 cut(s) 287, 538, 1057, 1277, 1294
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 1261
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 2 cut(s) 688, 1013
Bst1107I GTATAC 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 5 cut(s) 329, 510, 782, 859, 924
Bst4CI ACNGT 4 cut(s) 119, 131, 335, 368
BstACI GRCGYC 1 cut(s) 1261
BstC8I GCNNGC 4 cut(s) 269, 798, 855, 1265
BstDEI CTNAG 2 cut(s) 640, 829
BstF5I GGATG 8 cut(s) 211, 235, 631, 684, 764, 811, 1177, 1201
BstH2I RGCGCY 1 cut(s) 1264
BstHHI GCGC 1 cut(s) 1263
BstKTI GATC 5 cut(s) 290, 541, 1060, 1280, 1297
BstMAI GTCTC 2 cut(s) 675, 856
BstMBI GATC 5 cut(s) 287, 538, 1057, 1277, 1294
BstMWI GCNNNNNNNGC 2 cut(s) 225, 556
BstNI CCWGG 5 cut(s) 329, 510, 782, 859, 924
BstNSI RCATGY 2 cut(s) 23, 800
BstSCI CCNGG 5 cut(s) 327, 508, 780, 857, 922
BstV1I GCAGC 2 cut(s) 276, 526
BstV2I GAAGAC 1 cut(s) 1157
BstX2I RGATCY 3 cut(s) 287, 538, 1277
BstYI RGATCY 3 cut(s) 287, 538, 1277
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 1011
BtsCI GGATG 8 cut(s) 211, 235, 631, 684, 764, 811, 1177, 1201
Cac8I GCNNGC 4 cut(s) 269, 798, 855, 1265
CaiI CAGNNNCTG 1 cut(s) 929
CfoI GCGC 1 cut(s) 1263
Cfr10I RCCGGY 2 cut(s) 1134, 1263
Cfr13I GGNCC 3 cut(s) 232, 331, 1010
CseI GACGC 1 cut(s) 779
Csp6I GTAC 2 cut(s) 88, 993
CviQI GTAC 2 cut(s) 88, 993
DdeI CTNAG 2 cut(s) 640, 829
DinI GGCGCC 1 cut(s) 1262
DpnI GATC 5 cut(s) 289, 540, 1059, 1279, 1296
DpnII GATC 5 cut(s) 287, 538, 1057, 1277, 1294
DraI TTTAAA 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 688, 1013
Eco47I GGWCC 2 cut(s) 232, 331
Eco57I CTGAAG 2 cut(s) 752, 1151
EcoRI GAATTC 1 cut(s) 634
EcoRII CCWGG 5 cut(s) 327, 508, 780, 857, 922
EcoT14I CCWWGG 2 cut(s) 688, 1013
EgeI GGCGCC 1 cut(s) 1262
EheI GGCGCC 1 cut(s) 1262
ErhI CCWWGG 2 cut(s) 688, 1013
FauI CCCGC 1 cut(s) 1108
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 265, 515
FokI GGATG 8 cut(s) 218, 222, 638, 671, 771, 798, 1184, 1208
Fsp4HI GCNGC 2 cut(s) 265, 515
FspBI CTAG 5 cut(s) 801, 846, 971, 1098, 1281
GlaI GCGC 1 cut(s) 1262
GluI GCNGC 2 cut(s) 265, 515
GsaI CCCAGC 2 cut(s) 697, 1068
GsuI CTGGAG 1 cut(s) 880
HaeII RGCGCY 1 cut(s) 1264
HaeIII GGCC 1 cut(s) 1011
HapII CCGG 2 cut(s) 1135, 1264
HgaI GACGC 1 cut(s) 779
HhaI GCGC 1 cut(s) 1263
Hin1I GRCGYC 1 cut(s) 1261
Hin6I GCGC 1 cut(s) 1261
HinP1I GCGC 1 cut(s) 1261
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HinfI GANTC 4 cut(s) 584, 590, 644, 1153
HpaII CCGG 2 cut(s) 1135, 1264
HphI GGTGA 4 cut(s) 498, 902, 1010, 1160
Hpy166II GTNNAC 3 cut(s) 6, 838, 1020
Hpy188I TCNGA 9 cut(s) 178, 424, 589, 643, 732, 832, 1041, 1129, 1288
Hpy188III TCNNGA 5 cut(s) 536, 599, 752, 846, 1169
Hpy8I GTNNAC 3 cut(s) 6, 838, 1020
Hpy99I CGWCG 1 cut(s) 795
HpyAV CCTTC 2 cut(s) 749, 1251
HpyCH4III ACNGT 4 cut(s) 119, 131, 335, 368
HpyCH4IV ACGT 2 cut(s) 526, 834
HpyCH4V TGCA 7 cut(s) 65, 138, 228, 248, 264, 285, 714
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 556
HpyF3I CTNAG 2 cut(s) 640, 829
HpySE526I ACGT 2 cut(s) 526, 834
Hsp92I GRCGYC 1 cut(s) 1261
HspAI GCGC 1 cut(s) 1261
KasI GGCGCC 1 cut(s) 1260
KroI GCCGGC 1 cut(s) 1263
KroNI GCCGGC 1 cut(s) 1265
Kzo9I GATC 5 cut(s) 287, 538, 1057, 1277, 1294
LmnI GCTCC 3 cut(s) 767, 926, 1118
Lsp1109I GCAGC 2 cut(s) 276, 526
LweI GCATC 3 cut(s) 196, 440, 749
MaeI CTAG 5 cut(s) 801, 846, 971, 1098, 1281
MaeII ACGT 2 cut(s) 526, 834
MaeIII GTNAC 4 cut(s) 308, 645, 773, 1137
MalI GATC 5 cut(s) 289, 540, 1059, 1279, 1296
MboI GATC 5 cut(s) 287, 538, 1057, 1277, 1294
MboII GAAGA 7 cut(s) 171, 575, 719, 745, 1157, 1196, 1304
MflI RGATCY 3 cut(s) 287, 538, 1277
MhlI GDGCHC 2 cut(s) 190, 876
MluCI AATT 7 cut(s) 122, 322, 418, 502, 634, 884, 1248
Mly113I GGCGCC 1 cut(s) 1261
MlyI GAGTC 2 cut(s) 599, 653
MmeI TCCRAC 2 cut(s) 395, 603
MreI CGCCGGCG 1 cut(s) 1263
MroNI GCCGGC 1 cut(s) 1263
MroXI GAANNNNTTC 1 cut(s) 745
MseI TTAA 3 cut(s) 125, 339, 726
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 2 cut(s) 1135, 1264
MspR9I CCNGG 5 cut(s) 329, 510, 782, 859, 924
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 5 cut(s) 329, 510, 782, 859, 924
MwoI GCNNNNNNNGC 2 cut(s) 225, 556
NaeI GCCGGC 1 cut(s) 1265
NarI GGCGCC 1 cut(s) 1261
NdeII GATC 5 cut(s) 287, 538, 1057, 1277, 1294
NgoMIV GCCGGC 1 cut(s) 1263
NlaIV GGNNCC 2 cut(s) 1071, 1262
NmuCI GTSAC 1 cut(s) 645
NspI RCATGY 2 cut(s) 23, 800
PaeI GCATGC 1 cut(s) 800
PctI GAATGC 1 cut(s) 316
PdiI GCCGGC 1 cut(s) 1265
PdmI GAANNNNTTC 1 cut(s) 745
PfeI GAWTC 2 cut(s) 584, 1153
PkrI GCNGC 2 cut(s) 266, 516
PleI GAGTC 2 cut(s) 598, 652
PluTI GGCGCC 1 cut(s) 1264
PpsI GAGTC 2 cut(s) 598, 652
Psp6I CCWGG 5 cut(s) 327, 508, 780, 857, 922
PspFI CCCAGC 2 cut(s) 693, 1064
PspGI CCWGG 5 cut(s) 327, 508, 780, 857, 922
PspN4I GGNNCC 2 cut(s) 1071, 1262
PspPI GGNCC 3 cut(s) 232, 331, 1010
PsrI GAACNNNNNNTAC 2 cut(s) 1122, 1154
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 3 cut(s) 287, 538, 1277
RsaI GTAC 2 cut(s) 89, 994
RsaNI GTAC 2 cut(s) 88, 993
SaqAI TTAA 3 cut(s) 125, 339, 726
SatI GCNGC 2 cut(s) 265, 515
Sau3AI GATC 5 cut(s) 287, 538, 1057, 1277, 1294
Sau96I GGNCC 3 cut(s) 232, 331, 1010
SchI GAGTC 2 cut(s) 599, 653
ScrFI CCNGG 5 cut(s) 329, 510, 782, 859, 924
SduI GDGCHC 2 cut(s) 190, 876
SfaNI GCATC 3 cut(s) 196, 440, 749
SfoI GGCGCC 1 cut(s) 1262
SgrAI CRCCGGYG 1 cut(s) 1263
SinI GGWCC 2 cut(s) 232, 331
SmlI CTYRAG 2 cut(s) 652, 869
SmoI CTYRAG 2 cut(s) 652, 869
SphI GCATGC 1 cut(s) 800
Sse9I AATT 7 cut(s) 122, 322, 418, 502, 634, 884, 1248
SsiI CCGC 2 cut(s) 1108, 1115
SspDI GGCGCC 1 cut(s) 1260
SspI AATATT 1 cut(s) 1216
SspMI CTAG 5 cut(s) 801, 846, 971, 1098, 1281
StyD4I CCNGG 5 cut(s) 327, 508, 780, 857, 922
StyI CCWWGG 2 cut(s) 688, 1013
TaaI ACNGT 4 cut(s) 119, 131, 335, 368
TaiI ACGT 2 cut(s) 529, 837
TaqI TCGA 3 cut(s) 676, 823, 1297
TasI AATT 7 cut(s) 122, 322, 418, 502, 634, 884, 1248
TfiI GAWTC 2 cut(s) 584, 1153
Tru1I TTAA 3 cut(s) 125, 339, 726
Tru9I TTAA 3 cut(s) 125, 339, 726
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 2 cut(s) 264, 514
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 8 cut(s) 59, 204, 465, 474, 800, 899, 1197, 1305
VpaK11BI GGWCC 2 cut(s) 232, 331
XapI RAATTY 2 cut(s) 634, 884
XbaI TCTAGA 1 cut(s) 845
XceI RCATGY 2 cut(s) 23, 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 745
XspI CTAG 5 cut(s) 801, 846, 971, 1098, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.