Rroxscaffold_7G00183980

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002431
Physical Location & Seq
Forward (+)
23151827 .. 23154517
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183980.1

Sequence Viewer

Length: 909 bp
ATGGCTGGTGTGAAACGAAGAATAGATACTGGTTCAGATATTCGTGCTCTTTACAAAGAACTGGATGCTGTTTCATGCCCTATCTGCATGGACCATCCACATAATGCAGTTCTCCTCCTTTGCAGCTCGCATGACAAGGGTTGCAGATCTTACATCTGTGATACGAGTTACAGGCATTCAAATTGCCTGGACCGTTTTAAAAAGTTGAGGGAAAATAATACAAACAGTCCAACTTTAGTCAGTTCTTTACCTACAAACCATCATGGCTCTCATAATACTTCTGATATGGCATCGGGAACAGATTTGAATGAAGCTAATGAAAGTCCTAACTTAATTGAAATTGAAAGCAATGCTGTAATATCTGCCCATTCACCTGGACAGCCACAGGAACGTGTTATTCAAGATCTAAATATGCCACTTCTGCCAGAAGAACTTTTGGGAGTCGCTGATTCCGAGTCAGTTCAGGAAAGGGTTGAGCATAGTGAGTTGGATGTGGAAAATTCATCAGAGTCAAATTTGAGCTTGAAATGTCCTTTGTGCCGGGGAGCCATCCTTGGTTGGGAGGTTGTGGAAGATTGCAGAAAGTATCTTAATCTGAAGAAGCGAAGTTGTTCTCGTGAAGGATGCTCCTTTTCTGGTAACTACCAGGAGTTGCGTCGGCATGCTAGGAGAGTTCATCCCGCTACTCGACCGTCAGACATTGACCCATCTAGAGAGCGAGCCTGGAGACACCTTGAGCACCAGAGAGAATTTGGTGATGTAGTTAGTGCTATTCATTCAGCCATGCCAGGAGCTGTTGTGGTTGGGGATTATGTTATTGAAAATGGAGATAGGCTAGGGGTGGAGGGGAAATTGGTACTGGTGAAGCTAATGGCCCTTGGTGGACTACCATGTTTTTGTTTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

302

Amino Acids

33.58

Weight (kDa)

6.06

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 23 - 256 1.2e-70 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 681
AcsI RAATTY 3 cut(s) 499, 514, 749
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 858
AfiI CCNNNNNNNGG 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 7 cut(s) 180, 307, 338, 344, 401, 526, 821
AjnI CCWGG 5 cut(s) 186, 373, 645, 722, 787
AluBI AGCT 5 cut(s) 126, 314, 522, 794, 868
AluI AGCT 5 cut(s) 126, 314, 522, 794, 868
Alw21I GWGCWC 2 cut(s) 49, 741
Alw26I GTCTC 1 cut(s) 721
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 1 cut(s) 873
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 3 cut(s) 499, 514, 749
Asp700I GAANNNNTTC 1 cut(s) 610
AspS9I GGNCC 3 cut(s) 91, 190, 874
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 3 cut(s) 363, 767, 874
AvaII GGWCC 2 cut(s) 91, 190
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
BauI CACGAG 1 cut(s) 615
Bbv12I GWGCWC 2 cut(s) 49, 741
BbvI GCAGC 1 cut(s) 135
BccI CCATC 4 cut(s) 102, 267, 557, 715
BciT130I CCWGG 5 cut(s) 188, 375, 647, 724, 789
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 3 cut(s) 666, 711, 836
BglII AGATCT 2 cut(s) 146, 403
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 6 cut(s) 188, 375, 542, 647, 724, 789
Bme18I GGWCC 2 cut(s) 91, 190
BmgT120I GGNCC 3 cut(s) 91, 190, 874
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 6 cut(s) 188, 375, 542, 647, 724, 789
BmsI GCATC 3 cut(s) 55, 299, 614
BpmI CTGGAG 1 cut(s) 745
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 542
BsaJI CCNNGG 3 cut(s) 541, 553, 877
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 3 cut(s) 34, 66, 864
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 5 cut(s) 188, 375, 647, 724, 789
BseDI CCNNGG 3 cut(s) 541, 553, 877
BseGI GGATG 6 cut(s) 70, 94, 496, 549, 629, 676
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 1 cut(s) 355
BseNI ACTGG 3 cut(s) 34, 66, 864
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 692
BshFI GGCC 1 cut(s) 875
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 2 cut(s) 49, 741
BsiSI CCGG 1 cut(s) 541
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 875
Bsp1286I GDGCHC 2 cut(s) 49, 741
Bsp143I GATC 2 cut(s) 146, 403
BspACI CCGC 1 cut(s) 681
BspANI GGCC 1 cut(s) 875
BspLI GGNNCC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 3 cut(s) 34, 66, 864
BssECI CCNNGG 3 cut(s) 541, 553, 877
BssMI GATC 2 cut(s) 146, 403
BssSI CACGAG 1 cut(s) 615
BssT1I CCWWGG 2 cut(s) 553, 877
Bst2BI CACGAG 1 cut(s) 615
Bst2UI CCWGG 5 cut(s) 188, 375, 647, 724, 789
Bst4CI ACNGT 3 cut(s) 194, 227, 693
BstC8I GCNNGC 3 cut(s) 128, 663, 720
BstF5I GGATG 6 cut(s) 70, 94, 496, 549, 629, 676
BstKTI GATC 2 cut(s) 149, 406
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 2 cut(s) 146, 403
BstMCI CGRYCG 1 cut(s) 692
BstMWI GCNNNNNNNGC 2 cut(s) 84, 421
BstNI CCWGG 5 cut(s) 188, 375, 647, 724, 789
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 6 cut(s) 186, 373, 540, 645, 722, 787
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 146, 403
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 2 cut(s) 146, 403
BsuRI GGCC 1 cut(s) 875
BtsCI GGATG 6 cut(s) 70, 94, 496, 549, 629, 676
Cac8I GCNNGC 3 cut(s) 128, 663, 720
CaiI CAGNNNCTG 1 cut(s) 794
Cfr13I GGNCC 3 cut(s) 91, 190, 874
CseI GACGC 1 cut(s) 644
Csp6I GTAC 1 cut(s) 857
CviAII CATG 7 cut(s) 75, 88, 131, 263, 662, 784, 891
CviQI GTAC 1 cut(s) 857
DpnI GATC 2 cut(s) 148, 405
DpnII GATC 2 cut(s) 146, 403
DraI TTTAAA 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 553, 877
Eco47I GGWCC 2 cut(s) 91, 190
Eco57I CTGAAG 1 cut(s) 617
EcoRII CCWGG 5 cut(s) 186, 373, 645, 722, 787
EcoT14I CCWWGG 2 cut(s) 553, 877
ErhI CCWWGG 2 cut(s) 553, 877
FaeI CATG 7 cut(s) 78, 91, 134, 266, 665, 787, 894
FatI CATG 7 cut(s) 74, 87, 130, 262, 661, 783, 890
FauI CCCGC 1 cut(s) 688
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 6 cut(s) 77, 81, 503, 536, 636, 663
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 3 cut(s) 666, 711, 836
GluI GCNGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 745
HaeIII GGCC 1 cut(s) 875
HapII CCGG 1 cut(s) 541
HgaI GACGC 1 cut(s) 644
Hin1II CATG 7 cut(s) 78, 91, 134, 266, 665, 787, 894
HinfI GANTC 4 cut(s) 441, 449, 455, 509
HpaII CCGG 1 cut(s) 541
HphI GGTGA 3 cut(s) 363, 767, 874
Hpy166II GTNNAC 1 cut(s) 884
Hpy188I TCNGA 7 cut(s) 37, 283, 454, 508, 597, 697, 905
Hpy188III TCNNGA 5 cut(s) 294, 401, 464, 617, 711
Hpy8I GTNNAC 1 cut(s) 884
Hpy99I CGWCG 1 cut(s) 660
HpyAV CCTTC 1 cut(s) 614
HpyCH4III ACNGT 3 cut(s) 194, 227, 693
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 5 cut(s) 87, 107, 123, 144, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 421
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 7 cut(s) 78, 91, 134, 266, 665, 787, 894
Kzo9I GATC 2 cut(s) 146, 403
LmnI GCTCC 3 cut(s) 545, 632, 791
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 3 cut(s) 55, 299, 614
MaeI CTAG 3 cut(s) 666, 711, 836
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 2 cut(s) 167, 638
MalI GATC 2 cut(s) 148, 405
MboI GATC 2 cut(s) 146, 403
MboII GAAGA 4 cut(s) 30, 440, 584, 610
MflI RGATCY 2 cut(s) 146, 403
MhlI GDGCHC 2 cut(s) 49, 741
MluCI AATT 7 cut(s) 181, 333, 339, 499, 514, 749, 851
MlyI GAGTC 3 cut(s) 450, 464, 518
MmeI TCCRAC 2 cut(s) 254, 468
MnlI CCTC 4 cut(s) 125, 201, 556, 838
MroXI GAANNNNTTC 1 cut(s) 610
MseI TTAA 3 cut(s) 198, 332, 591
MspI CCGG 1 cut(s) 541
MspR9I CCNGG 6 cut(s) 188, 375, 542, 647, 724, 789
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 5 cut(s) 188, 375, 647, 724, 789
MwoI GCNNNNNNNGC 2 cut(s) 84, 421
NciI CCSGG 1 cut(s) 542
NdeII GATC 2 cut(s) 146, 403
NlaIII CATG 7 cut(s) 78, 91, 134, 266, 665, 787, 894
NlaIV GGNNCC 1 cut(s) 547
NspI RCATGY 1 cut(s) 665
PaeI GCATGC 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 3 cut(s) 449, 463, 517
PpsI GAGTC 3 cut(s) 449, 463, 517
Psp6I CCWGG 5 cut(s) 186, 373, 645, 722, 787
PspGI CCWGG 5 cut(s) 186, 373, 645, 722, 787
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 3 cut(s) 91, 190, 874
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 2 cut(s) 146, 403
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
SaqAI TTAA 3 cut(s) 198, 332, 591
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 2 cut(s) 146, 403
Sau96I GGNCC 3 cut(s) 91, 190, 874
SchI GAGTC 3 cut(s) 450, 464, 518
ScrFI CCNGG 6 cut(s) 188, 375, 542, 647, 724, 789
SduI GDGCHC 2 cut(s) 49, 741
SfaNI GCATC 3 cut(s) 55, 299, 614
SinI GGWCC 2 cut(s) 91, 190
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SphI GCATGC 1 cut(s) 665
Sse9I AATT 7 cut(s) 181, 333, 339, 499, 514, 749, 851
SsiI CCGC 1 cut(s) 681
SspMI CTAG 3 cut(s) 666, 711, 836
StyD4I CCNGG 6 cut(s) 186, 373, 540, 645, 722, 787
StyI CCWWGG 2 cut(s) 553, 877
TaaI ACNGT 3 cut(s) 194, 227, 693
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 688
TasI AATT 7 cut(s) 181, 333, 339, 499, 514, 749, 851
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 3 cut(s) 198, 332, 591
Tru9I TTAA 3 cut(s) 198, 332, 591
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 6 cut(s) 63, 324, 333, 492, 665, 764
VpaK11BI GGWCC 2 cut(s) 91, 190
XapI RAATTY 3 cut(s) 499, 514, 749
XbaI TCTAGA 1 cut(s) 710
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 610
XspI CTAG 3 cut(s) 666, 711, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.