RLG00000012667

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002431
Physical Location & Seq
Forward (+)
21076331 .. 21077491
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012667

Sequence Viewer

Length: 1161 bp
ATGGCTGGTGTGAAACGAAGAATAGATACTGGTTCAGATATTCGTGCTCTTTACAAAGAACTGGATGCTGTTTCATGCCCTATCTGCATGGACCATCCACATAATGCAGTTCTCCTCCTTTGCAGCTCGCATGACAAGGGTTGCAGATCTTACATTTGTGATACTAGTTACAGGCATTCAAATTGCCTGGACCGTTTTAAAAAGTTGAGGGAAAATAATACAAACAGTCCAACTTTAGTCAGTTCTTTACCTACAAACCATCATGGCTCTCATAATACTTCTGATATGGCATTGGGAACAGATTTGAATGAAGCTAATGAAAGTCCTAACTTGATTGAAAGCAATGCTGTAATATCTGCCAATTCACCTGGACAGCCACAGGAACGTGTTATTCAAGATCTAAATATGCCACTTCTGCCGGAAGAACTTTTGGGAGTGGCTGATTCCGAGTCTGTTCAGGAAAGGGTCGAGCATAGTGAGTTGGATGTGGAGAATTCATCAGAGTCAAACTTGAGCTTGAAATGTCCTTTGTGCCGAGGAGCCATCCTTGGCTGGGAGGTTGTGGAAGATTGCAGAAAGTATCTTAATCTGAAGAAGCGAAGTTGTTCTCGTGAAGGATGCTCCTTTTCTGGTAACTACCAGGAGTTGCGTCGGCATGCTAGGAGAGTTCATCCTGCTACTCGACCCTCAGACATTGACCCATCTAGAGAGCGAGCCTGGAGACACCTTGAGCACCAGCGAGAATTTGGTGATGTAGTTAGTGCTATTCATTCAGCCATGCCAGGAGCTGTTGTGGTTGGGGATTATGTTATTGAAAATGGAGATAGGCTAGGGGGTGGAGGGGAAAGTGGTACTGGTGAAGCTAATGGCCCTTGGTGGACTACCATGTTTTTGTTTCAGATGATTGGTTCAGTTGATCGTGCTGGGGAACCAAGGGCAAGGGCAAGGGCTTGGACTAGACATCGGCGGTCAGCGGGAGCTTTGTCCGAACGCCGGTTACTTTGGGGTGAGAATCTGTTGGGTCTTCAGGATGATGATGAAGATGATGAGGATGATGAGGAAGAGGACAATATTCTCATGCTGAATGACAGAGATGTATCTCCAATTCCCAGAAGGCGCCGGCGTTTGACAAGATCTAGGTCAGATGAAGATCGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

387

Amino Acids

43.37

Weight (kDa)

5.52

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 23 - 254 2.3e-70 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1116
AciI CCGC 2 cut(s) 967, 974
AcsI RAATTY 2 cut(s) 493, 743
AcuI CTGAAG 2 cut(s) 611, 1010
AcyI GRCGYC 1 cut(s) 1117
AfaI GTAC 1 cut(s) 853
AfiI CCNNNNNNNGG 2 cut(s) 553, 993
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 6 cut(s) 180, 307, 338, 395, 520, 815
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 5 cut(s) 186, 367, 639, 716, 781
AluBI AGCT 6 cut(s) 126, 314, 516, 788, 863, 980
AluI AGCT 6 cut(s) 126, 314, 516, 788, 863, 980
Alw21I GWGCWC 2 cut(s) 49, 735
Alw26I GTCTC 1 cut(s) 715
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 1 cut(s) 868
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 493, 743
Asp700I GAANNNNTTC 1 cut(s) 604
AspLEI GCGC 1 cut(s) 1119
AspS9I GGNCC 3 cut(s) 91, 190, 869
AsuHPI GGTGA 4 cut(s) 357, 761, 869, 1019
AvaII GGWCC 2 cut(s) 91, 190
BanI GGYRCC 1 cut(s) 1116
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
BauI CACGAG 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 1016
Bbv12I GWGCWC 2 cut(s) 49, 735
BbvI GCAGC 1 cut(s) 135
BccI CCATC 4 cut(s) 102, 267, 551, 709
BciT130I CCWGG 5 cut(s) 188, 369, 641, 718, 783
BcoDI GTCTC 1 cut(s) 715
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 6 cut(s) 165, 660, 705, 830, 957, 1137
BfoI RGCGCY 1 cut(s) 1120
BglII AGATCT 3 cut(s) 146, 397, 1133
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 5 cut(s) 188, 369, 641, 718, 783
Bme18I GGWCC 2 cut(s) 91, 190
BmgT120I GGNCC 3 cut(s) 91, 190, 869
BmiI GGNNCC 3 cut(s) 541, 930, 1118
BmrFI CCNGG 5 cut(s) 188, 369, 641, 718, 783
BmsI GCATC 2 cut(s) 55, 608
BpiI GAAGAC 1 cut(s) 1016
BpmI CTGGAG 1 cut(s) 739
BpuEI CTTGAG 2 cut(s) 532, 749
BsaBI GATNNNNATC 1 cut(s) 1149
BsaHI GRCGYC 1 cut(s) 1117
BsaJI CCNNGG 4 cut(s) 535, 547, 872, 932
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 553, 993
Bse118I RCCGGY 2 cut(s) 993, 1119
Bse1I ACTGG 3 cut(s) 34, 66, 859
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 1149
BseBI CCWGG 5 cut(s) 188, 369, 641, 718, 783
BseDI CCNNGG 4 cut(s) 535, 547, 872, 932
BseGI GGATG 8 cut(s) 70, 94, 490, 543, 623, 670, 1036, 1057
BseJI GATNNNNATC 1 cut(s) 1149
BseLI CCNNNNNNNGG 2 cut(s) 553, 993
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 3 cut(s) 34, 66, 859
BseRI GAGGAG 2 cut(s) 104, 552
BseXI GCAGC 1 cut(s) 135
BseYI CCCAGC 2 cut(s) 552, 923
BshFI GGCC 1 cut(s) 870
BshNI GGYRCC 1 cut(s) 1116
BsiHKAI GWGCWC 2 cut(s) 49, 735
BsiSI CCGG 3 cut(s) 419, 994, 1120
BslI CCNNNNNNNGG 2 cut(s) 553, 993
BsmAI GTCTC 1 cut(s) 715
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 870
Bsp1286I GDGCHC 2 cut(s) 49, 735
Bsp143I GATC 5 cut(s) 146, 397, 916, 1133, 1150
BspACI CCGC 2 cut(s) 967, 974
BspANI GGCC 1 cut(s) 870
BspCNI CTCAG 1 cut(s) 701
BspLI GGNNCC 3 cut(s) 541, 930, 1118
BspT107I GGYRCC 1 cut(s) 1116
BsrDI GCAATG 1 cut(s) 349
BsrFI RCCGGY 2 cut(s) 993, 1119
BsrI ACTGG 3 cut(s) 34, 66, 859
BssAI RCCGGY 2 cut(s) 993, 1119
BssECI CCNNGG 4 cut(s) 535, 547, 872, 932
BssMI GATC 5 cut(s) 146, 397, 916, 1133, 1150
BssNI GRCGYC 1 cut(s) 1117
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 3 cut(s) 547, 872, 932
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 5 cut(s) 188, 369, 641, 718, 783
Bst4CI ACNGT 2 cut(s) 194, 227
Bst6I CTCTTC 1 cut(s) 1056
BstACI GRCGYC 1 cut(s) 1117
BstC8I GCNNGC 4 cut(s) 128, 657, 714, 1121
BstDEI CTNAG 1 cut(s) 688
BstF5I GGATG 8 cut(s) 70, 94, 490, 543, 623, 670, 1036, 1057
BstH2I RGCGCY 1 cut(s) 1120
BstHHI GCGC 1 cut(s) 1119
BstKTI GATC 5 cut(s) 149, 400, 919, 1136, 1153
BstMAI GTCTC 1 cut(s) 715
BstMBI GATC 5 cut(s) 146, 397, 916, 1133, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 84, 415
BstNI CCWGG 5 cut(s) 188, 369, 641, 718, 783
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 5 cut(s) 186, 367, 639, 716, 781
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 1016
BstX2I RGATCY 3 cut(s) 146, 397, 1133
BstYI RGATCY 3 cut(s) 146, 397, 1133
BsuRI GGCC 1 cut(s) 870
BtsCI GGATG 8 cut(s) 70, 94, 490, 543, 623, 670, 1036, 1057
Cac8I GCNNGC 4 cut(s) 128, 657, 714, 1121
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 1 cut(s) 1119
Cfr10I RCCGGY 2 cut(s) 993, 1119
Cfr13I GGNCC 3 cut(s) 91, 190, 869
CseI GACGC 1 cut(s) 638
Csp6I GTAC 1 cut(s) 852
CviAII CATG 9 cut(s) 75, 88, 131, 263, 656, 778, 886, 1078, 1158
CviQI GTAC 1 cut(s) 852
DdeI CTNAG 1 cut(s) 688
DinI GGCGCC 1 cut(s) 1118
DpnI GATC 5 cut(s) 148, 399, 918, 1135, 1152
DpnII GATC 5 cut(s) 146, 397, 916, 1133, 1150
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 1056
EarI CTCTTC 1 cut(s) 1056
Eco130I CCWWGG 3 cut(s) 547, 872, 932
Eco47I GGWCC 2 cut(s) 91, 190
Eco57I CTGAAG 2 cut(s) 611, 1010
EcoRI GAATTC 1 cut(s) 493
EcoRII CCWGG 5 cut(s) 186, 367, 639, 716, 781
EcoT14I CCWWGG 3 cut(s) 547, 872, 932
EgeI GGCGCC 1 cut(s) 1118
EheI GGCGCC 1 cut(s) 1118
ErhI CCWWGG 3 cut(s) 547, 872, 932
FaeI CATG 9 cut(s) 78, 91, 134, 266, 659, 781, 889, 1081, 1161
FatI CATG 9 cut(s) 74, 87, 130, 262, 655, 777, 885, 1077, 1157
FauI CCCGC 1 cut(s) 967
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 8 cut(s) 77, 81, 497, 530, 630, 657, 1043, 1064
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 6 cut(s) 165, 660, 705, 830, 957, 1137
GlaI GCGC 1 cut(s) 1118
GluI GCNGC 1 cut(s) 124
GsaI CCCAGC 2 cut(s) 556, 927
GsuI CTGGAG 1 cut(s) 739
HaeII RGCGCY 1 cut(s) 1120
HaeIII GGCC 1 cut(s) 870
HapII CCGG 3 cut(s) 419, 994, 1120
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 1119
Hin1I GRCGYC 1 cut(s) 1117
Hin1II CATG 9 cut(s) 78, 91, 134, 266, 659, 781, 889, 1081, 1161
Hin6I GCGC 1 cut(s) 1117
HinP1I GCGC 1 cut(s) 1117
HinfI GANTC 4 cut(s) 443, 449, 503, 1012
HpaII CCGG 3 cut(s) 419, 994, 1120
HphI GGTGA 4 cut(s) 357, 761, 869, 1019
Hpy166II GTNNAC 1 cut(s) 879
Hpy188I TCNGA 9 cut(s) 37, 283, 448, 502, 591, 691, 900, 988, 1144
Hpy188III TCNNGA 5 cut(s) 395, 458, 611, 705, 1028
Hpy8I GTNNAC 1 cut(s) 879
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 2 cut(s) 608, 1107
HpyCH4III ACNGT 2 cut(s) 194, 227
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 5 cut(s) 87, 107, 123, 144, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 415
HpyF3I CTNAG 1 cut(s) 688
HpySE526I ACGT 1 cut(s) 385
Hsp92I GRCGYC 1 cut(s) 1117
Hsp92II CATG 9 cut(s) 78, 91, 134, 266, 659, 781, 889, 1081, 1161
HspAI GCGC 1 cut(s) 1117
KasI GGCGCC 1 cut(s) 1116
KroI GCCGGC 1 cut(s) 1119
KroNI GCCGGC 1 cut(s) 1121
Kzo9I GATC 5 cut(s) 146, 397, 916, 1133, 1150
LmnI GCTCC 4 cut(s) 539, 626, 785, 977
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 2 cut(s) 55, 608
MaeI CTAG 6 cut(s) 165, 660, 705, 830, 957, 1137
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 3 cut(s) 167, 632, 996
MalI GATC 5 cut(s) 148, 399, 918, 1135, 1152
MboI GATC 5 cut(s) 146, 397, 916, 1133, 1150
MboII GAAGA 8 cut(s) 30, 434, 578, 604, 1016, 1052, 1073, 1160
MflI RGATCY 3 cut(s) 146, 397, 1133
MhlI GDGCHC 2 cut(s) 49, 735
MluCI AATT 5 cut(s) 181, 361, 493, 743, 1104
Mly113I GGCGCC 1 cut(s) 1117
MlyI GAGTC 2 cut(s) 458, 512
MmeI TCCRAC 2 cut(s) 254, 462
MnlI CCTC 9 cut(s) 125, 201, 530, 550, 697, 833, 1042, 1051, 1057
MreI CGCCGGCG 1 cut(s) 1119
MroNI GCCGGC 1 cut(s) 1119
MroXI GAANNNNTTC 1 cut(s) 604
MseI TTAA 2 cut(s) 198, 585
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 3 cut(s) 419, 994, 1120
MspR9I CCNGG 5 cut(s) 188, 369, 641, 718, 783
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 5 cut(s) 188, 369, 641, 718, 783
MwoI GCNNNNNNNGC 2 cut(s) 84, 415
NaeI GCCGGC 1 cut(s) 1121
NarI GGCGCC 1 cut(s) 1117
NdeII GATC 5 cut(s) 146, 397, 916, 1133, 1150
NgoMIV GCCGGC 1 cut(s) 1119
NlaIII CATG 9 cut(s) 78, 91, 134, 266, 659, 781, 889, 1081, 1161
NlaIV GGNNCC 3 cut(s) 541, 930, 1118
NmeAIII GCCGAG 1 cut(s) 560
NspI RCATGY 1 cut(s) 659
PaeI GCATGC 1 cut(s) 659
PctI GAATGC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 1121
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 443, 1012
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 2 cut(s) 457, 511
PluTI GGCGCC 1 cut(s) 1120
PpsI GAGTC 2 cut(s) 457, 511
Psp6I CCWGG 5 cut(s) 186, 367, 639, 716, 781
PspFI CCCAGC 2 cut(s) 552, 923
PspGI CCWGG 5 cut(s) 186, 367, 639, 716, 781
PspN4I GGNNCC 3 cut(s) 541, 930, 1118
PspPI GGNCC 3 cut(s) 91, 190, 869
PsrI GAACNNNNNNTAC 2 cut(s) 981, 1013
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 3 cut(s) 146, 397, 1133
RsaI GTAC 1 cut(s) 853
RsaNI GTAC 1 cut(s) 852
SaqAI TTAA 2 cut(s) 198, 585
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 5 cut(s) 146, 397, 916, 1133, 1150
Sau96I GGNCC 3 cut(s) 91, 190, 869
SchI GAGTC 2 cut(s) 458, 512
ScrFI CCNGG 5 cut(s) 188, 369, 641, 718, 783
SduI GDGCHC 2 cut(s) 49, 735
SfaNI GCATC 2 cut(s) 55, 608
SfoI GGCGCC 1 cut(s) 1118
SgrAI CRCCGGYG 1 cut(s) 1119
SinI GGWCC 2 cut(s) 91, 190
SmlI CTYRAG 2 cut(s) 511, 728
SmoI CTYRAG 2 cut(s) 511, 728
SpeI ACTAGT 1 cut(s) 164
SphI GCATGC 1 cut(s) 659
Sse9I AATT 5 cut(s) 181, 361, 493, 743, 1104
SsiI CCGC 2 cut(s) 967, 974
SspDI GGCGCC 1 cut(s) 1116
SspI AATATT 1 cut(s) 1072
SspMI CTAG 6 cut(s) 165, 660, 705, 830, 957, 1137
StyD4I CCNGG 5 cut(s) 186, 367, 639, 716, 781
StyI CCWWGG 3 cut(s) 547, 872, 932
TaaI ACNGT 2 cut(s) 194, 227
TaiI ACGT 1 cut(s) 388
TaqI TCGA 3 cut(s) 468, 682, 1153
TasI AATT 5 cut(s) 181, 361, 493, 743, 1104
TfiI GAWTC 2 cut(s) 443, 1012
Tru1I TTAA 2 cut(s) 198, 585
Tru9I TTAA 2 cut(s) 198, 585
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 8 cut(s) 63, 324, 333, 486, 659, 758, 1053, 1161
VpaK11BI GGWCC 2 cut(s) 91, 190
XapI RAATTY 2 cut(s) 493, 743
XbaI TCTAGA 1 cut(s) 704
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 6 cut(s) 165, 660, 705, 830, 957, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.