Rh6BG283600

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002431
Physical Location & Seq
Reverse (-)
50677509 .. 50678816
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG283600.1

Sequence Viewer

Length: 1308 bp
ATGTATACATTCAATATACATGCTTCCATTGTTTTATGTGATATGAAAAATAAGTTGTTTTCTGCAATCGCCCTCCCTATTGATTGGTACTTGTGTCCTTGTCCTAATAAGTTCCACAGTAAATTAAACAGTTTATGCAAGATGGCTGGTGTGAAACGAAGAATAGATACTGGTTCAGATATGCGTGCTCTTTACAAAGAACTGGATGCTGTTTCATGCCCTATCTGCATGGACCATCCACATAATGCAGTTCTCCTCCTTTGCAGCTCGCATGACAAGGGTTGCAGATCTTACATTTGTGATACGAGTTACAGGCATTCAAATTGCCTGGACCGTTTTAAAAAGTTGAGGGAAAATAATACAAACTGTCCAACTTTAGTCAGTTCTTTACCTACAAACCATCATGGCTCTCATAATAATTCTGATATGGCATCAGCAACAGATTTGAATGAAGCTAATGAAAGTCCTAACTTGATTGAAAGCAATGCTGTAATATCTGCCAATTCACCTGGACAGCCACAGGAACGTGTTATTCAAGATCTAAATATGCCACTTCTGCCAGAAGAACTTTTGGGAGTGGCTGATTCCGAATCAGTTCAGGAAAGGGTTGAGCATAGTGAGTTGGACGTGGAGAATACCTCAGAGTCAAACTTGAGCTTGAAATGTCCTTTGTGTCGAGGAGACATCCTTGGCTGGGAGGTTGTGGAAGATTGCAGAAAGTATCTTAATCTGAAGAAGCGAAGTTGTTCTCGTGAAGGATGCTCCTTTTCTGGTAACTACCAGGAGTTGCGTCGGCATGCTAGGAGAGTTCATCCCACTACTCGACCCTCAGACGTTGACCCATCCAGAGAGCGAGCCTGGAGACACCTTGAGCACCAGAGAGAATTTGGTGATGTAGTTAGTGCCATTCATTCAGCCATGCCAGGAGCTGTCGTGGTTGGGGATTATGTTATTGAAAATGGAGATAGGCTAGGGGGTGGAGGGGAAAGTGGTACTGGTGAACCTAATGGCCCTTGGTGGACTACCATGTTTTTGTTTCAGATGATTGGTTCAGTTGATCGTGCTGGGGAACCGAGGGCGAGGGCAAGGGCTTGGACTAGACATCGGCGGTCAGCGGGAGCTTTATCCGAACGCCGGTTACTTTGGGGTGAGAATCTGTTGGGTCTTCAGGATGATGATGATGATGAAGATGATGAGGATGATGAGGAGGAGAACAATATTCTCATGCTGAATGACAGAGATGTATCTCCAATTCCCAGAAGGCGCCGGCGTTTGACAAGATCCAGGTCAGATGAAGATCGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

435

Amino Acids

49.15

Weight (kDa)

5.7

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 70 - 301 2.6e-70 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1263
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 1108, 1115
AclWI GGATC 1 cut(s) 1275
AcsI RAATTY 1 cut(s) 884
AcuI CTGAAG 2 cut(s) 752, 1151
AcyI GRCGYC 1 cut(s) 1264
AfaI GTAC 2 cut(s) 89, 994
AfiI CCNNNNNNNGG 2 cut(s) 694, 1134
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 7 cut(s) 13, 321, 448, 479, 536, 661, 956
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 6 cut(s) 327, 508, 780, 857, 922, 1283
AluBI AGCT 5 cut(s) 267, 455, 657, 929, 1121
AluI AGCT 5 cut(s) 267, 455, 657, 929, 1121
Alw21I GWGCWC 2 cut(s) 190, 876
Alw26I GTCTC 2 cut(s) 675, 856
AlwI GGATC 1 cut(s) 1275
AlwNI CAGNNNCTG 1 cut(s) 929
AoxI GGCC 1 cut(s) 1009
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 884
Asp700I GAANNNNTTC 2 cut(s) 594, 745
AspLEI GCGC 1 cut(s) 1266
AspS9I GGNCC 3 cut(s) 232, 331, 1010
AsuHPI GGTGA 4 cut(s) 498, 902, 1010, 1160
AvaII GGWCC 2 cut(s) 232, 331
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BanI GGYRCC 1 cut(s) 1263
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BauI CACGAG 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 1157
Bbv12I GWGCWC 2 cut(s) 190, 876
BbvI GCAGC 1 cut(s) 276
BccI CCATC 4 cut(s) 136, 243, 408, 850
BciT130I CCWGG 6 cut(s) 329, 510, 782, 859, 924, 1285
BcoDI GTCTC 2 cut(s) 675, 856
BfaI CTAG 3 cut(s) 801, 971, 1098
BfoI RGCGCY 1 cut(s) 1267
BglII AGATCT 2 cut(s) 287, 538
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 6 cut(s) 329, 510, 782, 859, 924, 1285
Bme18I GGWCC 2 cut(s) 232, 331
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 3 cut(s) 232, 331, 1010
BmiI GGNNCC 2 cut(s) 1071, 1265
BmrFI CCNGG 6 cut(s) 329, 510, 782, 859, 924, 1285
BmsI GCATC 3 cut(s) 196, 440, 749
BpiI GAAGAC 1 cut(s) 1157
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 1 cut(s) 880
BpuEI CTTGAG 2 cut(s) 673, 890
BsaBI GATNNNNATC 1 cut(s) 1296
BsaHI GRCGYC 1 cut(s) 1264
BsaJI CCNNGG 3 cut(s) 688, 1013, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 1134
Bse118I RCCGGY 2 cut(s) 1134, 1266
Bse1I ACTGG 3 cut(s) 175, 207, 1000
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 1296
BseBI CCWGG 6 cut(s) 329, 510, 782, 859, 924, 1285
BseDI CCNNGG 3 cut(s) 688, 1013, 1073
BseGI GGATG 8 cut(s) 211, 235, 684, 764, 811, 842, 1177, 1204
BseJI GATNNNNATC 1 cut(s) 1296
BseLI CCNNNNNNNGG 2 cut(s) 694, 1134
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 654, 843
BseNI ACTGG 3 cut(s) 175, 207, 1000
BseRI GAGGAG 4 cut(s) 245, 693, 1220, 1223
BseXI GCAGC 1 cut(s) 276
BseYI CCCAGC 2 cut(s) 693, 1064
BshFI GGCC 1 cut(s) 1011
BshNI GGYRCC 1 cut(s) 1263
BsiHKAI GWGCWC 2 cut(s) 190, 876
BsiSI CCGG 2 cut(s) 1135, 1267
BslI CCNNNNNNNGG 2 cut(s) 694, 1134
BsmAI GTCTC 2 cut(s) 675, 856
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 190, 876
Bsp143I GATC 5 cut(s) 287, 538, 1057, 1280, 1297
BspACI CCGC 2 cut(s) 1108, 1115
BspANI GGCC 1 cut(s) 1011
BspCNI CTCAG 2 cut(s) 653, 842
BspLI GGNNCC 2 cut(s) 1071, 1265
BspPI GGATC 1 cut(s) 1275
BspT107I GGYRCC 1 cut(s) 1263
BsrDI GCAATG 1 cut(s) 490
BsrFI RCCGGY 2 cut(s) 1134, 1266
BsrI ACTGG 3 cut(s) 175, 207, 1000
BssAI RCCGGY 2 cut(s) 1134, 1266
BssECI CCNNGG 3 cut(s) 688, 1013, 1073
BssMI GATC 5 cut(s) 287, 538, 1057, 1280, 1297
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 1264
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 2 cut(s) 688, 1013
Bst1107I GTATAC 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 6 cut(s) 329, 510, 782, 859, 924, 1285
Bst4CI ACNGT 4 cut(s) 119, 131, 335, 368
BstACI GRCGYC 1 cut(s) 1264
BstC8I GCNNGC 5 cut(s) 186, 269, 798, 855, 1268
BstDEI CTNAG 2 cut(s) 640, 829
BstF5I GGATG 8 cut(s) 211, 235, 684, 764, 811, 842, 1177, 1204
BstH2I RGCGCY 1 cut(s) 1267
BstHHI GCGC 1 cut(s) 1266
BstKTI GATC 5 cut(s) 290, 541, 1060, 1283, 1300
BstMAI GTCTC 2 cut(s) 675, 856
BstMBI GATC 5 cut(s) 287, 538, 1057, 1280, 1297
BstMWI GCNNNNNNNGC 2 cut(s) 225, 556
BstNI CCWGG 6 cut(s) 329, 510, 782, 859, 924, 1285
BstNSI RCATGY 2 cut(s) 23, 800
BstSCI CCNGG 6 cut(s) 327, 508, 780, 857, 922, 1283
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 1157
BstX2I RGATCY 3 cut(s) 287, 538, 1280
BstYI RGATCY 3 cut(s) 287, 538, 1280
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 1011
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 8 cut(s) 211, 235, 684, 764, 811, 842, 1177, 1204
Cac8I GCNNGC 5 cut(s) 186, 269, 798, 855, 1268
CaiI CAGNNNCTG 1 cut(s) 929
CfoI GCGC 1 cut(s) 1266
Cfr10I RCCGGY 2 cut(s) 1134, 1266
Cfr13I GGNCC 3 cut(s) 232, 331, 1010
CseI GACGC 1 cut(s) 779
Csp6I GTAC 2 cut(s) 88, 993
CviQI GTAC 2 cut(s) 88, 993
DdeI CTNAG 2 cut(s) 640, 829
DinI GGCGCC 1 cut(s) 1265
DpnI GATC 5 cut(s) 289, 540, 1059, 1282, 1299
DpnII GATC 5 cut(s) 287, 538, 1057, 1280, 1297
DraI TTTAAA 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 688, 1013
Eco47I GGWCC 2 cut(s) 232, 331
Eco57I CTGAAG 2 cut(s) 752, 1151
EcoRII CCWGG 6 cut(s) 327, 508, 780, 857, 922, 1283
EcoT14I CCWWGG 2 cut(s) 688, 1013
EgeI GGCGCC 1 cut(s) 1265
EheI GGCGCC 1 cut(s) 1265
ErhI CCWWGG 2 cut(s) 688, 1013
FauI CCCGC 1 cut(s) 1108
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 8 cut(s) 218, 222, 671, 771, 798, 829, 1184, 1211
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 3 cut(s) 801, 971, 1098
GlaI GCGC 1 cut(s) 1265
GluI GCNGC 1 cut(s) 265
GsaI CCCAGC 2 cut(s) 697, 1068
GsuI CTGGAG 1 cut(s) 880
HaeII RGCGCY 1 cut(s) 1267
HaeIII GGCC 1 cut(s) 1011
HapII CCGG 2 cut(s) 1135, 1267
HgaI GACGC 1 cut(s) 779
HhaI GCGC 1 cut(s) 1266
Hin1I GRCGYC 1 cut(s) 1264
Hin6I GCGC 1 cut(s) 1264
HinP1I GCGC 1 cut(s) 1264
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HinfI GANTC 4 cut(s) 584, 590, 644, 1153
HpaII CCGG 2 cut(s) 1135, 1267
HphI GGTGA 4 cut(s) 498, 902, 1010, 1160
Hpy166II GTNNAC 4 cut(s) 6, 838, 1001, 1020
Hpy188I TCNGA 9 cut(s) 178, 424, 589, 643, 732, 832, 1041, 1129, 1291
Hpy188III TCNNGA 5 cut(s) 536, 599, 752, 846, 1169
Hpy8I GTNNAC 4 cut(s) 6, 838, 1001, 1020
Hpy99I CGWCG 1 cut(s) 795
HpyAV CCTTC 2 cut(s) 749, 1254
HpyCH4III ACNGT 4 cut(s) 119, 131, 335, 368
HpyCH4IV ACGT 3 cut(s) 526, 627, 834
HpyCH4V TGCA 7 cut(s) 65, 138, 228, 248, 264, 285, 714
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 556
HpyF3I CTNAG 2 cut(s) 640, 829
HpySE526I ACGT 3 cut(s) 526, 627, 834
Hsp92I GRCGYC 1 cut(s) 1264
HspAI GCGC 1 cut(s) 1264
KasI GGCGCC 1 cut(s) 1263
KroI GCCGGC 1 cut(s) 1266
KroNI GCCGGC 1 cut(s) 1268
Kzo9I GATC 5 cut(s) 287, 538, 1057, 1280, 1297
LmnI GCTCC 3 cut(s) 767, 926, 1118
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 3 cut(s) 196, 440, 749
MaeI CTAG 3 cut(s) 801, 971, 1098
MaeII ACGT 3 cut(s) 526, 627, 834
MaeIII GTNAC 3 cut(s) 308, 773, 1137
MalI GATC 5 cut(s) 289, 540, 1059, 1282, 1299
MboI GATC 5 cut(s) 287, 538, 1057, 1280, 1297
MboII GAAGA 7 cut(s) 171, 575, 719, 745, 1157, 1199, 1307
MflI RGATCY 3 cut(s) 287, 538, 1280
MhlI GDGCHC 2 cut(s) 190, 876
MluCI AATT 6 cut(s) 122, 322, 418, 502, 884, 1251
Mly113I GGCGCC 1 cut(s) 1264
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 2 cut(s) 395, 603
MreI CGCCGGCG 1 cut(s) 1266
MroNI GCCGGC 1 cut(s) 1266
MroXI GAANNNNTTC 2 cut(s) 594, 745
MseI TTAA 3 cut(s) 125, 339, 726
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 2 cut(s) 1135, 1267
MspR9I CCNGG 6 cut(s) 329, 510, 782, 859, 924, 1285
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 6 cut(s) 329, 510, 782, 859, 924, 1285
MwoI GCNNNNNNNGC 2 cut(s) 225, 556
NaeI GCCGGC 1 cut(s) 1268
NarI GGCGCC 1 cut(s) 1264
NdeII GATC 5 cut(s) 287, 538, 1057, 1280, 1297
NgoMIV GCCGGC 1 cut(s) 1266
NlaIV GGNNCC 2 cut(s) 1071, 1265
NspI RCATGY 2 cut(s) 23, 800
PaeI GCATGC 1 cut(s) 800
PctI GAATGC 1 cut(s) 316
PdiI GCCGGC 1 cut(s) 1268
PdmI GAANNNNTTC 2 cut(s) 594, 745
PfeI GAWTC 3 cut(s) 584, 590, 1153
PkrI GCNGC 1 cut(s) 266
PleI GAGTC 1 cut(s) 652
PluTI GGCGCC 1 cut(s) 1267
PpsI GAGTC 1 cut(s) 652
Psp6I CCWGG 6 cut(s) 327, 508, 780, 857, 922, 1283
PspFI CCCAGC 2 cut(s) 693, 1064
PspGI CCWGG 6 cut(s) 327, 508, 780, 857, 922, 1283
PspN4I GGNNCC 2 cut(s) 1071, 1265
PspPI GGNCC 3 cut(s) 232, 331, 1010
PsrI GAACNNNNNNTAC 2 cut(s) 1122, 1154
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 3 cut(s) 287, 538, 1280
RsaI GTAC 2 cut(s) 89, 994
RsaNI GTAC 2 cut(s) 88, 993
SaqAI TTAA 3 cut(s) 125, 339, 726
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 5 cut(s) 287, 538, 1057, 1280, 1297
Sau96I GGNCC 3 cut(s) 232, 331, 1010
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 6 cut(s) 329, 510, 782, 859, 924, 1285
SduI GDGCHC 2 cut(s) 190, 876
SfaNI GCATC 3 cut(s) 196, 440, 749
SfoI GGCGCC 1 cut(s) 1265
SgrAI CRCCGGYG 1 cut(s) 1266
SinI GGWCC 2 cut(s) 232, 331
SmlI CTYRAG 2 cut(s) 652, 869
SmoI CTYRAG 2 cut(s) 652, 869
SphI GCATGC 1 cut(s) 800
Sse9I AATT 6 cut(s) 122, 322, 418, 502, 884, 1251
SsiI CCGC 2 cut(s) 1108, 1115
SspDI GGCGCC 1 cut(s) 1263
SspI AATATT 1 cut(s) 1219
SspMI CTAG 3 cut(s) 801, 971, 1098
StyD4I CCNGG 6 cut(s) 327, 508, 780, 857, 922, 1283
StyI CCWWGG 2 cut(s) 688, 1013
TaaI ACNGT 4 cut(s) 119, 131, 335, 368
TaiI ACGT 3 cut(s) 529, 630, 837
TaqI TCGA 3 cut(s) 676, 823, 1300
TasI AATT 6 cut(s) 122, 322, 418, 502, 884, 1251
TfiI GAWTC 3 cut(s) 584, 590, 1153
Tru1I TTAA 3 cut(s) 125, 339, 726
Tru9I TTAA 3 cut(s) 125, 339, 726
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 8 cut(s) 59, 204, 465, 474, 800, 899, 1200, 1308
VpaK11BI GGWCC 2 cut(s) 232, 331
XapI RAATTY 1 cut(s) 884
XceI RCATGY 2 cut(s) 23, 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 594, 745
XspI CTAG 3 cut(s) 801, 971, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.