Rw6G024380

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002431
Physical Location & Seq
Reverse (-)
47421850 .. 47423005
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024380.1

Sequence Viewer

Length: 975 bp
ATGGCTGGTGTGAAACGAAGAATAGATACTGGTTCAGATATTCGTGCTCTTTACAAAGAACTGGATGCTGTTTCATGCCCTATCTGCATGGACCATCCACATAATGCAGTTCTCCTCCTTTGCAGCTCGCATGACAAGGGTTGCAGATCTTACATTTGTGATACGAGTTACAGGCATTCAAATTGCCTGGACCGTTTTAAAAAGTTGAGGGAAAATAATACAAACAGTCCAACTTTAGTCAGTTCTTTACCTACAAACCATCATGGCTCTCATAATAATTCTGATATGGCATCAGCAACAGATTTGAATGAAGCTAATGAAATCAGCTTGAAATGTCCTTTGTGCCGAGGAGACATCCTTGGCTGGGAGGTTGTGGAAGATTGCAGAAAGTATCTTAATCTGAAGAAGCGAAGTTGTTCTCGTGAAGGATGCTCCTTTTCTGGTAACTACCAGGAGTTGCGTCGGCATGCTAGGAGAGTTCATCCCACTACTCGACCCTCAGACGTTGACCCATCTAGAGAGCGAGCCTGGAGACACCTTGAGCACCAGAGAGAATTTGGTGATGTAGTTAGTGCCATTCATTCAGCCATGCCAGGAGCTGTTGTGGTTGGGGATTATGTTATTGAAAATGGAGATAGGCTAGGGGGTGGAGGGGAAAGTGGTACTGGTGAAGCTAATGGCCCTTGGTGGACTACCATGTTTTTGTTTCAGATGATTGGTTCAGTTGATCGTGCTGGGGAACCGAGGGCGAGGGCAAGGGCTTGGACTAGACATCGGCGGTCAGCGGGAGCTTTATCCGAACGCCGGTTACTTTGGGGTGAGAATCTGTTGGGTCTTCAGGATGATGATGATGAAGATGATGAGGATGATGAGGAGGAGGACAATATTCTCATGCTGAATGACAGAGATGTATCTCCAATTCCCAGAAGGCGCCGGCGTTTGACAAGATCTAGGTCAGATGAAGATCGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

324

Amino Acids

36.72

Weight (kDa)

6.24

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 23 - 191 8.4e-72 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 930
AciI CCGC 2 cut(s) 778, 785
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 2 cut(s) 422, 821
AcyI GRCGYC 1 cut(s) 931
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 2 cut(s) 364, 804
AgsI TTSAA 4 cut(s) 180, 307, 331, 626
AjnI CCWGG 4 cut(s) 186, 450, 527, 592
AluBI AGCT 6 cut(s) 126, 314, 327, 599, 674, 791
AluI AGCT 6 cut(s) 126, 314, 327, 599, 674, 791
Alw21I GWGCWC 2 cut(s) 49, 546
Alw26I GTCTC 2 cut(s) 345, 526
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 1 cut(s) 679
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 415
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 3 cut(s) 91, 190, 680
AsuHPI GGTGA 3 cut(s) 572, 680, 830
AvaII GGWCC 2 cut(s) 91, 190
BanI GGYRCC 1 cut(s) 930
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
BauI CACGAG 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 2 cut(s) 49, 546
BbvI GCAGC 1 cut(s) 135
BccI CCATC 3 cut(s) 102, 267, 520
BciT130I CCWGG 4 cut(s) 188, 452, 529, 594
BcoDI GTCTC 2 cut(s) 345, 526
BfaI CTAG 5 cut(s) 471, 516, 641, 768, 951
BfoI RGCGCY 1 cut(s) 934
BglII AGATCT 2 cut(s) 146, 947
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 4 cut(s) 188, 452, 529, 594
Bme18I GGWCC 2 cut(s) 91, 190
BmgT120I GGNCC 3 cut(s) 91, 190, 680
BmiI GGNNCC 2 cut(s) 741, 932
BmrFI CCNGG 4 cut(s) 188, 452, 529, 594
BmsI GCATC 3 cut(s) 55, 299, 419
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 1 cut(s) 550
BpuEI CTTGAG 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 963
BsaHI GRCGYC 1 cut(s) 931
BsaJI CCNNGG 4 cut(s) 346, 358, 683, 743
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 804
Bse118I RCCGGY 2 cut(s) 804, 933
Bse1I ACTGG 3 cut(s) 34, 66, 670
Bse8I GATNNNNATC 1 cut(s) 963
BseBI CCWGG 4 cut(s) 188, 452, 529, 594
BseDI CCNNGG 4 cut(s) 346, 358, 683, 743
BseGI GGATG 7 cut(s) 70, 94, 354, 434, 481, 847, 871
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 2 cut(s) 364, 804
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 3 cut(s) 34, 66, 670
BseRI GAGGAG 4 cut(s) 104, 363, 887, 890
BseXI GCAGC 1 cut(s) 135
BseYI CCCAGC 2 cut(s) 363, 734
BshFI GGCC 1 cut(s) 681
BshNI GGYRCC 1 cut(s) 930
BsiHKAI GWGCWC 2 cut(s) 49, 546
BsiSI CCGG 2 cut(s) 805, 934
BslI CCNNNNNNNGG 2 cut(s) 364, 804
BsmAI GTCTC 2 cut(s) 345, 526
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 49, 546
Bsp143I GATC 4 cut(s) 146, 727, 947, 964
BspACI CCGC 2 cut(s) 778, 785
BspANI GGCC 1 cut(s) 681
BspCNI CTCAG 1 cut(s) 512
BspLI GGNNCC 2 cut(s) 741, 932
BspT107I GGYRCC 1 cut(s) 930
BsrFI RCCGGY 2 cut(s) 804, 933
BsrI ACTGG 3 cut(s) 34, 66, 670
BssAI RCCGGY 2 cut(s) 804, 933
BssECI CCNNGG 4 cut(s) 346, 358, 683, 743
BssMI GATC 4 cut(s) 146, 727, 947, 964
BssNI GRCGYC 1 cut(s) 931
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 358, 683
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 4 cut(s) 188, 452, 529, 594
Bst4CI ACNGT 2 cut(s) 194, 227
BstACI GRCGYC 1 cut(s) 931
BstC8I GCNNGC 4 cut(s) 128, 468, 525, 935
BstDEI CTNAG 1 cut(s) 499
BstF5I GGATG 7 cut(s) 70, 94, 354, 434, 481, 847, 871
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 4 cut(s) 149, 730, 950, 967
BstMAI GTCTC 2 cut(s) 345, 526
BstMBI GATC 4 cut(s) 146, 727, 947, 964
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 4 cut(s) 188, 452, 529, 594
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 4 cut(s) 186, 450, 527, 592
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 2 cut(s) 146, 947
BstYI RGATCY 2 cut(s) 146, 947
BsuRI GGCC 1 cut(s) 681
BtsCI GGATG 7 cut(s) 70, 94, 354, 434, 481, 847, 871
Cac8I GCNNGC 4 cut(s) 128, 468, 525, 935
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 1 cut(s) 933
Cfr10I RCCGGY 2 cut(s) 804, 933
Cfr13I GGNCC 3 cut(s) 91, 190, 680
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 663
CviAII CATG 9 cut(s) 75, 88, 131, 263, 467, 589, 697, 892, 972
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 1 cut(s) 499
DinI GGCGCC 1 cut(s) 932
DpnI GATC 4 cut(s) 148, 729, 949, 966
DpnII GATC 4 cut(s) 146, 727, 947, 964
DraI TTTAAA 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 358, 683
Eco47I GGWCC 2 cut(s) 91, 190
Eco57I CTGAAG 2 cut(s) 422, 821
EcoRII CCWGG 4 cut(s) 186, 450, 527, 592
EcoT14I CCWWGG 2 cut(s) 358, 683
EgeI GGCGCC 1 cut(s) 932
EheI GGCGCC 1 cut(s) 932
ErhI CCWWGG 2 cut(s) 358, 683
FaeI CATG 9 cut(s) 78, 91, 134, 266, 470, 592, 700, 895, 975
FatI CATG 9 cut(s) 74, 87, 130, 262, 466, 588, 696, 891, 971
FauI CCCGC 1 cut(s) 778
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 7 cut(s) 77, 81, 341, 441, 468, 854, 878
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 5 cut(s) 471, 516, 641, 768, 951
GlaI GCGC 1 cut(s) 932
GluI GCNGC 1 cut(s) 124
GsaI CCCAGC 2 cut(s) 367, 738
GsuI CTGGAG 1 cut(s) 550
HaeII RGCGCY 1 cut(s) 934
HaeIII GGCC 1 cut(s) 681
HapII CCGG 2 cut(s) 805, 934
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 933
Hin1I GRCGYC 1 cut(s) 931
Hin1II CATG 9 cut(s) 78, 91, 134, 266, 470, 592, 700, 895, 975
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 1 cut(s) 823
HpaII CCGG 2 cut(s) 805, 934
HphI GGTGA 3 cut(s) 572, 680, 830
Hpy166II GTNNAC 2 cut(s) 508, 690
Hpy188I TCNGA 7 cut(s) 37, 283, 402, 502, 711, 799, 958
Hpy188III TCNNGA 3 cut(s) 422, 516, 839
Hpy8I GTNNAC 2 cut(s) 508, 690
Hpy99I CGWCG 1 cut(s) 465
HpyAV CCTTC 2 cut(s) 419, 921
HpyCH4III ACNGT 2 cut(s) 194, 227
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 5 cut(s) 87, 107, 123, 144, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 499
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 1 cut(s) 931
Hsp92II CATG 9 cut(s) 78, 91, 134, 266, 470, 592, 700, 895, 975
HspAI GCGC 1 cut(s) 931
KasI GGCGCC 1 cut(s) 930
KroI GCCGGC 1 cut(s) 933
KroNI GCCGGC 1 cut(s) 935
Kzo9I GATC 4 cut(s) 146, 727, 947, 964
LmnI GCTCC 3 cut(s) 437, 596, 788
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 3 cut(s) 55, 299, 419
MaeI CTAG 5 cut(s) 471, 516, 641, 768, 951
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 167, 443, 807
MalI GATC 4 cut(s) 148, 729, 949, 966
MboI GATC 4 cut(s) 146, 727, 947, 964
MboII GAAGA 6 cut(s) 30, 389, 415, 827, 866, 974
MflI RGATCY 2 cut(s) 146, 947
MhlI GDGCHC 2 cut(s) 49, 546
MluCI AATT 4 cut(s) 181, 277, 554, 918
Mly113I GGCGCC 1 cut(s) 931
MmeI TCCRAC 1 cut(s) 254
MreI CGCCGGCG 1 cut(s) 933
MroNI GCCGGC 1 cut(s) 933
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 2 cut(s) 198, 396
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 2 cut(s) 805, 934
MspR9I CCNGG 4 cut(s) 188, 452, 529, 594
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 4 cut(s) 188, 452, 529, 594
MwoI GCNNNNNNNGC 1 cut(s) 84
NaeI GCCGGC 1 cut(s) 935
NarI GGCGCC 1 cut(s) 931
NdeII GATC 4 cut(s) 146, 727, 947, 964
NgoMIV GCCGGC 1 cut(s) 933
NlaIII CATG 9 cut(s) 78, 91, 134, 266, 470, 592, 700, 895, 975
NlaIV GGNNCC 2 cut(s) 741, 932
NmeAIII GCCGAG 1 cut(s) 371
NspI RCATGY 1 cut(s) 470
PaeI GCATGC 1 cut(s) 470
PctI GAATGC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 935
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 823
PkrI GCNGC 1 cut(s) 125
PluTI GGCGCC 1 cut(s) 934
Psp6I CCWGG 4 cut(s) 186, 450, 527, 592
PspFI CCCAGC 2 cut(s) 363, 734
PspGI CCWGG 4 cut(s) 186, 450, 527, 592
PspN4I GGNNCC 2 cut(s) 741, 932
PspPI GGNCC 3 cut(s) 91, 190, 680
PsrI GAACNNNNNNTAC 2 cut(s) 792, 824
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 146, 947
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
SaqAI TTAA 2 cut(s) 198, 396
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 4 cut(s) 146, 727, 947, 964
Sau96I GGNCC 3 cut(s) 91, 190, 680
ScrFI CCNGG 4 cut(s) 188, 452, 529, 594
SduI GDGCHC 2 cut(s) 49, 546
SfaNI GCATC 3 cut(s) 55, 299, 419
SfoI GGCGCC 1 cut(s) 932
SgrAI CRCCGGYG 1 cut(s) 933
SinI GGWCC 2 cut(s) 91, 190
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SphI GCATGC 1 cut(s) 470
Sse9I AATT 4 cut(s) 181, 277, 554, 918
SsiI CCGC 2 cut(s) 778, 785
SspDI GGCGCC 1 cut(s) 930
SspI AATATT 1 cut(s) 886
SspMI CTAG 5 cut(s) 471, 516, 641, 768, 951
StyD4I CCNGG 4 cut(s) 186, 450, 527, 592
StyI CCWWGG 2 cut(s) 358, 683
TaaI ACNGT 2 cut(s) 194, 227
TaiI ACGT 1 cut(s) 507
TaqI TCGA 2 cut(s) 493, 967
TasI AATT 4 cut(s) 181, 277, 554, 918
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 2 cut(s) 198, 396
Tru9I TTAA 2 cut(s) 198, 396
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 7 cut(s) 63, 324, 333, 470, 569, 867, 975
VpaK11BI GGWCC 2 cut(s) 91, 190
XapI RAATTY 1 cut(s) 554
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 5 cut(s) 471, 516, 641, 768, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.