Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022341.1

Orthogroup ID

OG0002431

Physical Location & Seq

Genomic Coordinates Reverse (-)

234 .. 620

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022341.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgccaggagctgtcgtggttggggattatgttattgaaaatggagataggctagggggtggaggggaaagtggtactggtgaagctaatggcccttggtggactaccatgtttttgtttcagatgattggttcagttgatcgtgctggggaacctagggcgagggcaagggcttggactagacatcggcggtcagcaggagctttatccgaacgccggttactttggggtgagaatctgttgggtcttcaggatgatgatgatgaagatgatgaggatgatgaggaggaggacaatattctcatgctgaatgacagagatgtatctccaattcccagaaggcgccggcgtttgacaagatctaggtcagatgaagatcgaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

4.64

Isoelectric Point (pI)

74.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740 AT3G24740
fragaria_vesca	FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370 FvH4_2g19370
malus_domestica	MD05G1178600.v1.1 MD10G1166800.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1 Prupe.8G205000_v2.0.a1
pyrus_communis	pycom10g14380
rosa_chinensis	RchiOBHm_Chr6g0285161
rosa_laevigata	RLG00000012667
rosa_multiflora	Rmu_sc0006801.1_g000001 Rmu_sc0022341.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183590 Rroxscaffold_7G00183980
rosa_rugosa	Rorug06G0172400 Rorug06G0172500 Rorug06G0172500 Rorug06G0172600 Rorug06G0172700 Rorug06G0172800 Rorug06G0172900 Rorug06G0172900
rosa_samantha	Rh6AG282800 Rh6BG283600 Rh6CG285500 Rh6DG278600
rosa_wichuraiana	Rw6G024320 Rw6G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	342
AciI	CCGC	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	343
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	3 cut(s)	11, 86, 203
AluI	AGCT	3 cut(s)	11, 86, 203
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	91
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	92, 242
AvrII	CCTAGG	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	6
BfaI	CTAG	4 cut(s)	53, 156, 180, 363
BfoI	RGCGCY	1 cut(s)	346
BglII	AGATCT	1 cut(s)	359
BlnI	CCTAGG	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	153, 344
BmrFI	CCNGG	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	95, 155
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse118I	RCCGGY	2 cut(s)	216, 345
Bse1I	ACTGG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	95, 155
BseGI	GGATG	2 cut(s)	259, 283
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	299, 302
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	217, 346
BslI	CCNNNNNNNGG	1 cut(s)	216
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	139, 359, 376
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	153, 344
BspT107I	GGYRCC	1 cut(s)	342
BsrFI	RCCGGY	2 cut(s)	216, 345
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	2 cut(s)	216, 345
BssECI	CCNNGG	2 cut(s)	95, 155
BssMI	GATC	3 cut(s)	139, 359, 376
BssNI	GRCGYC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	95, 155
Bst2UI	CCWGG	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	259, 283
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	3 cut(s)	142, 362, 379
BstMBI	GATC	3 cut(s)	139, 359, 376
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	259, 283
Cac8I	GCNNGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	2 cut(s)	216, 345
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	3 cut(s)	109, 304, 384
CviJI	RGCY	6 cut(s)	11, 52, 86, 93, 173, 203
CviKI_1	RGCY	6 cut(s)	11, 52, 86, 93, 173, 203
CviQI	GTAC	1 cut(s)	75
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	3 cut(s)	141, 361, 378
DpnII	GATC	3 cut(s)	139, 359, 376
Eco130I	CCWWGG	2 cut(s)	95, 155
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	95, 155
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	2 cut(s)	95, 155
FaeI	CATG	3 cut(s)	112, 307, 387
FaiI	YATR	4 cut(s)	30, 110, 305, 385
FatI	CATG	3 cut(s)	108, 303, 383
FokI	GGATG	2 cut(s)	266, 290
FspBI	CTAG	4 cut(s)	53, 156, 180, 363
GlaI	GCGC	1 cut(s)	344
GsaI	CCCAGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	217, 346
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	112, 307, 387
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	217, 346
HphI	GGTGA	2 cut(s)	92, 242
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	3 cut(s)	123, 211, 370
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	112, 307, 387
HspAI	GCGC	1 cut(s)	343
KasI	GGCGCC	1 cut(s)	342
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	139, 359, 376
LmnI	GCTCC	2 cut(s)	8, 200
LpnPI	CCDG	8 cut(s)	18, 63, 132, 183, 230, 236, 349, 359
MaeI	CTAG	4 cut(s)	53, 156, 180, 363
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	141, 361, 378
MboI	GATC	3 cut(s)	139, 359, 376
MboII	GAAGA	3 cut(s)	239, 278, 386
MflI	RGATCY	1 cut(s)	359
MluCI	AATT	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	343
MnlI	CCTC	6 cut(s)	56, 156, 268, 277, 280, 283
MreI	CGCCGGCG	1 cut(s)	345
MroNI	GCCGGC	1 cut(s)	345
MspI	CCGG	2 cut(s)	217, 346
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NaeI	GCCGGC	1 cut(s)	347
NarI	GGCGCC	1 cut(s)	343
NdeII	GATC	3 cut(s)	139, 359, 376
NgoMIV	GCCGGC	1 cut(s)	345
NlaIII	CATG	3 cut(s)	112, 307, 387
NlaIV	GGNNCC	2 cut(s)	153, 344
PdiI	GCCGGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	235
PluTI	GGCGCC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	153, 344
PspPI	GGNCC	1 cut(s)	92
PsrI	GAACNNNNNNTAC	2 cut(s)	204, 236
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	139, 359, 376
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	5 cut(s)	13, 88, 157, 205, 368
SfoI	GGCGCC	1 cut(s)	344
SgrAI	CRCCGGYG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	190
SspDI	GGCGCC	1 cut(s)	342
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	4 cut(s)	53, 156, 180, 363
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	95, 155
TaqI	TCGA	1 cut(s)	379
TasI	AATT	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	279, 387
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	4 cut(s)	53, 156, 180, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.