Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Reverse (-)

20794678 .. 20795974

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCAGTTAGCACACTCAGTCATGACAATTGCACGTGAATGGATTCCTGCAAATGTAAACAATGAAAATAACGAAATTAATTCATCATTTTCTCCCAATATACATATCAAATCAATTGGAAAGACCAAGCTAAAATGGGTGAGGAATATAGCACAGGCTTGCTTTGATAGTACTCTTCATTTGAGGAGACTTGATAGCATAAATAGGAGGCAGCAAAAGCAGTGTTGGACTCGATCCATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATGCAGCTAATGTAGGCAGCAAGACTTTACCAGTAAGTGACTCGACGTTATCAACCTCTACTAACAAAAACCATGACCAACGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCATGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCTGCCTACTCGGCAATTTCTGTAGCATCTTCATTGAAGAATGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTTCAAGACTCAGATGACTGGCAACCCAAGAATGGGAATTGGATCACTTCAGACTCTGACTTTGTTGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.29

Weight (kDa)

9.64

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	228, 752
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	1 cut(s)	735
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	172, 543
AfiI	CCNNNNNNNGG	2 cut(s)	734, 735
AgsI	TTSAA	5 cut(s)	658, 683, 691, 696, 707
AluBI	AGCT	8 cut(s)	130, 299, 442, 473, 585, 606, 703, 778
AluI	AGCT	8 cut(s)	130, 299, 442, 473, 585, 606, 703, 778
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	228, 752
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	7 cut(s)	211, 296, 309, 455, 458, 461, 606
ApoI	RAATTY	1 cut(s)	691
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	151
BbrPI	CACGTG	1 cut(s)	35
BbvI	GCAGC	7 cut(s)	223, 308, 321, 442, 445, 473, 593
BccI	CCATC	2 cut(s)	444, 585
BclI	TGATCA	2 cut(s)	553, 664
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	264, 773
BfmI	CTRYAG	2 cut(s)	459, 642
BglI	GCCNNNNNGGC	1 cut(s)	632
BisI	GCNGC	7 cut(s)	212, 297, 310, 456, 459, 462, 607
BlsI	GCNGC	7 cut(s)	213, 298, 311, 457, 460, 463, 608
BmcAI	AGTACT	1 cut(s)	172
BmsI	GCATC	3 cut(s)	283, 389, 656
BsaAI	YACGTR	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	2 cut(s)	734, 735
Bse1I	ACTGG	3 cut(s)	323, 539, 725
Bse3DI	GCAATG	1 cut(s)	571
Bse8I	GATNNNNATC	1 cut(s)	552
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	734, 735
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	30, 726
BseNI	ACTGG	3 cut(s)	323, 539, 725
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	7 cut(s)	223, 308, 321, 442, 445, 473, 593
BshFI	GGCC	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	734, 735
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	233, 553, 579, 664, 744
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	2 cut(s)	29, 725
BspHI	TCATGA	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	2 cut(s)	228, 752
BsrDI	GCAATG	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	323, 539, 725
BssMI	GATC	5 cut(s)	233, 553, 579, 664, 744
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	16, 712
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	5 cut(s)	236, 556, 582, 667, 747
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	5 cut(s)	233, 553, 579, 664, 744
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 461, 470, 632
BstSFI	CTRYAG	2 cut(s)	459, 642
BstV1I	GCAGC	7 cut(s)	223, 308, 321, 442, 445, 473, 593
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	758
CciI	TCATGA	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	171, 542
CviAII	CATG	4 cut(s)	22, 238, 365, 524
CviQI	GTAC	2 cut(s)	171, 542
DdeI	CTNAG	2 cut(s)	16, 712
DpnI	GATC	5 cut(s)	235, 555, 581, 666, 746
DpnII	GATC	5 cut(s)	233, 553, 579, 664, 744
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	735
Eco72I	CACGTG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	691
FaeI	CATG	4 cut(s)	25, 241, 368, 527
FalI	AAGNNNNNCTT	2 cut(s)	569, 601
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	4 cut(s)	21, 237, 364, 523
FbaI	TGATCA	2 cut(s)	553, 664
Fnu4HI	GCNGC	7 cut(s)	212, 297, 310, 456, 459, 462, 607
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	7 cut(s)	212, 297, 310, 456, 459, 462, 607
FspBI	CTAG	2 cut(s)	264, 773
GluI	GCNGC	7 cut(s)	212, 297, 310, 456, 459, 462, 607
HaeIII	GGCC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	25, 241, 368, 527
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	6 cut(s)	43, 229, 332, 569, 710, 755
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	4 cut(s)	385, 715, 754, 760
Hpy188III	TCNNGA	3 cut(s)	22, 429, 707
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	430
HpyCH4IV	ACGT	3 cut(s)	34, 338, 373
HpyCH4V	TGCA	6 cut(s)	4, 32, 50, 296, 461, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 461, 470, 632
HpyF3I	CTNAG	2 cut(s)	16, 712
HpySE526I	ACGT	3 cut(s)	34, 338, 373
Hsp92II	CATG	4 cut(s)	25, 241, 368, 527
Ksp22I	TGATCA	2 cut(s)	553, 664
Kzo9I	GATC	5 cut(s)	233, 553, 579, 664, 744
LmnI	GCTCC	3 cut(s)	377, 439, 614
LpnPI	CCDG	6 cut(s)	60, 140, 336, 552, 558, 706
Lsp1109I	GCAGC	7 cut(s)	223, 308, 321, 442, 445, 473, 593
LweI	GCATC	3 cut(s)	283, 389, 656
MaeI	CTAG	2 cut(s)	264, 773
MaeII	ACGT	3 cut(s)	34, 338, 373
MaeIII	GTNAC	2 cut(s)	281, 329
MalI	GATC	5 cut(s)	235, 555, 581, 666, 746
MboI	GATC	5 cut(s)	233, 553, 579, 664, 744
MboII	GAAGA	6 cut(s)	167, 253, 259, 266, 642, 670
MfeI	CAATTG	2 cut(s)	27, 114
MlyI	GAGTC	5 cut(s)	223, 326, 563, 704, 749
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	6 cut(s)	135, 177, 201, 260, 358, 631
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	3 cut(s)	78, 402, 560
MslI	CAYNNNNRTG	2 cut(s)	37, 242
MspA1I	CMGCKG	1 cut(s)	473
MunI	CAATTG	2 cut(s)	27, 114
MwoI	GCNNNNNNNGC	4 cut(s)	217, 461, 470, 632
NdeII	GATC	5 cut(s)	233, 553, 579, 664, 744
NlaIII	CATG	4 cut(s)	25, 241, 368, 527
NmeAIII	GCCGAG	1 cut(s)	611
NmuCI	GTSAC	1 cut(s)	329
PagI	TCATGA	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	213, 298, 311, 457, 460, 463, 608
PleI	GAGTC	5 cut(s)	223, 326, 563, 704, 749
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
PpsI	GAGTC	5 cut(s)	223, 326, 563, 704, 749
Ppu21I	YACGTR	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	2 cut(s)	172, 543
RsaNI	GTAC	2 cut(s)	171, 542
RseI	CAYNNNNRTG	2 cut(s)	37, 242
SaqAI	TTAA	3 cut(s)	78, 402, 560
SatI	GCNGC	7 cut(s)	212, 297, 310, 456, 459, 462, 607
Sau3AI	GATC	5 cut(s)	233, 553, 579, 664, 744
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	5 cut(s)	223, 326, 563, 704, 749
SfaNI	GCATC	3 cut(s)	283, 389, 656
SfcI	CTRYAG	2 cut(s)	459, 642
SmiMI	CAYNNNNRTG	2 cut(s)	37, 242
SspMI	CTAG	2 cut(s)	264, 773
TaiI	ACGT	3 cut(s)	37, 341, 376
TaqI	TCGA	2 cut(s)	232, 335
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	78, 402, 560
Tru9I	TTAA	3 cut(s)	78, 402, 560
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	7 cut(s)	211, 296, 309, 455, 458, 461, 606
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	8 cut(s)	72, 78, 167, 254, 260, 449, 642, 689
TspRI	CASTG	1 cut(s)	227
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	264, 773
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.