Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002535.1

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Forward (+)

72499 .. 75264

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002535.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgagtccccagcgacacatgaatgcgaaaatagcgacaggtttgatgagaggaacttattccttcccggcgcagtttcttcgatggctttctaaagttacacaaggacaagcaagagaggagacttctgctcctaccaacaagaaaaaagaaattagtgatcaagaagctaaacagaactacataattgtctttaagagtgggggtgttagtgtctatcaaaaaacaaaaggatttgaagaaagcaaacgcactcgtaagaagttcaagccatttgcctttctgtgtagaaaggatatagcacaggcttgctttgatagtactcttcatttgaggagactcgatagcataaataggaggcagcaaaagcagtgttggactcgatccatgaagatgaagaaagaagatattgctagaggtttggaaaatagtaacaaggtggatgcagctaatgtaggcagcaaggttttaccagtaagtgactcgacgttatcaacctctactgacaaaaaccgtgaccaacgtggagcatcagaaaagaaagaaagaattaagggggacaagactaaaacattatcaagaatgaaggagctaataagatgggctgctgcagcaaaatcagctgaaaagggtggaaaatacattggccgaaaggttctgcaatttcgcaatcgtggaactctaaaaccagtaccagatgatgatcagttaagcaatgactccccaaagatcagctttagatgggaattggaaagctgctccaccacttcctctgcctactcggcaatttcagtagcatcttcattgaagaatgatcaaattatgaacattcaatctttgaattcaacgaagcttcaggactcagatcactggcaacccaagaatgggaattggatcacctcagactcagactttgttgtgctagagctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

35.14

Weight (kDa)

9.95

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	378, 902
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	1 cut(s)	839
AfaI	GTAC	2 cut(s)	322, 693
AfiI	CCNNNNNNNGG	2 cut(s)	884, 885
AgsI	TTSAA	6 cut(s)	239, 268, 808, 833, 841, 846
AluBI	AGCT	8 cut(s)	170, 449, 592, 623, 735, 756, 853, 928
AluI	AGCT	8 cut(s)	170, 449, 592, 623, 735, 756, 853, 928
Alw26I	GTCTC	2 cut(s)	116, 331
AlwI	GGATC	2 cut(s)	378, 902
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	7 cut(s)	361, 446, 459, 605, 608, 611, 756
ApoI	RAATTY	1 cut(s)	841
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	889
BbvI	GCAGC	7 cut(s)	373, 458, 471, 592, 595, 623, 743
BccI	CCATC	3 cut(s)	78, 594, 735
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BclI	TGATCA	3 cut(s)	160, 703, 814
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	116, 331
BfaI	CTAG	2 cut(s)	414, 923
BfmI	CTRYAG	1 cut(s)	609
BglI	GCCNNNNNGGC	1 cut(s)	782
BisI	GCNGC	7 cut(s)	362, 447, 460, 606, 609, 612, 757
BlsI	GCNGC	7 cut(s)	363, 448, 461, 607, 610, 613, 758
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	3 cut(s)	433, 539, 806
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	702
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	884, 885
Bse1I	ACTGG	3 cut(s)	473, 689, 875
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	1 cut(s)	702
BseGI	GGATG	1 cut(s)	448
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	884, 885
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	3 cut(s)	876, 915, 921
BseNI	ACTGG	3 cut(s)	473, 689, 875
BseRI	GAGGAG	2 cut(s)	134, 349
BseXI	GCAGC	7 cut(s)	373, 458, 471, 592, 595, 623, 743
BseYI	CCCAGC	1 cut(s)	9
BshFI	GGCC	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	884, 885
BsmAI	GTCTC	2 cut(s)	116, 331
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	648
Bsp143I	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	3 cut(s)	875, 914, 920
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	2 cut(s)	378, 902
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	3 cut(s)	473, 689, 875
BssMI	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	862, 901, 907
BstF5I	GGATG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	7 cut(s)	163, 386, 706, 732, 817, 868, 897
BstMAI	GTCTC	2 cut(s)	116, 331
BstMBI	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 367, 611, 620, 782
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	7 cut(s)	373, 458, 471, 592, 595, 623, 743
BsuRI	GGCC	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	377, 868
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	321, 692
CviAII	CATG	2 cut(s)	19, 388
CviQI	GTAC	2 cut(s)	321, 692
DdeI	CTNAG	3 cut(s)	862, 901, 907
DpnI	GATC	7 cut(s)	162, 385, 705, 731, 816, 867, 896
DpnII	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	839
EcoRI	GAATTC	1 cut(s)	841
FaeI	CATG	2 cut(s)	22, 391
FaiI	YATR	7 cut(s)	20, 185, 299, 350, 389, 824, 931
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	2 cut(s)	18, 387
FbaI	TGATCA	3 cut(s)	160, 703, 814
Fnu4HI	GCNGC	7 cut(s)	362, 447, 460, 606, 609, 612, 757
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	7 cut(s)	362, 447, 460, 606, 609, 612, 757
FspBI	CTAG	2 cut(s)	414, 923
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	7 cut(s)	362, 447, 460, 606, 609, 612, 757
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	22, 391
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	7 cut(s)	4, 339, 379, 482, 719, 860, 905
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	889
Hpy188I	TCNGA	4 cut(s)	535, 865, 904, 910
Hpy188III	TCNNGA	3 cut(s)	164, 579, 857
Hpy99I	CGWCG	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	73, 580
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	2 cut(s)	488, 523
HpyCH4V	TGCA	3 cut(s)	446, 611, 661
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 367, 611, 620, 782
HpyF3I	CTNAG	3 cut(s)	862, 901, 907
HpySE526I	ACGT	2 cut(s)	488, 523
Hsp92II	CATG	2 cut(s)	22, 391
HspAI	GCGC	1 cut(s)	71
Ksp22I	TGATCA	3 cut(s)	160, 703, 814
Kzo9I	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
LmnI	GCTCC	4 cut(s)	136, 527, 589, 764
LpnPI	CCDG	9 cut(s)	23, 24, 81, 290, 486, 702, 708, 842, 856
Lsp1109I	GCAGC	7 cut(s)	373, 458, 471, 592, 595, 623, 743
LweI	GCATC	3 cut(s)	433, 539, 806
MaeI	CTAG	2 cut(s)	414, 923
MaeII	ACGT	2 cut(s)	488, 523
MaeIII	GTNAC	4 cut(s)	97, 431, 479, 515
MalI	GATC	7 cut(s)	162, 385, 705, 731, 816, 867, 896
MboI	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
MboII	GAAGA	8 cut(s)	71, 251, 317, 403, 409, 416, 792, 820
MluCI	AATT	9 cut(s)	153, 186, 549, 662, 746, 786, 819, 841, 889
MlyI	GAGTC	7 cut(s)	13, 333, 373, 476, 713, 854, 899
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	44, 112, 327, 351, 410, 508, 781, 910
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	3 cut(s)	195, 552, 710
MslI	CAYNNNNRTG	2 cut(s)	21, 392
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	28
MwoI	GCNNNNNNNGC	5 cut(s)	32, 367, 611, 620, 782
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
NlaIII	CATG	2 cut(s)	22, 391
NmeAIII	GCCGAG	1 cut(s)	761
NmuCI	GTSAC	2 cut(s)	479, 515
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	58
PkrI	GCNGC	7 cut(s)	363, 448, 461, 607, 610, 613, 758
PleI	GAGTC	7 cut(s)	12, 333, 373, 476, 713, 854, 899
PpsI	GAGTC	7 cut(s)	12, 333, 373, 476, 713, 854, 899
PspFI	CCCAGC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	613
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	322, 693
RsaNI	GTAC	2 cut(s)	321, 692
RseI	CAYNNNNRTG	2 cut(s)	21, 392
SaqAI	TTAA	3 cut(s)	195, 552, 710
SatI	GCNGC	7 cut(s)	362, 447, 460, 606, 609, 612, 757
Sau3AI	GATC	7 cut(s)	160, 383, 703, 729, 814, 865, 894
ScaI	AGTACT	1 cut(s)	322
SchI	GAGTC	7 cut(s)	13, 333, 373, 476, 713, 854, 899
ScrFI	CCNGG	1 cut(s)	68
SfaNI	GCATC	3 cut(s)	433, 539, 806
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	21, 392
Sse9I	AATT	9 cut(s)	153, 186, 549, 662, 746, 786, 819, 841, 889
SspMI	CTAG	2 cut(s)	414, 923
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	2 cut(s)	491, 526
TaqI	TCGA	4 cut(s)	82, 342, 382, 485
TasI	AATT	9 cut(s)	153, 186, 549, 662, 746, 786, 819, 841, 889
TatI	WGTACW	1 cut(s)	320
Tru1I	TTAA	3 cut(s)	195, 552, 710
Tru9I	TTAA	3 cut(s)	195, 552, 710
TscAI	CASTG	2 cut(s)	377, 875
TseFI	GTSAC	2 cut(s)	479, 515
TseI	GCWGC	7 cut(s)	361, 446, 459, 605, 608, 611, 756
Tsp45I	GTSAC	2 cut(s)	479, 515
TspDTI	ATGAA	7 cut(s)	35, 317, 404, 410, 599, 792, 839
TspRI	CASTG	2 cut(s)	377, 875
XapI	RAATTY	1 cut(s)	841
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	2 cut(s)	414, 923
ZrmI	AGTACT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.