Rh6DG278500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007020
Physical Location & Seq
Reverse (-)
47262558 .. 47263954
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG278500.1

Sequence Viewer

Length: 867 bp
ATGCAGCAGTTTCTTCGATGGCTTTCTAAAGTTACACAAGGACAAGCAAGAGAGGAGACTTCTGCTCCTACCAACAAGAAAAAAGAAATTAGTGATCAAGAAGCTAAACAGAACTACATAATTGTCTTTAAGAGTGGGGGTGTTGGTGTCTATCGAAAAACAAAAGGATTTGAAGAAGGCAAACCCGCTCGTAAGAAGTTCAAGCCATTTGCCTTTCTGTGTAGAAAGGATATAGCACAGGCTTGCTTTGATAGTACTCTTCATTTGAGGAGACTTGATAGCATAAATAGGAGGCAGCAAAAGCAGTGTTGGACTCGATCCATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATGCAGCTAATGTAGGCAGCAAGGTTTTACCAGTAAGTGACTCAACGTTATCAACCTCTACTAACAAAAACCATGACCAATGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCGTGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCTGCCTACTCGGCAATTTCAGTAGCATCTTCATTGAAGACTGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTTCAGGACACAGATCACTGGCAACCCAAGAATGGGAATTGGATCACTTCAGACTCTGACTTTGTTGTGCTAGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.56

Weight (kDa)

9.78

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AciI CCGC 1 cut(s) 186
AclI AACGTT 1 cut(s) 422
AclWI GGATC 2 cut(s) 312, 836
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 1 cut(s) 775
AcuI CTGAAG 2 cut(s) 773, 819
AfaI GTAC 2 cut(s) 256, 627
AfiI CCNNNNNNNGG 2 cut(s) 818, 819
AgsI TTSAA 6 cut(s) 173, 202, 742, 767, 775, 780
AluBI AGCT 8 cut(s) 104, 383, 526, 557, 669, 690, 787, 862
AluI AGCT 8 cut(s) 104, 383, 526, 557, 669, 690, 787, 862
Alw26I GTCTC 2 cut(s) 50, 265
AlwI GGATC 2 cut(s) 312, 836
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 8 cut(s) 4, 295, 380, 393, 539, 542, 545, 690
ApoI RAATTY 1 cut(s) 775
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
BbsI GAAGAC 1 cut(s) 749
BbvI GCAGC 8 cut(s) 16, 307, 392, 405, 526, 529, 557, 677
BccI CCATC 3 cut(s) 12, 528, 669
BcgI CGANNNNNNTGC 1 cut(s) 30
BclI TGATCA 3 cut(s) 94, 637, 748
BcoDI GTCTC 2 cut(s) 50, 265
BfaI CTAG 2 cut(s) 348, 857
BfmI CTRYAG 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 716
BisI GCNGC 8 cut(s) 5, 296, 381, 394, 540, 543, 546, 691
BlsI GCNGC 8 cut(s) 6, 297, 382, 395, 541, 544, 547, 692
BmcAI AGTACT 1 cut(s) 256
BmsI GCATC 3 cut(s) 367, 473, 740
BpiI GAAGAC 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 636
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 2 cut(s) 818, 819
Bse1I ACTGG 3 cut(s) 407, 623, 809
Bse3DI GCAATG 1 cut(s) 655
Bse8I GATNNNNATC 1 cut(s) 636
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 2 cut(s) 818, 819
BseMI GCAATG 1 cut(s) 655
BseNI ACTGG 3 cut(s) 407, 623, 809
BseRI GAGGAG 2 cut(s) 68, 283
BseXI GCAGC 8 cut(s) 16, 307, 392, 405, 526, 529, 557, 677
BshFI GGCC 1 cut(s) 582
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 818, 819
BsmAI GTCTC 2 cut(s) 50, 265
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 1 cut(s) 582
Bsp143I GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 582
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 2 cut(s) 312, 836
BsrBI CCGCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 655
BsrI ACTGG 3 cut(s) 407, 623, 809
BssMI GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 244
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 7 cut(s) 97, 320, 640, 666, 751, 802, 831
BstMAI GTCTC 2 cut(s) 50, 265
BstMBI GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
BstMWI GCNNNNNNNGC 4 cut(s) 301, 545, 554, 716
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 8 cut(s) 16, 307, 392, 405, 526, 529, 557, 677
BstV2I GAAGAC 1 cut(s) 749
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 2 cut(s) 311, 802
Cac8I GCNNGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 842
Csp6I GTAC 2 cut(s) 255, 626
CviAII CATG 2 cut(s) 322, 449
CviQI GTAC 2 cut(s) 255, 626
DpnI GATC 7 cut(s) 96, 319, 639, 665, 750, 801, 830
DpnII GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 773, 819
EcoRI GAATTC 1 cut(s) 775
FaeI CATG 2 cut(s) 325, 452
FaiI YATR 7 cut(s) 119, 233, 284, 323, 450, 758, 865
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 1 cut(s) 506
FatI CATG 2 cut(s) 321, 448
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 3 cut(s) 94, 637, 748
Fnu4HI GCNGC 8 cut(s) 5, 296, 381, 394, 540, 543, 546, 691
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 8 cut(s) 5, 296, 381, 394, 540, 543, 546, 691
FspBI CTAG 2 cut(s) 348, 857
GluI GCNGC 8 cut(s) 5, 296, 381, 394, 540, 543, 546, 691
HaeIII GGCC 1 cut(s) 582
Hin1II CATG 2 cut(s) 325, 452
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 4 cut(s) 313, 416, 653, 839
Hpy188I TCNGA 3 cut(s) 469, 838, 844
Hpy188III TCNNGA 3 cut(s) 98, 513, 791
HpyAV CCTTC 2 cut(s) 170, 514
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 4 cut(s) 4, 380, 545, 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 301, 545, 554, 716
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 2 cut(s) 325, 452
Ksp22I TGATCA 3 cut(s) 94, 637, 748
Kzo9I GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
LmnI GCTCC 4 cut(s) 70, 461, 523, 698
LpnPI CCDG 6 cut(s) 224, 420, 636, 642, 776, 790
Lsp1109I GCAGC 8 cut(s) 16, 307, 392, 405, 526, 529, 557, 677
LweI GCATC 3 cut(s) 367, 473, 740
MaeI CTAG 2 cut(s) 348, 857
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 3 cut(s) 31, 365, 413
MalI GATC 7 cut(s) 96, 319, 639, 665, 750, 801, 830
MbiI CCGCTC 1 cut(s) 188
MboI GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
MboII GAAGA 8 cut(s) 5, 185, 251, 337, 343, 350, 726, 754
MluCI AATT 8 cut(s) 87, 120, 596, 680, 720, 753, 775, 823
MlyI GAGTC 4 cut(s) 307, 410, 647, 833
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 6 cut(s) 46, 261, 285, 344, 442, 715
MseI TTAA 3 cut(s) 129, 486, 644
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 557
MwoI GCNNNNNNNGC 4 cut(s) 301, 545, 554, 716
NdeII GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
NlaIII CATG 2 cut(s) 325, 452
NmeAIII GCCGAG 1 cut(s) 695
NmuCI GTSAC 1 cut(s) 413
PkrI GCNGC 8 cut(s) 6, 297, 382, 395, 541, 544, 547, 692
PleI GAGTC 4 cut(s) 307, 410, 647, 833
PpsI GAGTC 4 cut(s) 307, 410, 647, 833
Psp1406I AACGTT 1 cut(s) 422
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 842
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 256, 627
RsaNI GTAC 2 cut(s) 255, 626
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 3 cut(s) 129, 486, 644
SatI GCNGC 8 cut(s) 5, 296, 381, 394, 540, 543, 546, 691
Sau3AI GATC 7 cut(s) 94, 317, 637, 663, 748, 799, 828
ScaI AGTACT 1 cut(s) 256
SchI GAGTC 4 cut(s) 307, 410, 647, 833
SfaNI GCATC 3 cut(s) 367, 473, 740
SfcI CTRYAG 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 8 cut(s) 87, 120, 596, 680, 720, 753, 775, 823
SsiI CCGC 1 cut(s) 186
SspMI CTAG 2 cut(s) 348, 857
TaiI ACGT 1 cut(s) 425
TaqI TCGA 3 cut(s) 16, 154, 316
TasI AATT 8 cut(s) 87, 120, 596, 680, 720, 753, 775, 823
TatI WGTACW 1 cut(s) 254
Tru1I TTAA 3 cut(s) 129, 486, 644
Tru9I TTAA 3 cut(s) 129, 486, 644
TscAI CASTG 2 cut(s) 311, 809
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 8 cut(s) 4, 295, 380, 393, 539, 542, 545, 690
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 6 cut(s) 251, 338, 344, 533, 726, 773
TspRI CASTG 2 cut(s) 311, 809
XapI RAATTY 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 2 cut(s) 348, 857
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.