RLG00000012668

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007020
Physical Location & Seq
Forward (+)
21077723 .. 21081366
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012668

Sequence Viewer

Length: 939 bp
ATGGTAATGCAAATGTATGGGGTTCTATCAAGTTTTCACATGGAGATTGATGCCGTGTGCTTGACTATGCTGGACTTGAAGTTTCTTCGATGGCTTTCTAAAGTTACACAAGGACAAGCAAGAGAGGAGACTTCTGCTCCTACCAACAAGAAAAAAGAAATTAGTGATCAAGAAGCTAAACAGAACTACATAGTTGTTTTTAAGAGTGGGGGTGTTAGTGTCTACCGAAAAACAAAAGGATTTGAAGAAAGCAAACTCGCTAGTAAGAAGTTCAAGCCATTTGCCTTTCTGTGTAGAAAGGATATAGGACAGGCTTGCTTTTATAGTACTCTTCATTTGAGGAGACTTGATAGCATAAATAGGAGGCAGCAAAAGCAGTGTTGGACTCGATCCATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATACAGCTAATGTAGGCAGCAAGGTTTTACCAGTAAGTGACTCGACGTTATCAACCTCTACTAACAAAAACCATGACCAATGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCGTGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCTGCCTACTCGGCAATTTCAGTAGCATCTTCATTGAAGAATGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTTCAGGACTCGGATCACTGGCAACCCAAGAATGGGAATTGGATCACCTCAGACTCAGACTTTGTTGTGCTAGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

35.32

Weight (kDa)

9.61

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AclWI GGATC 3 cut(s) 384, 879, 908
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 1 cut(s) 845
AfaI GTAC 2 cut(s) 328, 699
AfiI CCNNNNNNNGG 2 cut(s) 890, 891
AgsI TTSAA 7 cut(s) 79, 245, 274, 814, 839, 847, 852
AluBI AGCT 8 cut(s) 176, 455, 598, 629, 741, 762, 859, 934
AluI AGCT 8 cut(s) 176, 455, 598, 629, 741, 762, 859, 934
Alw26I GTCTC 2 cut(s) 122, 337
AlwI GGATC 3 cut(s) 384, 879, 908
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 6 cut(s) 367, 465, 611, 614, 617, 762
ApoI RAATTY 1 cut(s) 847
ArsI GACNNNNNNTTYG 2 cut(s) 902, 934
AsuHPI GGTGA 1 cut(s) 895
BbvI GCAGC 6 cut(s) 379, 477, 598, 601, 629, 749
BccI CCATC 3 cut(s) 84, 600, 741
BceAI ACGGC 1 cut(s) 38
BciVI GTATCC 1 cut(s) 442
BclI TGATCA 3 cut(s) 166, 709, 820
BcoDI GTCTC 2 cut(s) 122, 337
BfaI CTAG 3 cut(s) 261, 420, 929
BfmI CTRYAG 1 cut(s) 615
BfuI GTATCC 1 cut(s) 442
BglI GCCNNNNNGGC 1 cut(s) 788
BisI GCNGC 6 cut(s) 368, 466, 612, 615, 618, 763
BlsI GCNGC 6 cut(s) 369, 467, 613, 616, 619, 764
BmcAI AGTACT 1 cut(s) 328
BmsI GCATC 3 cut(s) 40, 545, 812
BsaBI GATNNNNATC 1 cut(s) 708
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 890, 891
Bse1I ACTGG 3 cut(s) 479, 695, 881
Bse3DI GCAATG 1 cut(s) 727
Bse8I GATNNNNATC 1 cut(s) 708
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 890, 891
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 2 cut(s) 921, 927
BseNI ACTGG 3 cut(s) 479, 695, 881
BseRI GAGGAG 2 cut(s) 140, 355
BseXI GCAGC 6 cut(s) 379, 477, 598, 601, 629, 749
BshFI GGCC 1 cut(s) 654
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 2 cut(s) 890, 891
BsmAI GTCTC 2 cut(s) 122, 337
BsmFI GGGAC 1 cut(s) 578
BsnI GGCC 1 cut(s) 654
Bsp143I GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 2 cut(s) 920, 926
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 3 cut(s) 384, 879, 908
BsrDI GCAATG 1 cut(s) 727
BsrI ACTGG 3 cut(s) 479, 695, 881
BssMI GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 907, 913
BstKTI GATC 7 cut(s) 169, 392, 712, 738, 823, 874, 903
BstMAI GTCTC 2 cut(s) 122, 337
BstMBI GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
BstMWI GCNNNNNNNGC 4 cut(s) 373, 617, 626, 788
BstSFI CTRYAG 1 cut(s) 615
BstV1I GCAGC 6 cut(s) 379, 477, 598, 601, 629, 749
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 1 cut(s) 654
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 383, 874
Cac8I GCNNGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 327, 698
CviAII CATG 3 cut(s) 40, 394, 521
CviQI GTAC 2 cut(s) 327, 698
DdeI CTNAG 2 cut(s) 907, 913
DpnI GATC 7 cut(s) 168, 391, 711, 737, 822, 873, 902
DpnII GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 847
FaeI CATG 3 cut(s) 43, 397, 524
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 1 cut(s) 578
FatI CATG 3 cut(s) 39, 393, 520
FbaI TGATCA 3 cut(s) 166, 709, 820
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 6 cut(s) 368, 466, 612, 615, 618, 763
Fsp4HI GCNGC 6 cut(s) 368, 466, 612, 615, 618, 763
FspBI CTAG 3 cut(s) 261, 420, 929
GluI GCNGC 6 cut(s) 368, 466, 612, 615, 618, 763
HaeIII GGCC 1 cut(s) 654
Hin1II CATG 3 cut(s) 43, 397, 524
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 5 cut(s) 385, 488, 725, 866, 911
HphI GGTGA 1 cut(s) 895
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 541, 871, 910, 916
Hpy188III TCNNGA 3 cut(s) 170, 585, 863
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 3 cut(s) 10, 617, 667
HpyF10VI GCNNNNNNNGC 4 cut(s) 373, 617, 626, 788
HpyF3I CTNAG 2 cut(s) 907, 913
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 3 cut(s) 43, 397, 524
Ksp22I TGATCA 3 cut(s) 166, 709, 820
Kzo9I GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
LmnI GCTCC 4 cut(s) 142, 533, 595, 770
LpnPI CCDG 7 cut(s) 56, 296, 492, 708, 714, 848, 862
Lsp1109I GCAGC 6 cut(s) 379, 477, 598, 601, 629, 749
LweI GCATC 3 cut(s) 40, 545, 812
MaeI CTAG 3 cut(s) 261, 420, 929
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 3 cut(s) 103, 437, 485
MalI GATC 7 cut(s) 168, 391, 711, 737, 822, 873, 902
MboI GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
MboII GAAGA 8 cut(s) 77, 257, 323, 409, 415, 422, 798, 826
MluCI AATT 7 cut(s) 159, 668, 752, 792, 825, 847, 895
MlyI GAGTC 5 cut(s) 379, 482, 719, 860, 905
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 7 cut(s) 118, 333, 357, 416, 514, 787, 916
MseI TTAA 3 cut(s) 201, 558, 716
MslI CAYNNNNRTG 1 cut(s) 398
MspA1I CMGCKG 1 cut(s) 629
MwoI GCNNNNNNNGC 4 cut(s) 373, 617, 626, 788
NdeII GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
NlaIII CATG 3 cut(s) 43, 397, 524
NmeAIII GCCGAG 1 cut(s) 767
NmuCI GTSAC 1 cut(s) 485
PkrI GCNGC 6 cut(s) 369, 467, 613, 616, 619, 764
PleI GAGTC 5 cut(s) 379, 482, 719, 860, 905
PpsI GAGTC 5 cut(s) 379, 482, 719, 860, 905
PstI CTGCAG 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 328, 699
RsaNI GTAC 2 cut(s) 327, 698
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 3 cut(s) 201, 558, 716
SatI GCNGC 6 cut(s) 368, 466, 612, 615, 618, 763
Sau3AI GATC 7 cut(s) 166, 389, 709, 735, 820, 871, 900
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 5 cut(s) 379, 482, 719, 860, 905
SfaNI GCATC 3 cut(s) 40, 545, 812
SfcI CTRYAG 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 7 cut(s) 159, 668, 752, 792, 825, 847, 895
SspMI CTAG 3 cut(s) 261, 420, 929
TaiI ACGT 1 cut(s) 497
TaqI TCGA 3 cut(s) 88, 388, 491
TasI AATT 7 cut(s) 159, 668, 752, 792, 825, 847, 895
TatI WGTACW 1 cut(s) 326
Tru1I TTAA 3 cut(s) 201, 558, 716
Tru9I TTAA 3 cut(s) 201, 558, 716
TscAI CASTG 2 cut(s) 383, 881
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 6 cut(s) 367, 465, 611, 614, 617, 762
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 6 cut(s) 323, 410, 416, 605, 798, 845
TspRI CASTG 2 cut(s) 383, 881
XapI RAATTY 1 cut(s) 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 261, 420, 929
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.