Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007020

Physical Location & Seq

Genomic Coordinates Forward (+)

34825434 .. 34826719

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG323000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATGCAGCTAATGTAGGCAGCAAGATTTTACCAGTAAGTGACTCGACGTTATCAACCTCTACTAACAAAAACCATGACCAACGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCATGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCTGCCTACTCGGCAATTTCTGTAGCATCTTCATTGAAGAATGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTTCAAGACTCAGATGACTGGCAACCCAAGAATGGGAATTGGATCACTTCAGACTCTGACTGTACGTCATACTTCTTAATCACTATATATCCTTCTTCTTTTTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.26

Weight (kDa)

9.24

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24750 AT3G24750 AT3G24750
fragaria_vesca	FvH4_2g19360
malus_domestica	MD05G1178500.v1.1 MD10G1166700.v1.1
prunus_persica	Prupe.8G205000_v2.0.a1
pyrus_communis	pycom05g16460 pycom10g14370
rosa_chinensis	RchiOBHm_Chr6g0285151
rosa_laevigata	RLG00000012668
rosa_multiflora	Rmu_sc0002535.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183600
rosa_rugosa	Rorug06G0172200 Rorug06G0172300
rosa_samantha	Rh3CG323000 Rh6AG282700 Rh6BG283500 Rh6CG285400 Rh6DG278500
rosa_wichuraiana	Rw0G004220 Rw1G022450 Rw5G016520 Rw6G024310 Rw6G024370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	306, 529
AfiI	CCNNNNNNNGG	2 cut(s)	497, 498
AgsI	TTSAA	5 cut(s)	421, 446, 454, 459, 470
AhdI	GACNNNNNGTC	1 cut(s)	529
AluBI	AGCT	6 cut(s)	62, 205, 236, 348, 369, 466
AluI	AGCT	6 cut(s)	62, 205, 236, 348, 369, 466
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	6 cut(s)	59, 72, 218, 221, 224, 369
ApoI	RAATTY	1 cut(s)	454
BbvI	GCAGC	6 cut(s)	71, 84, 205, 208, 236, 356
BccI	CCATC	2 cut(s)	207, 348
BclI	TGATCA	2 cut(s)	316, 427
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	2 cut(s)	222, 405
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	6 cut(s)	60, 73, 219, 222, 225, 370
BlsI	GCNGC	6 cut(s)	61, 74, 220, 223, 226, 371
BmeRI	GACNNNNNGTC	1 cut(s)	529
BmsI	GCATC	3 cut(s)	46, 152, 419
BsaBI	GATNNNNATC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 498
Bse1I	ACTGG	3 cut(s)	86, 302, 488
Bse3DI	GCAATG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	315
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	497, 498
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	86, 302, 488
BseXI	GCAGC	6 cut(s)	71, 84, 205, 208, 236, 356
BshFI	GGCC	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	497, 498
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	316, 342, 427, 507
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	3 cut(s)	86, 302, 488
BssMI	GATC	4 cut(s)	316, 342, 427, 507
Bst4CI	ACNGT	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	4 cut(s)	319, 345, 430, 510
BstMBI	GATC	4 cut(s)	316, 342, 427, 507
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 233, 395
BstSFI	CTRYAG	2 cut(s)	222, 405
BstV1I	GCAGC	6 cut(s)	71, 84, 205, 208, 236, 356
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	305, 528
CviAII	CATG	2 cut(s)	128, 287
CviJI	RGCY	8 cut(s)	62, 205, 218, 236, 261, 348, 369, 466
CviKI_1	RGCY	8 cut(s)	62, 205, 218, 236, 261, 348, 369, 466
CviQI	GTAC	2 cut(s)	305, 528
DdeI	CTNAG	1 cut(s)	475
DpnI	GATC	4 cut(s)	318, 344, 429, 509
DpnII	GATC	4 cut(s)	316, 342, 427, 507
DriI	GACNNNNNGTC	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	454
FaeI	CATG	2 cut(s)	131, 290
FaiI	YATR	6 cut(s)	129, 288, 437, 535, 551, 553
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	127, 286
FbaI	TGATCA	2 cut(s)	316, 427
Fnu4HI	GCNGC	6 cut(s)	60, 73, 219, 222, 225, 370
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	6 cut(s)	60, 73, 219, 222, 225, 370
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	6 cut(s)	60, 73, 219, 222, 225, 370
HaeIII	GGCC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	131, 290
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	4 cut(s)	95, 332, 473, 518
Hpy188I	TCNGA	4 cut(s)	148, 478, 517, 523
Hpy188III	TCNNGA	2 cut(s)	192, 470
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	193, 567
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	3 cut(s)	101, 136, 530
HpyCH4V	TGCA	3 cut(s)	59, 224, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 233, 395
HpyF3I	CTNAG	1 cut(s)	475
HpySE526I	ACGT	3 cut(s)	101, 136, 530
Hsp92II	CATG	2 cut(s)	131, 290
Ksp22I	TGATCA	2 cut(s)	316, 427
Kzo9I	GATC	4 cut(s)	316, 342, 427, 507
LmnI	GCTCC	3 cut(s)	140, 202, 377
LpnPI	CCDG	4 cut(s)	99, 315, 321, 469
Lsp1109I	GCAGC	6 cut(s)	71, 84, 205, 208, 236, 356
LweI	GCATC	3 cut(s)	46, 152, 419
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	3 cut(s)	101, 136, 530
MaeIII	GTNAC	2 cut(s)	44, 92
MalI	GATC	4 cut(s)	318, 344, 429, 509
MboI	GATC	4 cut(s)	316, 342, 427, 507
MboII	GAAGA	6 cut(s)	16, 22, 29, 405, 433, 552
MluCI	AATT	6 cut(s)	275, 359, 399, 432, 454, 502
MlyI	GAGTC	4 cut(s)	89, 326, 467, 512
MnlI	CCTC	3 cut(s)	23, 121, 394
MseI	TTAA	4 cut(s)	165, 323, 542, 574
MspA1I	CMGCKG	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	224, 233, 395
NdeII	GATC	4 cut(s)	316, 342, 427, 507
NlaIII	CATG	2 cut(s)	131, 290
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	61, 74, 220, 223, 226, 371
PleI	GAGTC	4 cut(s)	89, 326, 467, 512
PpsI	GAGTC	4 cut(s)	89, 326, 467, 512
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	306, 529
RsaNI	GTAC	2 cut(s)	305, 528
SaqAI	TTAA	4 cut(s)	165, 323, 542, 574
SatI	GCNGC	6 cut(s)	60, 73, 219, 222, 225, 370
Sau3AI	GATC	4 cut(s)	316, 342, 427, 507
SchI	GAGTC	4 cut(s)	89, 326, 467, 512
SfaNI	GCATC	3 cut(s)	46, 152, 419
SfcI	CTRYAG	2 cut(s)	222, 405
Sse9I	AATT	6 cut(s)	275, 359, 399, 432, 454, 502
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	3 cut(s)	104, 139, 533
TaqI	TCGA	1 cut(s)	98
TasI	AATT	6 cut(s)	275, 359, 399, 432, 454, 502
Tru1I	TTAA	4 cut(s)	165, 323, 542, 574
Tru9I	TTAA	4 cut(s)	165, 323, 542, 574
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	6 cut(s)	59, 72, 218, 221, 224, 369
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	5 cut(s)	17, 23, 212, 405, 452
XapI	RAATTY	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.