Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003079

Physical Location & Seq

Genomic Coordinates Forward (+)

9052869 .. 9054591

Gene Structure 1723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCCTGCTCCTTATAAGCAACCAAACTCACCTAAGAGAACAACAGGAGAAGTGGTGGCTAAGAACGCAAACGGACCATCAAACAATATGGGGGCACGTATTTTCACGTTCCGTGAGCTAGCCACCGCGACAAAGAATTTTAGACAAGAGTGCCTCATTGGTGAAGGTGGGTTCGGGAGGGTTTACAAAGGAAAGCTTGAAAATCCAGCTCAGGTCGTGGCAGTGAAACAACTTGATAGGAATGGATTACAAGGACAAAGAGAGTTCTTGGTCGAGGTCTTAATGCTTAGTCTTCTACATCATAGGAATCTTGTGAATCTTATCGGTTATTGCGCTGATGGAGACCAAAGACTTCTTGTTTACGAGTATATGCCTCTTGGATCTCTAGAAGATCATCTCCTCGATCTTGAACCGGGACAAAAACCACTAGACTGGAACACTCGTATTAAGATTGCTTTAGGAGCAGCAAAAGGAATTGAGTATCTCCATGATGAGGCTGATCCTCCAGTGATTTACCGAGATCTTAAATCGTCAAATATATTACTTGACCCAGAATACGTTGCGAAATTATCGGATTTCGGTTTAGCAAAGCTAGGTCCTGTTGGAGACACACTACATGTGTCTTCCCGAGTTATGGGAACTTATGGTTATTGTGCTCCTGAATATCAAAGAACTGGCTATCTAACAAATAAATCAGATGTCTACAGCTTTGGAGTTGTGTTGTTGGAACTTATATCCGGAAGACGAGTCATCGACACAATGAGACCTAGTCATGAACAAAATCTCGTTACTTGGGCACTACCGATTTTTAGAGATCCGACTAGATATTGGCAGCTAGCTGATCCATTGCTTCGAGGCGACTATCCGGAAAAGAGTTTGAACCAAGCTATAGCTGTAGCGGCAATGTGCCTGCATGAAGAACCAACGGTTAGACCACTAATGAGTGACGTTATTACAGCCTTGAGCTTTCTTGGTGCATCCTCAAATTCCTCCAATACCGGCTCTAACCATTTGCAACAAAATCGATCCAACAAATATCAGGATGCAGTTCAGTGGGACTCAAGTCCTAGATATGCTAATTCGCAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

363

Amino Acids

40.52

Weight (kDa)

6.72

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	49 - 317	2.9e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 319	6.7e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07070 AT3G24790 AT3G24790 AT4G13190 AT4G13190 AT4G13190 AT4G13190 AT4G13190
fragaria_vesca	FvH4_2g19200 FvH4_6g01120
malus_domestica	MD04G1236200.v1.1 MD05G1176700.v1.1 MD10G1165400.v1.1 MD12G1255300.v1.1
prunus_persica	Prupe.6G356200_v2.0.a1 Prupe.8G203800_v2.0.a1
pyrus_communis	pycom05g16290 pycom12g23400
rosa_chinensis	RchiOBHm_Chr3g0448651 RchiOBHm_Chr6g0284981
rosa_laevigata	RLG00000012693 RLG00000025882
rosa_multiflora	Rmu_sc0003116.1_g000035
rosa_roxburghii	Rroxscaffold_6G00426920 Rroxscaffold_7G00183870 Rroxscaffold_7G00184150
rosa_rugosa	Rorug02G0615000
rosa_samantha	Rh3AG013800 Rh3BG013600 Rh3CG012700 Rh3DG014400 Rh6AG281200 Rh6BG281900 Rh6CG283600 Rh6DG276700
rosa_wichuraiana	Rw3G001020 Rw6G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	2 cut(s)	737, 865
AciI	CCGC	2 cut(s)	126, 899
AclWI	GGATC	5 cut(s)	388, 494, 809, 836, 1020
AcsI	RAATTY	2 cut(s)	136, 985
AfiI	CCNNNNNNNGG	2 cut(s)	493, 634
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	200, 410, 880
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	3 cut(s)	336, 600, 757
AlwI	GGATC	5 cut(s)	388, 494, 809, 836, 1020
Ama87I	CYCGRG	1 cut(s)	627
Aor13HI	TCCGGA	2 cut(s)	737, 865
ApeKI	GCWGC	2 cut(s)	464, 832
ApoI	RAATTY	2 cut(s)	136, 985
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	74, 596
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	21, 173
AsuNHI	GCTAGC	2 cut(s)	118, 835
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	2 cut(s)	74, 596
BaeGI	GKGCMC	2 cut(s)	97, 799
BbsI	GAAGAC	3 cut(s)	284, 615, 748
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	2 cut(s)	476, 844
BccI	CCATC	2 cut(s)	85, 332
BcgI	CGANNNNNNTGC	2 cut(s)	1004, 1038
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	3 cut(s)	336, 600, 757
BfaI	CTAG	8 cut(s)	119, 386, 428, 593, 768, 822, 836, 1068
BfmI	CTRYAG	3 cut(s)	703, 888, 894
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	3 cut(s)	465, 833, 900
BlsI	GCNGC	3 cut(s)	466, 834, 901
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	2 cut(s)	74, 596
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	2 cut(s)	74, 596
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	986, 1033
BmtI	GCTAGC	2 cut(s)	122, 839
BoxI	GACNNNNGTC	1 cut(s)	1062
BpiI	GAAGAC	3 cut(s)	284, 615, 748
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	2 cut(s)	982, 1045
BpuMI	CCSGG	1 cut(s)	414
Bsa29I	ATCGAT	1 cut(s)	1024
BsaAI	YACGTR	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	336, 757
BsaWI	WCCGGW	2 cut(s)	737, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 634
Bse118I	RCCGGY	1 cut(s)	998
Bse1I	ACTGG	3 cut(s)	437, 506, 679
Bse3DI	GCAATG	2 cut(s)	845, 909
BseAI	TCCGGA	2 cut(s)	737, 865
BseCI	ATCGAT	1 cut(s)	1024
BseGI	GGATG	2 cut(s)	977, 1048
BseLI	CCNNNNNNNGG	2 cut(s)	493, 634
BseMI	GCAATG	2 cut(s)	845, 909
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	3 cut(s)	437, 506, 679
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	2 cut(s)	97, 799
BseXI	GCAGC	2 cut(s)	476, 844
Bsh1236I	CGCG	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	1024
BsiHKAI	GWGCWC	1 cut(s)	658
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	4 cut(s)	413, 738, 866, 999
BslFI	GGGAC	2 cut(s)	429, 1070
BslI	CCNNNNNNNGG	2 cut(s)	493, 634
BsmAI	GTCTC	3 cut(s)	336, 600, 757
BsmFI	GGGAC	2 cut(s)	429, 1070
Bso31I	GGTCTC	2 cut(s)	336, 757
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	3 cut(s)	97, 658, 799
Bsp13I	TCCGGA	2 cut(s)	737, 865
Bsp143I	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
BspACI	CCGC	2 cut(s)	126, 899
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	1024
BspEI	TCCGGA	2 cut(s)	737, 865
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	772
BspOI	GCTAGC	2 cut(s)	122, 839
BspPI	GGATC	5 cut(s)	388, 494, 809, 836, 1020
BspTNI	GGTCTC	2 cut(s)	336, 757
BsrDI	GCAATG	2 cut(s)	845, 909
BsrFI	RCCGGY	1 cut(s)	998
BsrI	ACTGG	3 cut(s)	437, 506, 679
BssAI	RCCGGY	1 cut(s)	998
BssMI	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
Bst4CI	ACNGT	1 cut(s)	928
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	6, 120, 837, 911
BstDEI	CTNAG	4 cut(s)	33, 60, 210, 287
BstF5I	GGATG	2 cut(s)	977, 1048
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	8 cut(s)	383, 394, 406, 502, 523, 817, 844, 1028
BstMAI	GTCTC	3 cut(s)	336, 600, 757
BstMBI	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 461, 899
BstNSI	RCATGY	1 cut(s)	620
BstPAI	GACNNNNGTC	1 cut(s)	1062
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	3 cut(s)	703, 888, 894
BstSLI	GKGCMC	2 cut(s)	97, 799
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	476, 844
BstV2I	GAAGAC	3 cut(s)	284, 615, 748
BstX2I	RGATCY	3 cut(s)	380, 520, 814
BstXI	CCANNNNNNTGG	1 cut(s)	432
BstYI	RGATCY	3 cut(s)	380, 520, 814
Bsu15I	ATCGAT	1 cut(s)	1024
BsuTUI	ATCGAT	1 cut(s)	1024
BtsCI	GGATG	2 cut(s)	977, 1048
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	228, 513, 1058
Cac8I	GCNNGC	4 cut(s)	6, 120, 837, 911
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	998
Cfr13I	GGNCC	2 cut(s)	74, 596
ClaI	ATCGAT	1 cut(s)	1024
CviAII	CATG	4 cut(s)	488, 617, 773, 914
DdeI	CTNAG	4 cut(s)	33, 60, 210, 287
DpnI	GATC	8 cut(s)	382, 393, 405, 501, 522, 816, 843, 1027
DpnII	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
Eco31I	GGTCTC	2 cut(s)	336, 757
Eco47I	GGWCC	2 cut(s)	74, 596
Eco88I	CYCGRG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	596
FaeI	CATG	4 cut(s)	491, 620, 776, 917
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	2 cut(s)	429, 1070
FatI	CATG	4 cut(s)	487, 616, 772, 913
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	465, 833, 900
FokI	GGATG	2 cut(s)	964, 1055
Fsp4HI	GCNGC	3 cut(s)	465, 833, 900
FspBI	CTAG	8 cut(s)	119, 386, 428, 593, 768, 822, 836, 1068
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	465, 833, 900
GsuI	CTGGAG	1 cut(s)	489
HapII	CCGG	4 cut(s)	413, 738, 866, 999
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	491, 620, 776, 917
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	307, 316, 747, 1058
HpaII	CCGG	4 cut(s)	413, 738, 866, 999
HphI	GGTGA	2 cut(s)	21, 173
Hpy166II	GTNNAC	3 cut(s)	184, 361, 703
Hpy188I	TCNGA	3 cut(s)	574, 697, 819
Hpy188III	TCNNGA	9 cut(s)	175, 386, 407, 627, 659, 738, 773, 866, 1040
Hpy8I	GTNNAC	3 cut(s)	184, 361, 703
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4IV	ACGT	4 cut(s)	97, 107, 558, 948
HpyCH4V	TGCA	4 cut(s)	913, 977, 1015, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 461, 899
HpyF3I	CTNAG	4 cut(s)	33, 60, 210, 287
HpySE526I	ACGT	4 cut(s)	97, 107, 558, 948
Hsp92II	CATG	4 cut(s)	491, 620, 776, 917
HspAI	GCGC	1 cut(s)	333
Kpn2I	TCCGGA	2 cut(s)	737, 865
Kzo9I	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
LmnI	GCTCC	3 cut(s)	13, 461, 661
Lsp1109I	GCAGC	2 cut(s)	476, 844
LweI	GCATC	2 cut(s)	986, 1033
MaeI	CTAG	8 cut(s)	119, 386, 428, 593, 768, 822, 836, 1068
MaeII	ACGT	4 cut(s)	97, 107, 558, 948
MaeIII	GTNAC	2 cut(s)	787, 944
MalI	GATC	8 cut(s)	382, 393, 405, 501, 522, 816, 843, 1027
MboI	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
MboII	GAAGA	5 cut(s)	284, 401, 615, 753, 929
MflI	RGATCY	3 cut(s)	380, 520, 814
MhlI	GDGCHC	3 cut(s)	97, 658, 799
MluCI	AATT	5 cut(s)	136, 474, 566, 985, 1078
MlyI	GAGTC	2 cut(s)	756, 1052
MmeI	TCCRAC	4 cut(s)	583, 705, 842, 1053
MroI	TCCGGA	2 cut(s)	737, 865
MseI	TTAA	3 cut(s)	281, 447, 525
MspI	CCGG	4 cut(s)	413, 738, 866, 999
MspR9I	CCNGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	65, 461, 899
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
NheI	GCTAGC	2 cut(s)	118, 835
NlaIII	CATG	4 cut(s)	491, 620, 776, 917
NmuCI	GTSAC	1 cut(s)	944
NspI	RCATGY	1 cut(s)	620
PagI	TCATGA	1 cut(s)	772
PciI	ACATGT	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	307, 316
PflFI	GACNNNGTC	1 cut(s)	768
PkrI	GCNGC	3 cut(s)	466, 834, 901
PleI	GAGTC	2 cut(s)	755, 1052
PpsI	GAGTC	2 cut(s)	755, 1052
Ppu21I	YACGTR	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	596
PscI	ACATGT	1 cut(s)	616
PshAI	GACNNNNGTC	1 cut(s)	1062
PsiI	TTATAA	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	596
PspPI	GGNCC	2 cut(s)	74, 596
PspPPI	RGGWCCY	1 cut(s)	596
PsuI	RGATCY	3 cut(s)	380, 520, 814
PsyI	GACNNNGTC	1 cut(s)	768
SaqAI	TTAA	3 cut(s)	281, 447, 525
SatI	GCNGC	3 cut(s)	465, 833, 900
Sau3AI	GATC	8 cut(s)	380, 391, 403, 499, 520, 814, 841, 1025
Sau96I	GGNCC	2 cut(s)	74, 596
SchI	GAGTC	2 cut(s)	756, 1052
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	3 cut(s)	97, 658, 799
SfaNI	GCATC	2 cut(s)	986, 1033
SfcI	CTRYAG	3 cut(s)	703, 888, 894
SinI	GGWCC	2 cut(s)	74, 596
SmlI	CTYRAG	2 cut(s)	961, 1060
SmoI	CTYRAG	2 cut(s)	961, 1060
Sse9I	AATT	5 cut(s)	136, 474, 566, 985, 1078
SsiI	CCGC	2 cut(s)	126, 899
SspMI	CTAG	8 cut(s)	119, 386, 428, 593, 768, 822, 836, 1068
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	928
TaiI	ACGT	4 cut(s)	100, 110, 561, 951
TaqI	TCGA	5 cut(s)	273, 402, 753, 853, 1024
TasI	AATT	5 cut(s)	136, 474, 566, 985, 1078
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	2 cut(s)	307, 316
Tru1I	TTAA	3 cut(s)	281, 447, 525
Tru9I	TTAA	3 cut(s)	281, 447, 525
TscAI	CASTG	3 cut(s)	228, 513, 1058
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	2 cut(s)	464, 832
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	2 cut(s)	789, 930
TspGWI	ACGGA	2 cut(s)	87, 101
TspRI	CASTG	3 cut(s)	228, 513, 1058
Tth111I	GACNNNGTC	1 cut(s)	768
VpaK11BI	GGWCC	2 cut(s)	74, 596
XapI	RAATTY	2 cut(s)	136, 985
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	8 cut(s)	119, 386, 428, 593, 768, 822, 836, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.