Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003079

Physical Location & Seq

Genomic Coordinates Forward (+)

47569427 .. 47571227

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGACATTGGATTGGTACACGCGGATTAAAATAGCTTATGGTGCTGCTCTGGGATTGGAGTACTTGCACGAGAAGGCCAATCCACCCATTATATATAGGGACTTCAAATCTTCAAATATCTTGTTAGATGAAGAATTCAATCCAAAGCTCTCGGATGTTGGACTTGCCAAGCTTGGCCAAGCCGGAGATAAGATGCATGGACCATCAAGGCTGATGGGTGCCTATGGTTTCTGTGCTCCAGAGTACTCGAGAACTGGTGAAGTCTCAATGAAGTCGGATGTGTATAGTTTCGGAGTTATTCTACTGGAGCTAATTACTGGAAGAAGAGCCATTGACACTACAAGAGCAAATGATGAGCAAAATCTAGTTGCTTGGGCACAACCCTTATTCAAGGACCCAAAAAAGTTTCCTGAAATGGCAGATAGTCGTCTTAACAAGCAATTCCCGGAGAAAGATCTAAATCAGGCTGTTGCAATAGCAGCCATGTGTCTGCAAGATGAGGCATCAGTCCGGCCCTTCATGAGTGACGTAGTAACGACTTTAAGTTTTCTTGACACTAGTCCTGCTCCTGCTCCTGTTCCAGCTGATACAATCCCTAGTACTGAAAACCAGGATGATAACTCTGAATGTGGTTCTGATATTTCCGACGATGATGAGAGCAATGGGGAGGATTCAGATAATGGGATTATCAGAAGTTCAGACATTAACCACAGCCATGACAACTCAGACAAGGATGGTAATGGCCAAGACTTACGTCAACTAGGTGGTGTAGAATCCAAAGAATGGCATTCATTTGAACGAGACGTAGGCGCTTCTTCAGGTGACGAGAGAAGTAAAAGCAAGAGCAACAAGGGTGATCAAGATACTAGTTTAAGCCAAGATAAATTTGAAAGTGTTACTTCTAGAAGCAACAGTGAAGAATCGAACGGAGAAGGTGTTTCTCATAGCAACAATAGAGTACCACAAAAAGAAGAGAGTACTGTTAAAGTTGGCGGAATTAAGAGCGCAGAATTATCCGAAGTGGATCTTTCAGTCACTCCAGTCGTAGGGAACCTGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0038023 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0050789 GO:0050794 GO:0050896 GO:0050918 GO:0051286 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

38.63

Weight (kDa)

4.58

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	6 - 181	3.9e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 178	2.8e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07070 AT3G24790 AT3G24790 AT4G13190 AT4G13190 AT4G13190 AT4G13190 AT4G13190
fragaria_vesca	FvH4_2g19200 FvH4_6g01120
malus_domestica	MD04G1236200.v1.1 MD05G1176700.v1.1 MD10G1165400.v1.1 MD12G1255300.v1.1
prunus_persica	Prupe.6G356200_v2.0.a1 Prupe.8G203800_v2.0.a1
pyrus_communis	pycom05g16290 pycom12g23400
rosa_chinensis	RchiOBHm_Chr3g0448651 RchiOBHm_Chr6g0284981
rosa_laevigata	RLG00000012693 RLG00000025882
rosa_multiflora	Rmu_sc0003116.1_g000035
rosa_roxburghii	Rroxscaffold_6G00426920 Rroxscaffold_7G00183870 Rroxscaffold_7G00184150
rosa_rugosa	Rorug02G0615000
rosa_samantha	Rh3AG013800 Rh3BG013600 Rh3CG012700 Rh3DG014400 Rh6AG281200 Rh6BG281900 Rh6CG283600 Rh6DG276700
rosa_wichuraiana	Rw3G001020 Rw6G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	783
AccII	CGCG	1 cut(s)	22
AciI	CCGC	2 cut(s)	22, 993
AclWI	GGATC	1 cut(s)	1032
AcoI	YGGCCR	2 cut(s)	175, 742
AcsI	RAATTY	2 cut(s)	134, 884
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	6 cut(s)	17, 62, 245, 601, 960, 979
AfiI	CCNNNNNNNGG	2 cut(s)	783, 1046
AgsI	TTSAA	6 cut(s)	106, 114, 139, 391, 797, 890
AhlI	ACTAGT	2 cut(s)	557, 866
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	5 cut(s)	35, 148, 172, 310, 584
AluI	AGCT	5 cut(s)	35, 148, 172, 310, 584
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	268, 795
AlwI	GGATC	1 cut(s)	1032
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	4 cut(s)	75, 175, 512, 742
ApeKI	GCWGC	2 cut(s)	44, 479
ApoI	RAATTY	2 cut(s)	134, 884
AspLEI	GCGC	2 cut(s)	812, 1007
AspS9I	GGNCC	3 cut(s)	200, 394, 513
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	269, 833, 866
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	2 cut(s)	200, 394
BaeGI	GKGCMC	1 cut(s)	379
BalI	TGGCCA	2 cut(s)	177, 744
BanI	GGYRCC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	31, 491
BccI	CCATC	3 cut(s)	208, 211, 728
BciT130I	CCWGG	1 cut(s)	611
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	268, 795
BcuI	ACTAGT	2 cut(s)	557, 866
BfaI	CTAG	6 cut(s)	365, 558, 597, 761, 867, 903
BfoI	RGCGCY	1 cut(s)	813
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	2 cut(s)	45, 480
BlsI	GCNGC	2 cut(s)	46, 481
BmcAI	AGTACT	4 cut(s)	62, 245, 601, 979
Bme1390I	CCNGG	2 cut(s)	446, 611
Bme18I	GGWCC	2 cut(s)	200, 394
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	200, 394, 513
BmiI	GGNNCC	3 cut(s)	220, 396, 1052
BmrFI	CCNGG	2 cut(s)	446, 611
BmsI	GCATC	2 cut(s)	183, 512
BoxI	GACNNNNGTC	2 cut(s)	558, 753
BpmI	CTGGAG	3 cut(s)	222, 326, 1023
BpuMI	CCSGG	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	783, 1046
Bse1I	ACTGG	4 cut(s)	259, 309, 322, 1040
Bse3DI	GCAATG	1 cut(s)	667
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	611
BseGI	GGATG	4 cut(s)	160, 283, 619, 739
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	783, 1046
BseMI	GCAATG	1 cut(s)	667
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	4 cut(s)	259, 309, 322, 1040
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	31, 491
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	4 cut(s)	77, 177, 514, 744
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	183, 446, 511
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	783, 1046
BsmAI	GTCTC	2 cut(s)	268, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	4 cut(s)	77, 177, 514, 744
BsoBI	CYCGRG	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	238, 379
Bsp143I	GATC	3 cut(s)	454, 856, 1024
BspACI	CCGC	2 cut(s)	22, 993
BspANI	GGCC	4 cut(s)	77, 177, 514, 744
BspCNI	CTCAG	1 cut(s)	737
BspFNI	CGCG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	220, 396, 1052
BspPI	GGATC	1 cut(s)	1032
BspQI	GCTCTTC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	667
BsrI	ACTGG	4 cut(s)	259, 309, 322, 1040
BssMI	GATC	3 cut(s)	454, 856, 1024
BssSI	CACGAG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	2 cut(s)	914, 982
Bst6I	CTCTTC	2 cut(s)	319, 966
BstDEI	CTNAG	1 cut(s)	724
BstF5I	GGATG	4 cut(s)	160, 283, 619, 739
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	2 cut(s)	812, 1007
BstKTI	GATC	3 cut(s)	457, 859, 1027
BstMAI	GTCTC	2 cut(s)	268, 795
BstMBI	GATC	3 cut(s)	454, 856, 1024
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 479
BstNI	CCWGG	1 cut(s)	611
BstPAI	GACNNNNGTC	2 cut(s)	558, 753
BstSCI	CCNGG	2 cut(s)	444, 609
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	31, 491
BstX2I	RGATCY	2 cut(s)	454, 1024
BstYI	RGATCY	2 cut(s)	454, 1024
BsuRI	GGCC	4 cut(s)	77, 177, 514, 744
BtsCI	GGATG	4 cut(s)	160, 283, 619, 739
BtsIMutI	CAGTG	1 cut(s)	919
CciI	TCATGA	1 cut(s)	519
CfoI	GCGC	2 cut(s)	812, 1007
Cfr13I	GGNCC	3 cut(s)	200, 394, 513
Csp6I	GTAC	6 cut(s)	16, 61, 244, 600, 959, 978
CviAII	CATG	4 cut(s)	197, 484, 520, 716
CviQI	GTAC	6 cut(s)	16, 61, 244, 600, 959, 978
DdeI	CTNAG	1 cut(s)	724
DpnI	GATC	3 cut(s)	456, 858, 1026
DpnII	GATC	3 cut(s)	454, 856, 1024
EaeI	YGGCCR	2 cut(s)	175, 742
Eam1104I	CTCTTC	2 cut(s)	319, 966
EarI	CTCTTC	2 cut(s)	319, 966
EciI	GGCGGA	1 cut(s)	1008
Eco47I	GGWCC	2 cut(s)	200, 394
Eco57I	CTGAAG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	4 cut(s)	200, 487, 523, 719
FalI	AAGNNNNNCTT	4 cut(s)	883, 915, 1011, 1043
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	196, 483, 519, 715
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	2 cut(s)	45, 480
FokI	GGATG	4 cut(s)	167, 290, 626, 746
Fsp4HI	GCNGC	2 cut(s)	45, 480
FspBI	CTAG	6 cut(s)	365, 558, 597, 761, 867, 903
GlaI	GCGC	2 cut(s)	811, 1006
GluI	GCNGC	2 cut(s)	45, 480
GsuI	CTGGAG	3 cut(s)	222, 326, 1023
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	77, 177, 514, 744
HapII	CCGG	3 cut(s)	183, 446, 511
HhaI	GCGC	2 cut(s)	812, 1007
Hin1II	CATG	4 cut(s)	200, 487, 523, 719
Hin6I	GCGC	2 cut(s)	810, 1005
HinP1I	GCGC	2 cut(s)	810, 1005
HincII	GTYRAC	1 cut(s)	758
HindII	GTYRAC	1 cut(s)	758
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	4 cut(s)	671, 773, 920, 1057
HpaII	CCGG	3 cut(s)	183, 446, 511
HphI	GGTGA	3 cut(s)	269, 833, 866
Hpy166II	GTNNAC	2 cut(s)	18, 758
Hpy188III	TCNNGA	7 cut(s)	239, 249, 410, 520, 551, 860, 903
Hpy8I	GTNNAC	2 cut(s)	18, 758
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	3 cut(s)	67, 526, 926
HpyCH4III	ACNGT	2 cut(s)	914, 982
HpyCH4IV	ACGT	3 cut(s)	528, 754, 804
HpyCH4V	TGCA	4 cut(s)	67, 196, 473, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 479
HpyF3I	CTNAG	1 cut(s)	724
HpySE526I	ACGT	3 cut(s)	528, 754, 804
Hsp92II	CATG	4 cut(s)	200, 487, 523, 719
HspAI	GCGC	2 cut(s)	810, 1005
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	3 cut(s)	454, 856, 1024
LguI	GCTCTTC	1 cut(s)	319
LmnI	GCTCC	4 cut(s)	241, 307, 571, 577
Lsp1109I	GCAGC	2 cut(s)	31, 491
LweI	GCATC	2 cut(s)	183, 512
MaeI	CTAG	6 cut(s)	365, 558, 597, 761, 867, 903
MaeII	ACGT	3 cut(s)	528, 754, 804
MaeIII	GTNAC	5 cut(s)	524, 532, 821, 895, 1033
MalI	GATC	3 cut(s)	456, 858, 1026
MboI	GATC	3 cut(s)	454, 856, 1024
MboII	GAAGA	7 cut(s)	102, 143, 333, 336, 807, 929, 983
MflI	RGATCY	2 cut(s)	454, 1024
MhlI	GDGCHC	2 cut(s)	238, 379
MlsI	TGGCCA	2 cut(s)	177, 744
MluCI	AATT	6 cut(s)	134, 312, 440, 884, 996, 1010
MluNI	TGGCCA	2 cut(s)	177, 744
MmeI	TCCRAC	3 cut(s)	139, 255, 669
MnlI	CCTC	2 cut(s)	493, 661
Mox20I	TGGCCA	2 cut(s)	177, 744
Mph1103I	ATGCAT	1 cut(s)	198
MscI	TGGCCA	2 cut(s)	177, 744
MseI	TTAA	7 cut(s)	27, 432, 542, 705, 872, 984, 999
MslI	CAYNNNNRTG	1 cut(s)	714
Msp20I	TGGCCA	2 cut(s)	177, 744
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	3 cut(s)	183, 446, 511
MspR9I	CCNGG	2 cut(s)	446, 611
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	41, 479
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	3 cut(s)	454, 856, 1024
NlaIII	CATG	4 cut(s)	200, 487, 523, 719
NlaIV	GGNNCC	3 cut(s)	220, 396, 1052
NmuCI	GTSAC	3 cut(s)	524, 821, 1033
NsiI	ATGCAT	1 cut(s)	198
PaeR7I	CTCGAG	1 cut(s)	247
PagI	TCATGA	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	319
PctI	GAATGC	1 cut(s)	787
PfeI	GAWTC	4 cut(s)	671, 773, 920, 1057
PflMI	CCANNNNNTGG	1 cut(s)	783
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	46, 481
PpuMI	RGGWCCY	1 cut(s)	394
PshAI	GACNNNNGTC	2 cut(s)	558, 753
Psp5II	RGGWCCY	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	220, 396, 1052
PspPI	GGNCC	3 cut(s)	200, 394, 513
PspPPI	RGGWCCY	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	454, 1024
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	6 cut(s)	17, 62, 245, 601, 960, 979
RsaNI	GTAC	6 cut(s)	16, 61, 244, 600, 959, 978
RseI	CAYNNNNRTG	1 cut(s)	714
SapI	GCTCTTC	1 cut(s)	319
SaqAI	TTAA	7 cut(s)	27, 432, 542, 705, 872, 984, 999
SatI	GCNGC	2 cut(s)	45, 480
Sau3AI	GATC	3 cut(s)	454, 856, 1024
Sau96I	GGNCC	3 cut(s)	200, 394, 513
ScaI	AGTACT	4 cut(s)	62, 245, 601, 979
ScrFI	CCNGG	2 cut(s)	446, 611
SduI	GDGCHC	2 cut(s)	238, 379
SfaNI	GCATC	2 cut(s)	183, 512
Sfr274I	CTCGAG	1 cut(s)	247
SinI	GGWCC	2 cut(s)	200, 394
SlaI	CTCGAG	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SpeI	ACTAGT	2 cut(s)	557, 866
Sse9I	AATT	6 cut(s)	134, 312, 440, 884, 996, 1010
SsiI	CCGC	2 cut(s)	22, 993
SspMI	CTAG	6 cut(s)	365, 558, 597, 761, 867, 903
StyD4I	CCNGG	2 cut(s)	444, 609
TaaI	ACNGT	2 cut(s)	914, 982
TaiI	ACGT	3 cut(s)	531, 757, 807
TaqI	TCGA	2 cut(s)	248, 923
TasI	AATT	6 cut(s)	134, 312, 440, 884, 996, 1010
TatI	WGTACW	4 cut(s)	60, 243, 599, 977
TfiI	GAWTC	4 cut(s)	671, 773, 920, 1057
Tru1I	TTAA	7 cut(s)	27, 432, 542, 705, 872, 984, 999
Tru9I	TTAA	7 cut(s)	27, 432, 542, 705, 872, 984, 999
TscAI	CASTG	1 cut(s)	919
TseFI	GTSAC	3 cut(s)	524, 821, 1033
TseI	GCWGC	2 cut(s)	44, 479
Tsp45I	GTSAC	3 cut(s)	524, 821, 1033
TspDTI	ATGAA	4 cut(s)	144, 284, 508, 780
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	1 cut(s)	919
Van91I	CCANNNNNTGG	1 cut(s)	783
VpaK11BI	GGWCC	2 cut(s)	200, 394
XapI	RAATTY	2 cut(s)	134, 884
XbaI	TCTAGA	1 cut(s)	902
XhoI	CTCGAG	1 cut(s)	247
XspI	CTAG	6 cut(s)	365, 558, 597, 761, 867, 903
ZrmI	AGTACT	4 cut(s)	62, 245, 601, 979
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.