Rh3AG013800

Serine threonine-protein kinase At3g07070-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
860545 .. 862951
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG013800.1

Sequence Viewer

Length: 1179 bp
ATGAGTTGCTTTCCGTGTTTTGGCTCACAGAGAAATAAGAGATCAAGTATCAGGAGAGTAGATCATGCCTCTGCACCGTCTGTTGAACAGGAAATGAAAAAACAAAGACCCGCTGAGAGACATGTGACACACTCAACACACTCAACACACCGGACACACTCAAGTGTGGAAGTGGATGAATCACAAATCAATGCAAAGTGTTTCACTTTCCGTGAGCTAGCTACAGCAACAAAGAACTTCCGTCAGGAGTGCCTTCTGGGCGAAGGTGGATTTGGAAGAGTCTATAAGGGAACTCTTCGGTCGAGTGGGCAGGTGGTGGCTGTGAAGCAACTTGACAGAAATGGAATGCATGGACACAAGGAATTTCTCGGAGAAGTTTTGGTACTAAGCCTCCTACACCACCCAAACATAGTTAATCTAATTGGATATTGTGCCGACGGAGATCAAAGGCTTTTGGTTCATGAATTCATACCAGGGGGTACTCTAGAAGACCGAGCACAACCCTTATTCAAGGACCCAAAAAAGTTTCCTGAAATGGCAGATAGTCGTCTTAACAAGCAATTCCCTGAGAAAGATCTAAATCAGGCTGTTGCAATAGCTGCCATGTGTCTGCAAGATGAGGCATCAGTCCGGCCCTTCATGAGTGACGTTGTAACGACTTTAAGTTTTCTTCACACTAGTCCTGCTCCTGTTCCAGCTGATACAATCCCTAGTACTGAAAACCAGGATGGTAACTCTGAATGTGGTTCTGATATTTCTGGCGATGATGAGACCAATGGGGAGGCTTCAGATAATGAGATTATCAGAAGTTCAGACATTAACCACAGCCATGACAACTCAGATAAGGATGGCAATGGCCAAGACTTACGTCAATTAAGTGGTGTAGAATCCAAAGAATGGCATTCATTTGAACGAGACGTAGGCGTTTCTTCAGGTGACGAGAGAAGTAAAAGCAAGAGCAACAAGGGTGATCATGATACTAGTTTAAGCCAAGATAAATTTGAAAGTGTTACTTCTAGAAGCAACAGTGAAGAATCGAACGGAGAAGGTGTTTCTCATAGCAACAATAGAGTACCACAAAAAGAAGAGAGTACTGTTAAAGTTGGCGGAATTAAGAGCGCAGAATCATCCGAAGTGGACCTCTCAGTCACTCCAGTCGTAGGGAACCTGAATCAATGA

Protein Analysis

392

Amino Acids

43.0

Weight (kDa)

5.52

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 82 - 172 5.6e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 83 - 164 2.7e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 301
AasI GACNNNNNNGTC 1 cut(s) 1145
Acc36I ACCTGC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 897
AciI CCGC 2 cut(s) 111, 1107
AcoI YGGCCR 1 cut(s) 856
AcsI RAATTY 3 cut(s) 362, 464, 998
AcuI CTGAAG 2 cut(s) 771, 915
AfaI GTAC 5 cut(s) 384, 481, 715, 1074, 1093
AfiI CCNNNNNNNGG 3 cut(s) 20, 897, 1160
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 4 cut(s) 86, 511, 911, 1004
AhlI ACTAGT 2 cut(s) 677, 980
AjnI CCWGG 2 cut(s) 472, 723
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 4 cut(s) 217, 221, 599, 698
AluI AGCT 4 cut(s) 217, 221, 599, 698
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 3 cut(s) 112, 764, 909
AoxI GGCC 2 cut(s) 632, 856
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 3 cut(s) 362, 464, 998
AspLEI GCGC 1 cut(s) 1121
AspS9I GGNCC 3 cut(s) 514, 633, 1138
AsuHPI GGTGA 2 cut(s) 947, 980
AsuNHI GCTAGC 1 cut(s) 217
AvaII GGWCC 2 cut(s) 514, 1138
BalI TGGCCA 1 cut(s) 858
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 586
BccI CCATC 2 cut(s) 722, 842
BciT130I CCWGG 2 cut(s) 474, 725
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 3 cut(s) 112, 764, 909
BcuI ACTAGT 2 cut(s) 677, 980
BfaI CTAG 6 cut(s) 218, 485, 678, 711, 981, 1017
BfmI CTRYAG 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 301
BglI GCCNNNNNGGC 1 cut(s) 258
BglII AGATCT 1 cut(s) 574
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
BmcAI AGTACT 2 cut(s) 715, 1093
Bme1390I CCNGG 2 cut(s) 474, 725
Bme18I GGWCC 2 cut(s) 514, 1138
BmgT120I GGNCC 3 cut(s) 514, 633, 1138
BmiI GGNNCC 2 cut(s) 516, 1166
BmrFI CCNGG 2 cut(s) 474, 725
BmsI GCATC 1 cut(s) 632
BmtI GCTAGC 1 cut(s) 221
BoxI GACNNNNGTC 1 cut(s) 867
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 1137
BpuEI CTTGAG 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 764
BsaJI CCNNGG 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 1035, 1065
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 897, 1160
Bse1I ACTGG 1 cut(s) 1154
Bse3DI GCAATG 1 cut(s) 859
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 2 cut(s) 474, 725
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 4 cut(s) 181, 733, 853, 1127
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 3 cut(s) 20, 897, 1160
BseMI GCAATG 1 cut(s) 859
BseMII CTCAG 4 cut(s) 105, 558, 852, 1158
BseNI ACTGG 1 cut(s) 1154
BseXI GCAGC 1 cut(s) 586
BsgI GTGCAG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 2 cut(s) 634, 858
BsiEI CGRYCG 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 2 cut(s) 151, 631
BslI CCNNNNNNNGG 3 cut(s) 20, 897, 1160
BsmAI GTCTC 3 cut(s) 112, 764, 909
BsmBI CGTCTC 1 cut(s) 909
BsmI GAATGC 2 cut(s) 351, 901
BsnI GGCC 2 cut(s) 634, 858
Bso31I GGTCTC 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 5 cut(s) 41, 61, 442, 574, 970
BspACI CCGC 2 cut(s) 111, 1107
BspANI GGCC 2 cut(s) 634, 858
BspCNI CTCAG 4 cut(s) 106, 559, 851, 1157
BspHI TCATGA 3 cut(s) 460, 639, 973
BspLI GGNNCC 2 cut(s) 516, 1166
BspMI ACCTGC 1 cut(s) 301
BspOI GCTAGC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 859
BsrI ACTGG 1 cut(s) 1154
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 5 cut(s) 41, 61, 442, 574, 970
Bst2UI CCWGG 2 cut(s) 474, 725
Bst4CI ACNGT 3 cut(s) 78, 1028, 1096
Bst6I CTCTTC 3 cut(s) 271, 300, 1080
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 5 cut(s) 114, 386, 567, 838, 1144
BstF5I GGATG 4 cut(s) 181, 733, 853, 1127
BstHHI GCGC 1 cut(s) 1121
BstKTI GATC 5 cut(s) 44, 64, 445, 577, 973
BstMAI GTCTC 3 cut(s) 112, 764, 909
BstMBI GATC 5 cut(s) 41, 61, 442, 574, 970
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 2 cut(s) 258, 599
BstNI CCWGG 2 cut(s) 474, 725
BstNSI RCATGY 1 cut(s) 125
BstPAI GACNNNNGTC 1 cut(s) 867
BstSCI CCNGG 2 cut(s) 472, 723
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 2 cut(s) 634, 858
BtgZI GCGATG 1 cut(s) 777
BtsCI GGATG 4 cut(s) 181, 733, 853, 1127
BtsIMutI CAGTG 1 cut(s) 1033
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 219
CciI TCATGA 3 cut(s) 460, 639, 973
CfoI GCGC 1 cut(s) 1121
Cfr13I GGNCC 3 cut(s) 514, 633, 1138
Csp6I GTAC 5 cut(s) 383, 480, 714, 1073, 1092
CviAII CATG 8 cut(s) 65, 122, 350, 461, 604, 640, 830, 974
CviQI GTAC 5 cut(s) 383, 480, 714, 1073, 1092
DdeI CTNAG 5 cut(s) 114, 386, 567, 838, 1144
DpnI GATC 5 cut(s) 43, 63, 444, 576, 972
DpnII GATC 5 cut(s) 41, 61, 442, 574, 970
DrdI GACNNNNNNGTC 1 cut(s) 1145
DseDI GACNNNNNNGTC 1 cut(s) 1145
EaeI YGGCCR 1 cut(s) 856
Eam1104I CTCTTC 3 cut(s) 271, 300, 1080
EarI CTCTTC 3 cut(s) 271, 300, 1080
EciI GGCGGA 1 cut(s) 1122
Eco31I GGTCTC 1 cut(s) 764
Eco47I GGWCC 2 cut(s) 514, 1138
Eco57I CTGAAG 2 cut(s) 771, 915
EcoO109I RGGNCCY 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 472, 723
EcoT22I ATGCAT 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 909
FaeI CATG 8 cut(s) 68, 125, 353, 464, 607, 643, 833, 977
FalI AAGNNNNNCTT 2 cut(s) 997, 1029
FatI CATG 8 cut(s) 64, 121, 349, 460, 603, 639, 829, 973
FauI CCCGC 1 cut(s) 118
FbaI TGATCA 1 cut(s) 970
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 4 cut(s) 188, 740, 860, 1114
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 6 cut(s) 218, 485, 678, 711, 981, 1017
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 1137
HaeIII GGCC 2 cut(s) 634, 858
HapII CCGG 2 cut(s) 151, 631
HhaI GCGC 1 cut(s) 1121
Hin1II CATG 8 cut(s) 68, 125, 353, 464, 607, 643, 833, 977
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HinfI GANTC 6 cut(s) 179, 279, 887, 1034, 1124, 1171
HpaII CCGG 2 cut(s) 151, 631
HphI GGTGA 2 cut(s) 947, 980
Hpy166II GTNNAC 1 cut(s) 1138
Hpy188I TCNGA 8 cut(s) 371, 739, 751, 790, 806, 814, 841, 1132
Hpy188III TCNNGA 8 cut(s) 52, 245, 461, 485, 530, 640, 974, 1017
Hpy8I GTNNAC 1 cut(s) 1138
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 4 cut(s) 257, 263, 646, 1040
HpyCH4III ACNGT 3 cut(s) 78, 1028, 1096
HpyCH4IV ACGT 3 cut(s) 648, 868, 918
HpyCH4V TGCA 5 cut(s) 74, 194, 349, 593, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 599
HpyF3I CTNAG 5 cut(s) 114, 386, 567, 838, 1144
HpySE526I ACGT 3 cut(s) 648, 868, 918
Hsp92II CATG 8 cut(s) 68, 125, 353, 464, 607, 643, 833, 977
HspAI GCGC 1 cut(s) 1119
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 5 cut(s) 41, 61, 442, 574, 970
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 1 cut(s) 632
MaeI CTAG 6 cut(s) 218, 485, 678, 711, 981, 1017
MaeII ACGT 3 cut(s) 648, 868, 918
MaeIII GTNAC 7 cut(s) 124, 644, 652, 731, 935, 1009, 1147
MalI GATC 5 cut(s) 43, 63, 444, 576, 972
MboI GATC 5 cut(s) 41, 61, 442, 574, 970
MboII GAAGA 7 cut(s) 287, 288, 500, 662, 921, 1043, 1097
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 499
MlsI TGGCCA 1 cut(s) 858
MluCI AATT 7 cut(s) 362, 420, 464, 560, 872, 998, 1110
MluNI TGGCCA 1 cut(s) 858
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 5 cut(s) 79, 401, 613, 775, 1151
Mox20I TGGCCA 1 cut(s) 858
Mph1103I ATGCAT 1 cut(s) 351
MscI TGGCCA 1 cut(s) 858
MseI TTAA 8 cut(s) 414, 552, 662, 819, 875, 986, 1098, 1113
MslI CAYNNNNRTG 2 cut(s) 162, 828
Msp20I TGGCCA 1 cut(s) 858
MspA1I CMGCKG 2 cut(s) 113, 698
MspI CCGG 2 cut(s) 151, 631
MspR9I CCNGG 2 cut(s) 474, 725
Mva1269I GAATGC 2 cut(s) 351, 901
MvaI CCWGG 2 cut(s) 474, 725
MwoI GCNNNNNNNGC 2 cut(s) 258, 599
NdeII GATC 5 cut(s) 41, 61, 442, 574, 970
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 8 cut(s) 68, 125, 353, 464, 607, 643, 833, 977
NlaIV GGNNCC 2 cut(s) 516, 1166
NmuCI GTSAC 4 cut(s) 124, 644, 935, 1147
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 162
PagI TCATGA 3 cut(s) 460, 639, 973
PaqCI CACCTGC 1 cut(s) 301
PciI ACATGT 1 cut(s) 121
PctI GAATGC 2 cut(s) 351, 901
PfeI GAWTC 5 cut(s) 179, 887, 1034, 1124, 1171
PflMI CCANNNNNTGG 1 cut(s) 897
PkrI GCNGC 1 cut(s) 601
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 514
PscI ACATGT 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 867
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 472, 723
PspGI CCWGG 2 cut(s) 472, 723
PspN4I GGNNCC 2 cut(s) 516, 1166
PspPI GGNCC 3 cut(s) 514, 633, 1138
PspPPI RGGWCCY 1 cut(s) 514
PsuI RGATCY 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 5 cut(s) 384, 481, 715, 1074, 1093
RsaNI GTAC 5 cut(s) 383, 480, 714, 1073, 1092
RseI CAYNNNNRTG 2 cut(s) 162, 828
SaqAI TTAA 8 cut(s) 414, 552, 662, 819, 875, 986, 1098, 1113
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 5 cut(s) 41, 61, 442, 574, 970
Sau96I GGNCC 3 cut(s) 514, 633, 1138
ScaI AGTACT 2 cut(s) 715, 1093
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 474, 725
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 1 cut(s) 632
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 514, 1138
SmiMI CAYNNNNRTG 2 cut(s) 162, 828
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SpeI ACTAGT 2 cut(s) 677, 980
Sse9I AATT 7 cut(s) 362, 420, 464, 560, 872, 998, 1110
SsiI CCGC 2 cut(s) 111, 1107
SspMI CTAG 6 cut(s) 218, 485, 678, 711, 981, 1017
StyD4I CCNGG 2 cut(s) 472, 723
TaaI ACNGT 3 cut(s) 78, 1028, 1096
TaiI ACGT 3 cut(s) 651, 871, 921
TaqI TCGA 2 cut(s) 302, 1037
TaqII GACCGA 2 cut(s) 288, 507
TasI AATT 7 cut(s) 362, 420, 464, 560, 872, 998, 1110
TatI WGTACW 2 cut(s) 713, 1091
TfiI GAWTC 5 cut(s) 179, 887, 1034, 1124, 1171
Tru1I TTAA 8 cut(s) 414, 552, 662, 819, 875, 986, 1098, 1113
Tru9I TTAA 8 cut(s) 414, 552, 662, 819, 875, 986, 1098, 1113
TscAI CASTG 1 cut(s) 1033
TseFI GTSAC 4 cut(s) 124, 644, 935, 1147
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 4 cut(s) 124, 644, 935, 1147
TspDTI ATGAA 7 cut(s) 110, 192, 449, 457, 477, 628, 894
TspGWI ACGGA 4 cut(s) 200, 230, 453, 1056
TspRI CASTG 1 cut(s) 1033
Van91I CCANNNNNTGG 1 cut(s) 897
VpaK11BI GGWCC 2 cut(s) 514, 1138
XapI RAATTY 3 cut(s) 362, 464, 998
XbaI TCTAGA 2 cut(s) 484, 1016
XceI RCATGY 1 cut(s) 125
XspI CTAG 6 cut(s) 218, 485, 678, 711, 981, 1017
ZrmI AGTACT 2 cut(s) 715, 1093
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.