Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003079

Physical Location & Seq

Genomic Coordinates Reverse (-)

46129261 .. 46131250

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTTGCTTTTCGTGCTTTTCATCTCATGAAAAGAAAGCATCTGCCAAAAGATCAAATAGTGGGAAGAGAGAACAACTTTTGACTCCTTCCGAAAGGGAACCGACTAATAATGTAGCACCTGCTGAAGTGCCTAAACAAGCACCGGCTGCTGAGCAAACCACAGACAATAAGAATGCCAATGCAAATGCCAATAAAGATGGGGGTCATAATATTGCTGCACAAACTTTCACCTTCCGGGAACTGGCAACAGCAACAAAGAACTTCCGACAAGAATGTCTGATAGGCGAGGGCGGATTTGGAAGAGTTTATAAGGGGAAGCTTGAAACAACAGAACAGATTGTAGCTGTGAAGCAACTTGATAGGAATGGCTTGCAAGGCAATAGAGAGTTCCTTGTTGAGGCAGAGCCAGTATTTAAGGATCCTCATAAGTTTCCGGAATTAGCTGATCCACTTCTTCAAGGAGACTATCCGGTAAGAGCATTGAATCAAGCAGTTGCAGTTGCAGCAATGTGTCTTCATGACGAAGCCCCGGCTCGCCCCTTAATGAGTGATGTGGTCAGTGCTCTCAGTTTCCTTGGGACTGATGATGACGAAAGTGTTCCCGGCTCGCCTCTACAATCTGATGATGAAGAAATGTCCAACGTAGAAGATGAGAATCCAAAGGATGAAGAAACTGTAAGGGAACGCGAACGAGCTGTGGCAGAAGCCATAGAATGGGGCTCAACGTCAAGGAGCAATGCAGCCACGTCAAAGTTGGAAAGTACTGCTTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

28.17

Weight (kDa)

4.84

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07070 AT3G24790 AT3G24790 AT4G13190 AT4G13190 AT4G13190 AT4G13190 AT4G13190
fragaria_vesca	FvH4_2g19200 FvH4_6g01120
malus_domestica	MD04G1236200.v1.1 MD05G1176700.v1.1 MD10G1165400.v1.1 MD12G1255300.v1.1
prunus_persica	Prupe.6G356200_v2.0.a1 Prupe.8G203800_v2.0.a1
pyrus_communis	pycom05g16290 pycom12g23400
rosa_chinensis	RchiOBHm_Chr3g0448651 RchiOBHm_Chr6g0284981
rosa_laevigata	RLG00000012693 RLG00000025882
rosa_multiflora	Rmu_sc0003116.1_g000035
rosa_roxburghii	Rroxscaffold_6G00426920 Rroxscaffold_7G00183870 Rroxscaffold_7G00184150
rosa_rugosa	Rorug02G0615000
rosa_samantha	Rh3AG013800 Rh3BG013600 Rh3CG012700 Rh3DG014400 Rh6AG281200 Rh6BG281900 Rh6CG283600 Rh6DG276700
rosa_wichuraiana	Rw3G001020 Rw6G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AarI	CACCTGC	1 cut(s)	130
AasI	GACNNNNNNGTC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccII	CGCG	1 cut(s)	690
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	3 cut(s)	416, 429, 443
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	3 cut(s)	244, 400, 717
AgsI	TTSAA	3 cut(s)	326, 461, 487
AjiI	CACGTC	1 cut(s)	750
AluBI	AGCT	4 cut(s)	322, 347, 446, 698
AluI	AGCT	4 cut(s)	322, 347, 446, 698
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	416, 429, 443
Aor13HI	TCCGGA	1 cut(s)	436
ApeKI	GCWGC	4 cut(s)	149, 218, 506, 743
Asp700I	GAANNNNTTC	1 cut(s)	600
AsuC2I	CCSGG	3 cut(s)	239, 533, 606
AsuHPI	GGTGA	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	4 cut(s)	136, 205, 518, 755
BccI	CCATC	1 cut(s)	194
BcnI	CCSGG	3 cut(s)	239, 533, 606
BcoDI	GTCTC	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	4 cut(s)	150, 219, 507, 744
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	4 cut(s)	151, 220, 508, 745
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	3 cut(s)	239, 533, 606
BmgBI	CACGTC	1 cut(s)	750
BmiI	GGNNCC	2 cut(s)	102, 423
BmrFI	CCNGG	3 cut(s)	239, 533, 606
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuMI	CCSGG	3 cut(s)	239, 533, 606
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	531, 577
BsaWI	WCCGGW	2 cut(s)	436, 472
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 400, 717
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	249, 410
Bse3DI	GCAATG	2 cut(s)	516, 745
Bse8I	GATNNNNATC	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	531, 577
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	3 cut(s)	244, 400, 717
BseMI	GCAATG	2 cut(s)	516, 745
BseMII	CTCAG	2 cut(s)	144, 583
BseNI	ACTGG	2 cut(s)	249, 410
BseXI	GCAGC	4 cut(s)	136, 205, 518, 755
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	3 cut(s)	244, 400, 717
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	568, 725
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	53, 421, 448
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	145, 582
BspEI	TCCGGA	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	690
BspHI	TCATGA	2 cut(s)	28, 520
BspLI	GGNNCC	2 cut(s)	102, 423
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	3 cut(s)	416, 429, 443
BsrDI	GCAATG	2 cut(s)	516, 745
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	249, 410
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	531, 577
BssMI	GATC	3 cut(s)	53, 421, 448
BssT1I	CCWWGG	1 cut(s)	577
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	2 cut(s)	62, 298
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	374, 538, 611
BstDEI	CTNAG	2 cut(s)	153, 569
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	3 cut(s)	56, 424, 451
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	53, 421, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 149, 378, 506
BstSCI	CCNGG	3 cut(s)	237, 531, 604
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	4 cut(s)	136, 205, 518, 755
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	568
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	374, 538, 611
CciI	TCATGA	2 cut(s)	28, 520
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	2 cut(s)	29, 521
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	2 cut(s)	153, 569
DpnI	GATC	3 cut(s)	55, 423, 450
DpnII	GATC	3 cut(s)	53, 421, 448
DrdI	GACNNNNNNGTC	1 cut(s)	276
DseDI	GACNNNNNNGTC	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	62, 298
EarI	CTCTTC	2 cut(s)	62, 298
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	2 cut(s)	32, 524
FaiI	YATR	6 cut(s)	30, 210, 312, 429, 522, 713
FalI	AAGNNNNNCTT	1 cut(s)	754
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	2 cut(s)	28, 520
Fnu4HI	GCNGC	4 cut(s)	150, 219, 507, 744
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	4 cut(s)	150, 219, 507, 744
GluI	GCNGC	4 cut(s)	150, 219, 507, 744
HapII	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
Hin1II	CATG	2 cut(s)	32, 524
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	85, 487, 658
HpaII	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	94, 269, 282, 625
Hpy188III	TCNNGA	3 cut(s)	29, 437, 521
HpyAV	CCTTC	2 cut(s)	99, 244
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	3 cut(s)	645, 728, 749
HpyCH4V	TGCA	6 cut(s)	185, 221, 376, 500, 506, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 149, 378, 506
HpyF3I	CTNAG	2 cut(s)	153, 569
HpySE526I	ACGT	3 cut(s)	645, 728, 749
Hsp92II	CATG	2 cut(s)	32, 524
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	53, 421, 448
LmnI	GCTCC	1 cut(s)	735
LpnPI	CCDG	9 cut(s)	135, 159, 230, 251, 423, 450, 486, 546, 619
Lsp1109I	GCAGC	4 cut(s)	136, 205, 518, 755
LweI	GCATC	1 cut(s)	50
MaeII	ACGT	3 cut(s)	645, 728, 749
MalI	GATC	3 cut(s)	55, 423, 450
MboI	GATC	3 cut(s)	53, 421, 448
MboII	GAAGA	7 cut(s)	79, 315, 449, 509, 644, 662, 683
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	568, 725
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	3 cut(s)	292, 666, 738
MnlI	CCTC	4 cut(s)	283, 394, 435, 624
MroI	TCCGGA	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	2 cut(s)	417, 545
MspI	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
MspR9I	CCNGG	3 cut(s)	239, 533, 606
Mva1269I	GAATGC	1 cut(s)	181
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	4 cut(s)	15, 149, 378, 506
NciI	CCSGG	3 cut(s)	239, 533, 606
NdeII	GATC	3 cut(s)	53, 421, 448
NlaIII	CATG	2 cut(s)	32, 524
NlaIV	GGNNCC	2 cut(s)	102, 423
PagI	TCATGA	2 cut(s)	28, 520
PaqCI	CACCTGC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	487, 658
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	4 cut(s)	151, 220, 508, 745
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	102, 423
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
SaqAI	TTAA	2 cut(s)	417, 545
SatI	GCNGC	4 cut(s)	150, 219, 507, 744
Sau3AI	GATC	3 cut(s)	53, 421, 448
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	239, 533, 606
SduI	GDGCHC	2 cut(s)	568, 725
SetI	ASST	9 cut(s)	124, 236, 324, 349, 448, 648, 700, 731, 752
SfaNI	GCATC	1 cut(s)	50
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	1 cut(s)	294
SspI	AATATT	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	237, 531, 604
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	3 cut(s)	648, 731, 752
TasI	AATT	1 cut(s)	440
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	487, 658
Tru1I	TTAA	2 cut(s)	417, 545
Tru9I	TTAA	2 cut(s)	417, 545
TscAI	CASTG	1 cut(s)	568
TseI	GCWGC	4 cut(s)	149, 218, 506, 743
TspDTI	ATGAA	6 cut(s)	12, 45, 509, 645, 684, 762
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	717
XagI	CCTNNNNNAGG	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.