pycom12g23400

Serine threonine-protein kinase At3g07070-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
23998493 .. 23999883
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g23400.1

Sequence Viewer

Length: 1218 bp
ATGGGACTGGAGTACTTGCACGAAAAGGCCAATCCCTCTGTTGTCTATCGAGATTTGAAATCTTCGAACATCTTGTTAGACGAAGAATTCAATCCAAAGCTCTCAGATGTTGGACTTGCCCAGCTTGGCCCTGAGGGAGATAAGATGCGTGGACCATCAAGATTGATGGGAACCTATGGTTTCTGTGCTCCTGAGTATTCTAGATCGGGTGAAGTCACAATGAAGTCGGATGTGTACAGTTTCGGAGTTATTCTTCTGGAGCTCATTACCGGAAGAAGAGCCGTCGACACTACAAGGTCAAATGATGAGCAAAATCTAGTATCTTGGGCACAACCCTTATTCAGGGACCCAAAAAAGTATCCTGATATGGCAGATCCTCTTCTTAACAAGCAGTTCCCGGAAAGGGATCTAAATCAAGCTGTTGCAATGGCATCCATGTGTTTGCAAGAGGAGGCAGCAGTCCGTCCCTTCATGAGTGATGTTGTGACTACTCTAAGTTTTCTTTCCACAACTCCTCCTCCTCCTGAGGCTGTCCCTGCTCCTCTTCCAGCTGATCCAACCCCAACTGAAAAACGTGAAGAGAACAATGATGATTCAGAATGTGTTTCCGAATATTCAGAAGACGATAATTCTGATGCTGCAGGAGATTATGATGATGAAGACCAGGAGGCTTCTGATCAGGAGAGTATCAGAAATTCAAAGAGCAACCGCCGTAATGTTGACATTTCAAAAGGTGAAGATAGCGAAGAAGAACGCGTAACTCTTACAGAATCCAAAGAATGGCATTCATTTACAAGGGGCAGCATGATATCACGGAACGACAGTGTTAATTCAAGTGACCAGAGCAGCAAGGGTGGTAATAATCTGGATGGTAATTCAAACCAAGTGAGCAGCAGTCAATCCAAATATGCAAGTGTTTCTTCTAGAAGCAGCAGCAGAGGGTCAACAGAAGAAACCGTTTCCACTAGCAGAAAGAAAAAAGCATCACAAAAAGAGACTGCTGCTGTTACATTAGGCGGCAATAGCAGTACCGAGGAAAAATCTTCAGAAGGCGGAAGTGTTTGCACAGATGATCAGGATCAGGAAAACAGAAGCAGCAAAGTACCACAACTAACACCAGTACTGAAAGATGGAAAAGATTCTGTAGACCATCACAGAAACAACAACGGATCGCAGGATTTTAAAACATCGAAAAAATGTCAATCCAATCACTACTAA

Protein Analysis

406

Amino Acids

44.54

Weight (kDa)

4.73

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 161 2.4e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 108 2.1e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 780
AccI GTMKAC 2 cut(s) 285, 1146
AccII CGCG 1 cut(s) 756
AciI CCGC 3 cut(s) 709, 1017, 1053
AclWI GGATC 5 cut(s) 368, 414, 548, 1086, 1177
AcsI RAATTY 2 cut(s) 86, 694
AcuI CTGAAG 1 cut(s) 1029
AfaI GTAC 5 cut(s) 14, 236, 1030, 1104, 1122
AfiI CCNNNNNNNGG 3 cut(s) 342, 403, 780
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 6 cut(s) 58, 91, 699, 729, 834, 879
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 5 cut(s) 100, 124, 262, 419, 551
AluI AGCT 5 cut(s) 100, 124, 262, 419, 551
Alw21I GWGCWC 2 cut(s) 190, 264
Alw26I GTCTC 1 cut(s) 989
AlwI GGATC 5 cut(s) 368, 414, 548, 1086, 1177
AoxI GGCC 2 cut(s) 27, 127
ApeKI GCWGC 9 cut(s) 455, 638, 801, 846, 891, 930, 933, 1001, 1095
ApoI RAATTY 2 cut(s) 86, 694
Asp700I GAANNNNTTC 1 cut(s) 1138
AspS9I GGNCC 3 cut(s) 128, 152, 346
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 221, 746
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 2 cut(s) 152, 346
AxyI CCTNAGG 2 cut(s) 132, 525
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 627, 666
Bbv12I GWGCWC 2 cut(s) 190, 264
BbvI GCAGC 9 cut(s) 467, 625, 813, 858, 903, 942, 945, 988, 1107
BccI CCATC 5 cut(s) 160, 163, 863, 1124, 1158
BceAI ACGGC 2 cut(s) 266, 696
BciT130I CCWGG 1 cut(s) 665
BciVI GTATCC 1 cut(s) 369
BclI TGATCA 2 cut(s) 676, 1072
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 989
BfaI CTAG 4 cut(s) 201, 317, 924, 966
BfmI CTRYAG 2 cut(s) 639, 1143
BfuI GTATCC 1 cut(s) 369
BmcAI AGTACT 2 cut(s) 14, 1122
Bme1390I CCNGG 2 cut(s) 398, 665
Bme18I GGWCC 2 cut(s) 152, 346
BmgT120I GGNCC 3 cut(s) 128, 152, 346
BmiI GGNNCC 3 cut(s) 172, 347, 348
BmrFI CCNGG 2 cut(s) 398, 665
BmsI GCATC 4 cut(s) 135, 440, 625, 992
BpiI GAAGAC 2 cut(s) 627, 666
BpmI CTGGAG 2 cut(s) 29, 278
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 398
BsaBI GATNNNNATC 2 cut(s) 411, 1077
BsaJI CCNNGG 1 cut(s) 1032
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 499, 502, 529, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 403, 780
Bse1I ACTGG 2 cut(s) 12, 1118
Bse21I CCTNAGG 2 cut(s) 132, 525
Bse3DI GCAATG 1 cut(s) 432
Bse8I GATNNNNATC 2 cut(s) 411, 1077
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 1032
BseGI GGATG 3 cut(s) 235, 431, 874
BseJI GATNNNNATC 2 cut(s) 411, 1077
BseLI CCNNNNNNNGG 3 cut(s) 342, 403, 780
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 4 cut(s) 117, 123, 183, 516
BseNI ACTGG 2 cut(s) 12, 1118
BseRI GAGGAG 5 cut(s) 464, 504, 507, 510, 531
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 9 cut(s) 467, 625, 813, 858, 903, 942, 945, 988, 1107
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 756
BshFI GGCC 2 cut(s) 29, 129
BsiHKAI GWGCWC 2 cut(s) 190, 264
BsiSI CCGG 2 cut(s) 270, 398
BslFI GGGAC 4 cut(s) 18, 359, 450, 518
BslI CCNNNNNNNGG 3 cut(s) 342, 403, 780
BsmAI GTCTC 1 cut(s) 989
BsmFI GGGAC 4 cut(s) 18, 359, 450, 518
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 2 cut(s) 29, 129
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 190, 264, 331
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
BspACI CCGC 3 cut(s) 709, 1017, 1053
BspANI GGCC 2 cut(s) 29, 129
BspCNI CTCAG 4 cut(s) 116, 124, 184, 517
BspFNI CGCG 1 cut(s) 756
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 3 cut(s) 172, 347, 348
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 5 cut(s) 368, 414, 548, 1086, 1177
BspQI GCTCTTC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 12, 1118
BssECI CCNNGG 1 cut(s) 1032
BssMI GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 239, 824, 958
Bst6I CTCTTC 4 cut(s) 271, 384, 549, 573
BstAUI TGTACA 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 65
BstDEI CTNAG 5 cut(s) 103, 132, 192, 494, 525
BstENI CCTNNNNNAGG 1 cut(s) 340
BstF5I GGATG 3 cut(s) 235, 431, 874
BstFNI CGCG 1 cut(s) 756
BstKTI GATC 8 cut(s) 206, 376, 409, 556, 679, 1075, 1081, 1172
BstMAI GTCTC 1 cut(s) 989
BstMBI GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
BstMWI GCNNNNNNNGC 2 cut(s) 536, 1023
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 2 cut(s) 396, 663
BstSFI CTRYAG 2 cut(s) 639, 1143
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 9 cut(s) 467, 625, 813, 858, 903, 942, 945, 988, 1107
BstV2I GAAGAC 2 cut(s) 627, 666
BstX2I RGATCY 2 cut(s) 373, 406
BstYI RGATCY 2 cut(s) 373, 406
Bsu36I CCTNAGG 2 cut(s) 132, 525
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 2 cut(s) 29, 129
BtsCI GGATG 3 cut(s) 235, 431, 874
BtsIMutI CAGTG 1 cut(s) 829
CciI TCATGA 1 cut(s) 471
Cfr13I GGNCC 3 cut(s) 128, 152, 346
Csp6I GTAC 5 cut(s) 13, 235, 1029, 1103, 1121
CviAII CATG 3 cut(s) 436, 472, 805
CviQI GTAC 5 cut(s) 13, 235, 1029, 1103, 1121
DdeI CTNAG 5 cut(s) 103, 132, 192, 494, 525
DpnI GATC 8 cut(s) 205, 375, 408, 555, 678, 1074, 1080, 1171
DpnII GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
DraI TTTAAA 1 cut(s) 1183
Eam1104I CTCTTC 4 cut(s) 271, 384, 549, 573
EarI CTCTTC 4 cut(s) 271, 384, 549, 573
EciI GGCGGA 1 cut(s) 1068
Ecl136II GAGCTC 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 810
Eco47I GGWCC 2 cut(s) 152, 346
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 1029
Eco81I CCTNAGG 2 cut(s) 132, 525
EcoICRI GAGCTC 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 663
EcoRV GATATC 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 3 cut(s) 439, 475, 808
FaiI YATR 7 cut(s) 177, 368, 437, 473, 651, 806, 909
FalI AAGNNNNNCTT 2 cut(s) 904, 936
FaqI GGGAC 4 cut(s) 18, 359, 450, 518
FatI CATG 3 cut(s) 435, 471, 804
FbaI TGATCA 2 cut(s) 676, 1072
FblI GTMKAC 2 cut(s) 285, 1146
FokI GGATG 3 cut(s) 242, 418, 881
FriOI GRGCYC 1 cut(s) 264
FspBI CTAG 4 cut(s) 201, 317, 924, 966
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 2 cut(s) 29, 278
HaeIII GGCC 2 cut(s) 29, 129
HapII CCGG 2 cut(s) 270, 398
Hin1II CATG 3 cut(s) 439, 475, 808
HincII GTYRAC 3 cut(s) 286, 721, 945
HindII GTYRAC 3 cut(s) 286, 721, 945
HinfI GANTC 3 cut(s) 593, 770, 1139
HpaII CCGG 2 cut(s) 270, 398
HphI GGTGA 2 cut(s) 221, 746
Hpy166II GTNNAC 6 cut(s) 152, 235, 286, 721, 945, 1147
Hpy8I GTNNAC 6 cut(s) 152, 235, 286, 721, 945, 1147
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 478, 1043
HpyCH4III ACNGT 3 cut(s) 239, 824, 958
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 6 cut(s) 19, 425, 445, 641, 911, 1065
HpyF10VI GCNNNNNNNGC 2 cut(s) 536, 1023
HpyF3I CTNAG 5 cut(s) 103, 132, 192, 494, 525
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 3 cut(s) 439, 475, 808
KflI GGGWCCC 1 cut(s) 346
Ksp22I TGATCA 2 cut(s) 676, 1072
Kzo9I GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 3 cut(s) 193, 259, 544
Lsp1109I GCAGC 9 cut(s) 467, 625, 813, 858, 903, 942, 945, 988, 1107
LweI GCATC 4 cut(s) 135, 440, 625, 992
MaeI CTAG 4 cut(s) 201, 317, 924, 966
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 5 cut(s) 214, 484, 757, 836, 1006
MalI GATC 8 cut(s) 205, 375, 408, 555, 678, 1074, 1080, 1171
MboI GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
MflI RGATCY 2 cut(s) 373, 406
MhlI GDGCHC 3 cut(s) 190, 264, 331
MluCI AATT 5 cut(s) 86, 628, 694, 829, 874
MluI ACGCGT 1 cut(s) 754
MmeI TCCRAC 3 cut(s) 91, 207, 581
MroXI GAANNNNTTC 1 cut(s) 1138
MseI TTAA 3 cut(s) 384, 828, 1182
MslI CAYNNNNRTG 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 2 cut(s) 270, 398
MspR9I CCNGG 2 cut(s) 398, 665
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 756
MwoI GCNNNNNNNGC 2 cut(s) 536, 1023
NciI CCSGG 1 cut(s) 398
NdeII GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
NlaIII CATG 3 cut(s) 439, 475, 808
NlaIV GGNNCC 3 cut(s) 172, 347, 348
NmuCI GTSAC 3 cut(s) 214, 484, 836
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 271
PctI GAATGC 1 cut(s) 784
PdmI GAANNNNTTC 1 cut(s) 1138
PfeI GAWTC 3 cut(s) 593, 770, 1139
PflMI CCANNNNNTGG 1 cut(s) 780
PfoI TCCNGGA 1 cut(s) 396
PpuMI RGGWCCY 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 3 cut(s) 172, 347, 348
PspPI GGNCC 3 cut(s) 128, 152, 346
PspPPI RGGWCCY 1 cut(s) 346
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 2 cut(s) 373, 406
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 5 cut(s) 14, 236, 1030, 1104, 1122
RsaNI GTAC 5 cut(s) 13, 235, 1029, 1103, 1121
RseI CAYNNNNRTG 1 cut(s) 436
SacI GAGCTC 1 cut(s) 264
SalI GTCGAC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 384, 828, 1182
Sau3AI GATC 8 cut(s) 203, 373, 406, 553, 676, 1072, 1078, 1169
Sau96I GGNCC 3 cut(s) 128, 152, 346
ScaI AGTACT 2 cut(s) 14, 1122
ScrFI CCNGG 2 cut(s) 398, 665
SduI GDGCHC 3 cut(s) 190, 264, 331
SetI ASST 9 cut(s) 102, 126, 176, 264, 299, 421, 553, 577, 736
SfaNI GCATC 4 cut(s) 135, 440, 625, 992
SfcI CTRYAG 2 cut(s) 639, 1143
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 152, 346
SmiMI CAYNNNNRTG 1 cut(s) 436
Sse9I AATT 5 cut(s) 86, 628, 694, 829, 874
SsiI CCGC 3 cut(s) 709, 1017, 1053
SspI AATATT 1 cut(s) 614
SspMI CTAG 4 cut(s) 201, 317, 924, 966
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 396, 663
TaaI ACNGT 3 cut(s) 239, 824, 958
TaiI ACGT 1 cut(s) 577
TaqI TCGA 4 cut(s) 49, 65, 285, 1190
TasI AATT 5 cut(s) 86, 628, 694, 829, 874
TatI WGTACW 3 cut(s) 12, 234, 1120
TauI GCSGC 1 cut(s) 1020
TfiI GAWTC 3 cut(s) 593, 770, 1139
Tru1I TTAA 3 cut(s) 384, 828, 1182
Tru9I TTAA 3 cut(s) 384, 828, 1182
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 3 cut(s) 214, 484, 836
TseI GCWGC 9 cut(s) 455, 638, 801, 846, 891, 930, 933, 1001, 1095
Tsp45I GTSAC 3 cut(s) 214, 484, 836
TspDTI ATGAA 4 cut(s) 236, 460, 672, 777
TspGWI ACGGA 3 cut(s) 452, 829, 1182
TspRI CASTG 1 cut(s) 829
Van91I CCANNNNNTGG 1 cut(s) 780
VpaK11BI GGWCC 2 cut(s) 152, 346
XagI CCTNNNNNAGG 1 cut(s) 340
XapI RAATTY 2 cut(s) 86, 694
XbaI TCTAGA 2 cut(s) 200, 923
XmiI GTMKAC 2 cut(s) 285, 1146
XmnI GAANNNNTTC 1 cut(s) 1138
XspI CTAG 4 cut(s) 201, 317, 924, 966
ZrmI AGTACT 2 cut(s) 14, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.