Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003079

Physical Location & Seq

Genomic Coordinates Reverse (-)

50381382 .. 50383361

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG281900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTTGCTTTTCGTGCTTTTCATCTCATGAAAAGAAAGCATCTGCCAAAAGATCAAATAGTGGGAAGAGAGAACAACTTTTGACTCCTTCCGAAAGGGAACCGACTAATAATGTAGCACCTGCTGAAGTGCCTAAACAAGCACCGGCTGCTGAGCAAACCACAGACAATAAGAATGCCAATGCAAATGCCAATAAAGATGGGGGTCATAATATTGCTGCACAAACTTTCACCTTCCGGGAACTGGCAACAGCAACAAAGAACTTCCGACAAGAATGTCTGATAGGCGAGGGCGGATTTGGAAGAGTTTATAAGGGGAAGCTTGAAACAACAGAACAGATTGTAGCTGTGAAGCAACTTGATAGGAATGGCTTGCAAGGCAATAGAGAGTTCCTTGTTGAGGCAGAGCCAGTGTTTAAGGATCCTCATAAGTTTCCGGAACTAGCTGATCCACTTCTTCAAGGAGACTATCCGGTAAGAGCATTGAATCAAGCAGTTGCAGTTGCAGCAATGTGTCTTCATGACGAAGCACCGGCTCGTCCTTTAATGAGTGATGTGGTCAGTGCTCTCAGTTTCCTTGGGACTGATGATGAAGAAAGTGTTCCCGGCTCGCCCCTACAATCTGATGATGGAGAAATGTCCAACGTAGAAGATGAGAATCCAAAGGATGAAGAAATTGTAAGGGAACGCGAACGAGCTGTGGCAGAAGCCATAGAATGGGGTTCAACGTCAAGGAGCAATGCAGCCACGTCAAAGTTGGAAAGTACTGCTTCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

28.12

Weight (kDa)

4.89

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07070 AT3G24790 AT3G24790 AT4G13190 AT4G13190 AT4G13190 AT4G13190 AT4G13190
fragaria_vesca	FvH4_2g19200 FvH4_6g01120
malus_domestica	MD04G1236200.v1.1 MD05G1176700.v1.1 MD10G1165400.v1.1 MD12G1255300.v1.1
prunus_persica	Prupe.6G356200_v2.0.a1 Prupe.8G203800_v2.0.a1
pyrus_communis	pycom05g16290 pycom12g23400
rosa_chinensis	RchiOBHm_Chr3g0448651 RchiOBHm_Chr6g0284981
rosa_laevigata	RLG00000012693 RLG00000025882
rosa_multiflora	Rmu_sc0003116.1_g000035
rosa_roxburghii	Rroxscaffold_6G00426920 Rroxscaffold_7G00183870 Rroxscaffold_7G00184150
rosa_rugosa	Rorug02G0615000
rosa_samantha	Rh3AG013800 Rh3BG013600 Rh3CG012700 Rh3DG014400 Rh6AG281200 Rh6BG281900 Rh6CG283600 Rh6DG276700
rosa_wichuraiana	Rw3G001020 Rw6G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AarI	CACCTGC	1 cut(s)	130
AasI	GACNNNNNNGTC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccII	CGCG	1 cut(s)	690
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	3 cut(s)	416, 429, 443
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	3 cut(s)	244, 400, 717
AgsI	TTSAA	4 cut(s)	326, 461, 487, 726
AjiI	CACGTC	1 cut(s)	750
AluBI	AGCT	4 cut(s)	322, 347, 446, 698
AluI	AGCT	4 cut(s)	322, 347, 446, 698
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	416, 429, 443
Aor13HI	TCCGGA	1 cut(s)	436
ApeKI	GCWGC	4 cut(s)	149, 218, 506, 743
Asp700I	GAANNNNTTC	1 cut(s)	600
AsuC2I	CCSGG	2 cut(s)	239, 606
AsuHPI	GGTGA	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	4 cut(s)	136, 205, 518, 755
BccI	CCATC	2 cut(s)	194, 623
BcnI	CCSGG	2 cut(s)	239, 606
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	4 cut(s)	150, 219, 507, 744
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	4 cut(s)	151, 220, 508, 745
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	2 cut(s)	239, 606
BmgBI	CACGTC	1 cut(s)	750
BmiI	GGNNCC	2 cut(s)	102, 423
BmrFI	CCNGG	2 cut(s)	239, 606
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	239, 606
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	577
BsaWI	WCCGGW	2 cut(s)	436, 472
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 400, 717
Bse118I	RCCGGY	2 cut(s)	145, 532
Bse1I	ACTGG	2 cut(s)	249, 410
Bse3DI	GCAATG	2 cut(s)	516, 745
Bse8I	GATNNNNATC	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	3 cut(s)	244, 400, 717
BseMI	GCAATG	2 cut(s)	516, 745
BseMII	CTCAG	2 cut(s)	144, 583
BseNI	ACTGG	2 cut(s)	249, 410
BseXI	GCAGC	4 cut(s)	136, 205, 518, 755
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	3 cut(s)	244, 400, 717
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	53, 421, 448
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	145, 582
BspEI	TCCGGA	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	690
BspHI	TCATGA	2 cut(s)	28, 520
BspLI	GGNNCC	2 cut(s)	102, 423
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	3 cut(s)	416, 429, 443
BsrDI	GCAATG	2 cut(s)	516, 745
BsrFI	RCCGGY	2 cut(s)	145, 532
BsrI	ACTGG	2 cut(s)	249, 410
BssAI	RCCGGY	2 cut(s)	145, 532
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	3 cut(s)	53, 421, 448
BssT1I	CCWWGG	1 cut(s)	577
Bst6I	CTCTTC	2 cut(s)	62, 298
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	374, 611
BstDEI	CTNAG	2 cut(s)	153, 569
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	3 cut(s)	56, 424, 451
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	53, 421, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 149, 378, 506
BstSCI	CCNGG	2 cut(s)	237, 604
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	4 cut(s)	136, 205, 518, 755
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	417, 568
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	374, 611
CciI	TCATGA	2 cut(s)	28, 520
Cfr10I	RCCGGY	2 cut(s)	145, 532
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	2 cut(s)	29, 521
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	2 cut(s)	153, 569
DpnI	GATC	3 cut(s)	55, 423, 450
DpnII	GATC	3 cut(s)	53, 421, 448
DrdI	GACNNNNNNGTC	1 cut(s)	276
DseDI	GACNNNNNNGTC	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	62, 298
EarI	CTCTTC	2 cut(s)	62, 298
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	2 cut(s)	32, 524
FaiI	YATR	6 cut(s)	30, 210, 312, 429, 522, 713
FalI	AAGNNNNNCTT	1 cut(s)	754
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	2 cut(s)	28, 520
Fnu4HI	GCNGC	4 cut(s)	150, 219, 507, 744
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	4 cut(s)	150, 219, 507, 744
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	4 cut(s)	150, 219, 507, 744
HapII	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
Hin1II	CATG	2 cut(s)	32, 524
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	85, 487, 658
HpaII	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	94, 269, 282, 625
Hpy188III	TCNNGA	3 cut(s)	29, 437, 521
HpyAV	CCTTC	2 cut(s)	99, 244
HpyCH4IV	ACGT	3 cut(s)	645, 728, 749
HpyCH4V	TGCA	6 cut(s)	185, 221, 376, 500, 506, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 149, 378, 506
HpyF3I	CTNAG	2 cut(s)	153, 569
HpySE526I	ACGT	3 cut(s)	645, 728, 749
Hsp92II	CATG	2 cut(s)	32, 524
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	53, 421, 448
LmnI	GCTCC	1 cut(s)	735
LpnPI	CCDG	9 cut(s)	135, 159, 230, 251, 423, 450, 486, 546, 619
Lsp1109I	GCAGC	4 cut(s)	136, 205, 518, 755
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	3 cut(s)	645, 728, 749
MalI	GATC	3 cut(s)	55, 423, 450
MboI	GATC	3 cut(s)	53, 421, 448
MboII	GAAGA	7 cut(s)	79, 315, 449, 509, 605, 662, 683
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	3 cut(s)	292, 666, 738
MnlI	CCTC	3 cut(s)	283, 394, 435
MroI	TCCGGA	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	2 cut(s)	417, 545
MspI	CCGG	6 cut(s)	146, 238, 437, 473, 533, 606
MspR9I	CCNGG	2 cut(s)	239, 606
Mva1269I	GAATGC	1 cut(s)	181
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	4 cut(s)	15, 149, 378, 506
NciI	CCSGG	2 cut(s)	239, 606
NdeII	GATC	3 cut(s)	53, 421, 448
NlaIII	CATG	2 cut(s)	32, 524
NlaIV	GGNNCC	2 cut(s)	102, 423
PagI	TCATGA	2 cut(s)	28, 520
PaqCI	CACCTGC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	487, 658
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	4 cut(s)	151, 220, 508, 745
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	102, 423
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
SaqAI	TTAA	2 cut(s)	417, 545
SatI	GCNGC	4 cut(s)	150, 219, 507, 744
Sau3AI	GATC	3 cut(s)	53, 421, 448
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	239, 606
SduI	GDGCHC	1 cut(s)	568
SetI	ASST	9 cut(s)	124, 236, 324, 349, 448, 648, 700, 731, 752
SfaNI	GCATC	1 cut(s)	50
Sse9I	AATT	1 cut(s)	675
SsiI	CCGC	1 cut(s)	294
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	237, 604
StyI	CCWWGG	1 cut(s)	577
TaiI	ACGT	3 cut(s)	648, 731, 752
TasI	AATT	1 cut(s)	675
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	487, 658
Tru1I	TTAA	2 cut(s)	417, 545
Tru9I	TTAA	2 cut(s)	417, 545
TscAI	CASTG	2 cut(s)	417, 568
TseI	GCWGC	4 cut(s)	149, 218, 506, 743
TspDTI	ATGAA	5 cut(s)	12, 45, 509, 606, 684
TspRI	CASTG	2 cut(s)	417, 568
Van91I	CCANNNNNTGG	1 cut(s)	717
XagI	CCTNNNNNAGG	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	1 cut(s)	443
ZrmI	AGTACT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.