Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003079

Physical Location & Seq

Genomic Coordinates Reverse (-)

7659303 .. 7662283

Gene Structure 2981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13190.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGTTGTTTCTTGGGTCCATCGACAAACAACAAAAGTAGGGAGAATGAAGGCTCATCTATGGCTGCTCCTTATGAACAACAAAACCTACCACGGAATGATCGTAGGCAGATAACAACATGGGAAGCGGTGGGAACGAACAAAGAATCACCGAAAAATATCAAGGCAAAGAGTTTCAAATTTCGTGAATTAGCAACCGCTACAAATAGTTTCAGGCAAGAGTTCTTGATCGGAGAAGGAGGGTTTGGGAGGGTTTACAAAGGAAAGATGGAGAAGACAGGACAGGTGGTAGCTGTGAAGCAACTTGACCGTAATGGATTACAAGGGAATAGAGAGTTTCTGGTAGAGATCTTCAGGTTAAGTCTTCTTCATCATCCCAACCTTGCCAATCTCATTGGATATTGCCTTGATGGAGACCAGAGACTTCTTGTTCACGAGTTCATGCCTCTTGGTTCCCTTGAAGATCATCTCCTAGATGTTGTAGTAGGACAACAACCATTGGATTGGAACTCTCGGATAAGGATTGCCTTAGGAGCCGCAAAAGGGCTCGAATATCTCCACGAAAAGGCAAACCCTCCGGTGATATATCGAGATTTCAAATCGTCAAATATATTGCTTAATGTAGATTTTGATGCAAAACTATCAGATTTTGGTTTGGCAAAACTTGGTTCGGTTGGGGACACACAAAATGTATCTTCCCGAGTAGTGGGAACTTATGGTTATTGCGCTCCTGAGTATCACAAAACCGGTCAGCTGACGGTTAAATCTGATGTATATAGTTTTGGGGTTGTGTTGTTGGAACTCATAACCGGTAAGCGAGTTATCGACACAACGAGACCATGTCATGAACAAAATCTGGTTACTTGGGCACAACCGATTTTCAGAGAACCAAATAGATTCCCCGAGCTAGCGGATCCACTTCTTCAAGGGGAGTTCCCGGAAAAAAGTTTGAACCAAGCTGTAGCAATAGCGGCAATGTGTCTACAAGAAGAACCAATAGTTCGACCTTTAATCAGTGATGTTGTCACCGCCTTAAGTTTTATGAGTACAGAAACCGGTTCACCTTCCGGTCTAACGGGAACCGCTCTTAACCCTTTATCTCCTAAGACCGTGGAGGACCAGGGCTGGCTTCAATGTGAGTCTCCAAGAGATGTGTACTCGTTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

389

Amino Acids

43.22

Weight (kDa)

6.04

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 201	4.4e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 252	3.4e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07070 AT3G24790 AT3G24790 AT4G13190 AT4G13190 AT4G13190 AT4G13190 AT4G13190
fragaria_vesca	FvH4_2g19200 FvH4_6g01120
malus_domestica	MD04G1236200.v1.1 MD05G1176700.v1.1 MD10G1165400.v1.1 MD12G1255300.v1.1
prunus_persica	Prupe.6G356200_v2.0.a1 Prupe.8G203800_v2.0.a1
pyrus_communis	pycom05g16290 pycom12g23400
rosa_chinensis	RchiOBHm_Chr3g0448651 RchiOBHm_Chr6g0284981
rosa_laevigata	RLG00000012693 RLG00000025882
rosa_multiflora	Rmu_sc0003116.1_g000035
rosa_roxburghii	Rroxscaffold_6G00426920 Rroxscaffold_7G00183870 Rroxscaffold_7G00184150
rosa_rugosa	Rorug02G0615000
rosa_samantha	Rh3AG013800 Rh3BG013600 Rh3CG012700 Rh3DG014400 Rh6AG281200 Rh6BG281900 Rh6CG283600 Rh6DG276700
rosa_wichuraiana	Rw3G001020 Rw6G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1085
AccI	GTMKAC	1 cut(s)	982
AciI	CCGC	7 cut(s)	128, 198, 537, 911, 971, 1029, 1083
AclWI	GGATC	2 cut(s)	908, 921
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	1048, 1157
AfiI	CCNNNNNNNGG	3 cut(s)	543, 565, 706
AflII	CTTAAG	1 cut(s)	1033
AgeI	ACCGGT	3 cut(s)	746, 809, 1055
AgsI	TTSAA	6 cut(s)	178, 461, 598, 926, 952, 1133
AjnI	CCWGG	1 cut(s)	1119
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	4 cut(s)	293, 754, 907, 959
AluI	AGCT	4 cut(s)	293, 754, 907, 959
Alw26I	GTCTC	4 cut(s)	408, 415, 829, 1146
AlwI	GGATC	2 cut(s)	908, 921
Ama87I	CYCGRG	2 cut(s)	699, 902
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	179
AsiGI	ACCGGT	3 cut(s)	746, 809, 1055
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	2 cut(s)	17, 1117
AsuC2I	CCSGG	1 cut(s)	938
AsuHPI	GGTGA	4 cut(s)	141, 592, 1018, 1053
AsuNHI	GCTAGC	1 cut(s)	907
AvaI	CYCGRG	2 cut(s)	699, 902
AvaII	GGWCC	2 cut(s)	17, 1117
AxyI	CCTNAGG	1 cut(s)	529
BaeGI	GKGCMC	1 cut(s)	871
BamHI	GGATCC	1 cut(s)	913
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	434
BbsI	GAAGAC	2 cut(s)	281, 356
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	3 cut(s)	28, 262, 404
BciT130I	CCWGG	1 cut(s)	1121
BcnI	CCSGG	1 cut(s)	938
BcoDI	GTCTC	4 cut(s)	408, 415, 829, 1146
BfaI	CTAG	2 cut(s)	473, 908
BfmI	CTRYAG	1 cut(s)	960
BfrI	CTTAAG	1 cut(s)	1033
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	3 cut(s)	66, 537, 972
BlsI	GCNGC	3 cut(s)	67, 538, 973
Bme1390I	CCNGG	2 cut(s)	938, 1121
Bme18I	GGWCC	2 cut(s)	17, 1117
BmeT110I	CYCGRG	2 cut(s)	699, 902
BmgT120I	GGNCC	2 cut(s)	17, 1117
BmiI	GGNNCC	5 cut(s)	18, 454, 535, 915, 1081
BmrFI	CCNGG	2 cut(s)	938, 1121
BmsI	GCATC	1 cut(s)	622
BmtI	GCTAGC	1 cut(s)	911
BpiI	GAAGAC	2 cut(s)	281, 356
BpuMI	CCSGG	1 cut(s)	938
BsaI	GGTCTC	2 cut(s)	408, 829
BsaJI	CCNNGG	3 cut(s)	92, 1110, 1120
BsaWI	WCCGGW	5 cut(s)	577, 746, 809, 1055, 1067
Bsc4I	CCNNNNNNNGG	3 cut(s)	543, 565, 706
Bse118I	RCCGGY	3 cut(s)	746, 809, 1055
Bse21I	CCTNAGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	1121
BseDI	CCNNGG	3 cut(s)	92, 1110, 1120
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	543, 565, 706
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	871
BseXI	GCAGC	1 cut(s)	52
BshTI	ACCGGT	3 cut(s)	746, 809, 1055
BsiHKCI	CYCGRG	2 cut(s)	699, 902
BsiSI	CCGG	6 cut(s)	578, 747, 810, 938, 1056, 1068
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	3 cut(s)	543, 565, 706
BsmAI	GTCTC	4 cut(s)	408, 415, 829, 1146
BsmFI	GGGAC	1 cut(s)	692
Bso31I	GGTCTC	2 cut(s)	408, 829
BsoBI	CYCGRG	2 cut(s)	699, 902
Bsp1286I	GDGCHC	2 cut(s)	549, 871
Bsp143I	GATC	5 cut(s)	100, 228, 348, 463, 913
BspACI	CCGC	7 cut(s)	128, 198, 537, 911, 971, 1029, 1083
BspCNI	CTCAG	1 cut(s)	724
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	5 cut(s)	18, 454, 535, 915, 1081
BspOI	GCTAGC	1 cut(s)	911
BspPI	GGATC	2 cut(s)	908, 921
BspTI	CTTAAG	1 cut(s)	1033
BspTNI	GGTCTC	2 cut(s)	408, 829
BsrBI	CCGCTC	1 cut(s)	1085
BsrDI	GCAATG	1 cut(s)	981
BsrFI	RCCGGY	3 cut(s)	746, 809, 1055
BssAI	RCCGGY	3 cut(s)	746, 809, 1055
BssECI	CCNNGG	3 cut(s)	92, 1110, 1120
BssMI	GATC	5 cut(s)	100, 228, 348, 463, 913
BssSI	CACGAG	1 cut(s)	434
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	1121
Bst4CI	ACNGT	3 cut(s)	311, 760, 1111
BstAFI	CTTAAG	1 cut(s)	1033
BstC8I	GCNNGC	2 cut(s)	909, 1127
BstDEI	CTNAG	3 cut(s)	529, 732, 1104
BstDSI	CCRYGG	2 cut(s)	92, 1110
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	5 cut(s)	103, 231, 351, 466, 916
BstMAI	GTCTC	4 cut(s)	408, 415, 829, 1146
BstMBI	GATC	5 cut(s)	100, 228, 348, 463, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	533, 971
BstNI	CCWGG	1 cut(s)	1121
BstSCI	CCNGG	2 cut(s)	936, 1119
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	871
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	2 cut(s)	281, 356
BstX2I	RGATCY	2 cut(s)	348, 913
BstXI	CCANNNNNNTGG	1 cut(s)	504
BstYI	RGATCY	2 cut(s)	348, 913
Bsu36I	CCTNAGG	1 cut(s)	529
BtgI	CCRYGG	2 cut(s)	92, 1110
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	1021
Cac8I	GCNNGC	2 cut(s)	909, 1127
CciI	TCATGA	1 cut(s)	844
CfoI	GCGC	1 cut(s)	728
Cfr10I	RCCGGY	3 cut(s)	746, 809, 1055
Cfr13I	GGNCC	2 cut(s)	17, 1117
Csp6I	GTAC	2 cut(s)	1047, 1156
CspAI	ACCGGT	3 cut(s)	746, 809, 1055
CviAII	CATG	4 cut(s)	120, 442, 840, 845
CviQI	GTAC	2 cut(s)	1047, 1156
DdeI	CTNAG	3 cut(s)	529, 732, 1104
DpnI	GATC	5 cut(s)	102, 230, 350, 465, 915
DpnII	GATC	5 cut(s)	100, 228, 348, 463, 913
Eco24I	GRGCYC	1 cut(s)	549
Eco31I	GGTCTC	2 cut(s)	408, 829
Eco47I	GGWCC	2 cut(s)	17, 1117
Eco57I	CTGAAG	1 cut(s)	337
Eco81I	CCTNAGG	1 cut(s)	529
Eco88I	CYCGRG	2 cut(s)	699, 902
EcoRII	CCWGG	1 cut(s)	1119
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	4 cut(s)	123, 445, 843, 848
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	4 cut(s)	119, 441, 839, 844
FblI	GTMKAC	1 cut(s)	982
Fnu4HI	GCNGC	3 cut(s)	66, 537, 972
FokI	GGATG	1 cut(s)	360
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	66, 537, 972
FspBI	CTAG	2 cut(s)	473, 908
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	3 cut(s)	66, 537, 972
HapII	CCGG	6 cut(s)	578, 747, 810, 938, 1056, 1068
HhaI	GCGC	1 cut(s)	728
Hin1II	CATG	4 cut(s)	123, 445, 843, 848
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HinfI	GANTC	3 cut(s)	146, 897, 1139
HpaII	CCGG	6 cut(s)	578, 747, 810, 938, 1056, 1068
HphI	GGTGA	4 cut(s)	141, 592, 1018, 1053
Hpy166II	GTNNAC	5 cut(s)	256, 433, 983, 1061, 1156
Hpy188I	TCNGA	5 cut(s)	233, 516, 646, 769, 884
Hpy188III	TCNNGA	7 cut(s)	185, 226, 434, 590, 699, 731, 845
Hpy8I	GTNNAC	5 cut(s)	256, 433, 983, 1061, 1156
HpyAV	CCTTC	3 cut(s)	44, 230, 1074
HpyCH4III	ACNGT	3 cut(s)	311, 760, 1111
HpyCH4V	TGCA	1 cut(s)	635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	533, 971
HpyF3I	CTNAG	3 cut(s)	529, 732, 1104
Hsp92II	CATG	4 cut(s)	123, 445, 843, 848
HspAI	GCGC	1 cut(s)	726
Kzo9I	GATC	5 cut(s)	100, 228, 348, 463, 913
LmnI	GCTCC	3 cut(s)	73, 533, 733
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	473, 908
MaeIII	GTNAC	3 cut(s)	859, 1024, 1161
MalI	GATC	5 cut(s)	102, 230, 350, 465, 915
MbiI	CCGCTC	1 cut(s)	1085
MboI	GATC	5 cut(s)	100, 228, 348, 463, 913
MboII	GAAGA	8 cut(s)	286, 343, 356, 359, 473, 687, 914, 1001
MflI	RGATCY	2 cut(s)	348, 913
MhlI	GDGCHC	2 cut(s)	549, 871
MluCI	AATT	2 cut(s)	179, 188
MlyI	GAGTC	1 cut(s)	1148
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	5 cut(s)	233, 243, 456, 585, 1108
MseI	TTAA	6 cut(s)	359, 618, 762, 1010, 1034, 1089
MspA1I	CMGCKG	1 cut(s)	754
MspCI	CTTAAG	1 cut(s)	1033
MspI	CCGG	6 cut(s)	578, 747, 810, 938, 1056, 1068
MspR9I	CCNGG	2 cut(s)	938, 1121
MvaI	CCWGG	1 cut(s)	1121
MwoI	GCNNNNNNNGC	2 cut(s)	533, 971
NciI	CCSGG	1 cut(s)	938
NdeII	GATC	5 cut(s)	100, 228, 348, 463, 913
NheI	GCTAGC	1 cut(s)	907
NlaIII	CATG	4 cut(s)	123, 445, 843, 848
NlaIV	GGNNCC	5 cut(s)	18, 454, 535, 915, 1081
NmuCI	GTSAC	1 cut(s)	1024
PagI	TCATGA	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	146, 897
PflFI	GACNNNGTC	1 cut(s)	840
PfoI	TCCNGGA	1 cut(s)	936
PinAI	ACCGGT	3 cut(s)	746, 809, 1055
PkrI	GCNGC	3 cut(s)	67, 538, 973
PleI	GAGTC	1 cut(s)	1147
PpsI	GAGTC	1 cut(s)	1147
Psp6I	CCWGG	1 cut(s)	1119
PspGI	CCWGG	1 cut(s)	1119
PspN4I	GGNNCC	5 cut(s)	18, 454, 535, 915, 1081
PspPI	GGNCC	2 cut(s)	17, 1117
PsuI	RGATCY	2 cut(s)	348, 913
PsyI	GACNNNGTC	1 cut(s)	840
PvuII	CAGCTG	1 cut(s)	754
RsaI	GTAC	2 cut(s)	1048, 1157
RsaNI	GTAC	2 cut(s)	1047, 1156
SaqAI	TTAA	6 cut(s)	359, 618, 762, 1010, 1034, 1089
SatI	GCNGC	3 cut(s)	66, 537, 972
Sau3AI	GATC	5 cut(s)	100, 228, 348, 463, 913
Sau96I	GGNCC	2 cut(s)	17, 1117
SchI	GAGTC	1 cut(s)	1148
ScrFI	CCNGG	2 cut(s)	938, 1121
SduI	GDGCHC	2 cut(s)	549, 871
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	960
SinI	GGWCC	2 cut(s)	17, 1117
SmlI	CTYRAG	1 cut(s)	1033
SmoI	CTYRAG	1 cut(s)	1033
Sse9I	AATT	2 cut(s)	179, 188
SsiI	CCGC	7 cut(s)	128, 198, 537, 911, 971, 1029, 1083
SspMI	CTAG	2 cut(s)	473, 908
StyD4I	CCNGG	2 cut(s)	936, 1119
TaaI	ACNGT	3 cut(s)	311, 760, 1111
TaqI	TCGA	5 cut(s)	23, 549, 589, 825, 1003
TasI	AATT	2 cut(s)	179, 188
TatI	WGTACW	2 cut(s)	1046, 1155
TauI	GCSGC	2 cut(s)	539, 974
TfiI	GAWTC	2 cut(s)	146, 897
Tru1I	TTAA	6 cut(s)	359, 618, 762, 1010, 1034, 1089
Tru9I	TTAA	6 cut(s)	359, 618, 762, 1010, 1034, 1089
TscAI	CASTG	1 cut(s)	1021
TseFI	GTSAC	1 cut(s)	1024
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	1024
TspDTI	ATGAA	5 cut(s)	63, 90, 359, 430, 861
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	1021
Tth111I	GACNNNGTC	1 cut(s)	840
Vha464I	CTTAAG	1 cut(s)	1033
VpaK11BI	GGWCC	2 cut(s)	17, 1117
XapI	RAATTY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	982
XspI	CTAG	2 cut(s)	473, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.