Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003079

Physical Location & Seq

Genomic Coordinates Forward (+)

860545 .. 862951

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAGTTGCTTTCCGTGTTTTGGCTCACAGAGAAATAAGAGATCAAGTATCAGGAGAGTAGATCATGCCTCTGCACCGTCTGTTGAACAGGAAATGAAAAAACAAAGACCCGCTGAGAGACATGTGACACACTCAACACACTCAACACACCGGACACACTCAAGTGTGGAAGTGGATGAATCACAAATCAATGCAAAGTGTTTCACTTTCCGTGAGCTAGCTACAGCAACAAAGAACTTCCGTCAGGAGTGCCTTCTGGGCGAAGGTGGATTTGGAAGAGTCTATAAGGGAACTCTTCGGTCGAGTGGGCAGGTGGTGGCTGTGAAGCAACTTGACAGAAATGGAATGCATGGACACAAGGAATTTCTCGGAGAAGTTTTGGCACAACCCTTATTCAAGGACCCAAAAAAGTTTCCTGAAATGGCAGATAGTCGTCTTAACAAGCAATTCCCTGAGAAAGATCTAAATCAGGCTGTTGCAATAGCTGCCATGTGTCTGCAAGATGAGGCATCAGTCCGGCCCTTCATGAGTGACGTTGTAACGACTTTAAGTTTTCTTCACACTAGTCCTGCTCCTGTTCCAGCTGATACAATCCCTAGTACTGAAAACCAGGATGGTAACTCTGAATGTGGTTCTGATATTTCTGGCGATGATGAGACCAATGGGGAGGCTTCAGATAATGAGATTATCAGAAGTTCAGACATTAACCACAGCCATGACAACTCAGATAAGGATGGCAATGGCCAAGACTTACGTCAATTAAGTGGTGTAGAATCCAAAGAATGGCATTCATTTGAACGAGACGTAGGCGTTTCTTCAGGTGACGAGAGAAGTAAAAGCAAGAGCAACAAGGGTGATCATGATACTAGTTTAAGCCAAGATAAATTTGAAAGTGTTACTTCTAGAAGCAACAGTGAAGAATCGAACGGAGAAGGTGTTTCTCATAGCAACAATAGAGTACCACAAAAAGAAGAGAGTACTGTTAAAGTTGGCGGAATTAAGAGCGCAGAATCATCCGAAGTGGACCTCTCAGTCACTCCAGTCGTAGGGAACCTGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0038023 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0050789 GO:0050794 GO:0050896 GO:0050918 GO:0051286 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

38.79

Weight (kDa)

5.56

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07070 AT3G24790 AT3G24790 AT4G13190 AT4G13190 AT4G13190 AT4G13190 AT4G13190
fragaria_vesca	FvH4_2g19200 FvH4_6g01120
malus_domestica	MD04G1236200.v1.1 MD05G1176700.v1.1 MD10G1165400.v1.1 MD12G1255300.v1.1
prunus_persica	Prupe.6G356200_v2.0.a1 Prupe.8G203800_v2.0.a1
pyrus_communis	pycom05g16290 pycom12g23400
rosa_chinensis	RchiOBHm_Chr3g0448651 RchiOBHm_Chr6g0284981
rosa_laevigata	RLG00000012693 RLG00000025882
rosa_multiflora	Rmu_sc0003116.1_g000035
rosa_roxburghii	Rroxscaffold_6G00426920 Rroxscaffold_7G00183870 Rroxscaffold_7G00184150
rosa_rugosa	Rorug02G0615000
rosa_samantha	Rh3AG013800 Rh3BG013600 Rh3CG012700 Rh3DG014400 Rh6AG281200 Rh6BG281900 Rh6CG283600 Rh6DG276700
rosa_wichuraiana	Rw3G001020 Rw6G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
AasI	GACNNNNNNGTC	1 cut(s)	1031
Acc36I	ACCTGC	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	783
AciI	CCGC	2 cut(s)	111, 993
AcoI	YGGCCR	1 cut(s)	742
AcsI	RAATTY	2 cut(s)	362, 884
AcuI	CTGAAG	2 cut(s)	657, 801
AfaI	GTAC	3 cut(s)	601, 960, 979
AfiI	CCNNNNNNNGG	3 cut(s)	20, 783, 1046
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	86, 397, 797, 890
AhlI	ACTAGT	2 cut(s)	563, 866
AjnI	CCWGG	1 cut(s)	609
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	4 cut(s)	217, 221, 485, 584
AluI	AGCT	4 cut(s)	217, 221, 485, 584
Alw26I	GTCTC	3 cut(s)	112, 650, 795
AoxI	GGCC	2 cut(s)	518, 742
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	2 cut(s)	362, 884
AspLEI	GCGC	1 cut(s)	1007
AspS9I	GGNCC	3 cut(s)	400, 519, 1024
AsuHPI	GGTGA	2 cut(s)	833, 866
AsuNHI	GCTAGC	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	400, 1024
BalI	TGGCCA	1 cut(s)	744
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	2 cut(s)	608, 728
BciT130I	CCWGG	1 cut(s)	611
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	3 cut(s)	112, 650, 795
BcuI	ACTAGT	2 cut(s)	563, 866
BfaI	CTAG	5 cut(s)	218, 564, 597, 867, 903
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	258
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmcAI	AGTACT	2 cut(s)	601, 979
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	2 cut(s)	400, 1024
BmgT120I	GGNCC	3 cut(s)	400, 519, 1024
BmiI	GGNNCC	2 cut(s)	402, 1052
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	518
BmtI	GCTAGC	1 cut(s)	221
BoxI	GACNNNNGTC	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	1023
BpuEI	CTTGAG	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	650
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 783, 1046
Bse1I	ACTGG	1 cut(s)	1040
Bse3DI	GCAATG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	611
BseGI	GGATG	4 cut(s)	181, 619, 739, 1013
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	20, 783, 1046
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	4 cut(s)	105, 444, 738, 1044
BseNI	ACTGG	1 cut(s)	1040
BseXI	GCAGC	1 cut(s)	472
BsgI	GTGCAG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	520, 744
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	151, 517
BslI	CCNNNNNNNGG	3 cut(s)	20, 783, 1046
BsmAI	GTCTC	3 cut(s)	112, 650, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmI	GAATGC	2 cut(s)	351, 787
BsnI	GGCC	2 cut(s)	520, 744
Bso31I	GGTCTC	1 cut(s)	650
Bsp143I	GATC	4 cut(s)	41, 61, 460, 856
BspACI	CCGC	2 cut(s)	111, 993
BspANI	GGCC	2 cut(s)	520, 744
BspCNI	CTCAG	4 cut(s)	106, 445, 737, 1043
BspHI	TCATGA	2 cut(s)	525, 859
BspLI	GGNNCC	2 cut(s)	402, 1052
BspMI	ACCTGC	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	1040
BssMI	GATC	4 cut(s)	41, 61, 460, 856
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	78, 914, 982
Bst6I	CTCTTC	3 cut(s)	271, 300, 966
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	4 cut(s)	114, 453, 724, 1030
BstF5I	GGATG	4 cut(s)	181, 619, 739, 1013
BstHHI	GCGC	1 cut(s)	1007
BstKTI	GATC	4 cut(s)	44, 64, 463, 859
BstMAI	GTCTC	3 cut(s)	112, 650, 795
BstMBI	GATC	4 cut(s)	41, 61, 460, 856
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 485
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	520, 744
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	4 cut(s)	181, 619, 739, 1013
BtsIMutI	CAGTG	1 cut(s)	919
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	219
CciI	TCATGA	2 cut(s)	525, 859
CfoI	GCGC	1 cut(s)	1007
Cfr13I	GGNCC	3 cut(s)	400, 519, 1024
Csp6I	GTAC	3 cut(s)	600, 959, 978
CviAII	CATG	7 cut(s)	65, 122, 350, 490, 526, 716, 860
CviQI	GTAC	3 cut(s)	600, 959, 978
DdeI	CTNAG	4 cut(s)	114, 453, 724, 1030
DpnI	GATC	4 cut(s)	43, 63, 462, 858
DpnII	GATC	4 cut(s)	41, 61, 460, 856
DrdI	GACNNNNNNGTC	1 cut(s)	1031
DseDI	GACNNNNNNGTC	1 cut(s)	1031
EaeI	YGGCCR	1 cut(s)	742
Eam1104I	CTCTTC	3 cut(s)	271, 300, 966
EarI	CTCTTC	3 cut(s)	271, 300, 966
EciI	GGCGGA	1 cut(s)	1008
Eco31I	GGTCTC	1 cut(s)	650
Eco47I	GGWCC	2 cut(s)	400, 1024
Eco57I	CTGAAG	2 cut(s)	657, 801
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	7 cut(s)	68, 125, 353, 493, 529, 719, 863
FaiI	YATR	9 cut(s)	66, 123, 285, 351, 491, 527, 717, 861, 945
FalI	AAGNNNNNCTT	2 cut(s)	883, 915
FatI	CATG	7 cut(s)	64, 121, 349, 489, 525, 715, 859
FauI	CCCGC	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	4 cut(s)	188, 626, 746, 1000
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	5 cut(s)	218, 564, 597, 867, 903
GlaI	GCGC	1 cut(s)	1006
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	1023
HaeIII	GGCC	2 cut(s)	520, 744
HapII	CCGG	2 cut(s)	151, 517
HhaI	GCGC	1 cut(s)	1007
Hin1II	CATG	7 cut(s)	68, 125, 353, 493, 529, 719, 863
Hin6I	GCGC	1 cut(s)	1005
HinP1I	GCGC	1 cut(s)	1005
HinfI	GANTC	6 cut(s)	179, 279, 773, 920, 1010, 1057
HpaII	CCGG	2 cut(s)	151, 517
HphI	GGTGA	2 cut(s)	833, 866
Hpy166II	GTNNAC	1 cut(s)	1024
Hpy188I	TCNGA	8 cut(s)	371, 625, 637, 676, 692, 700, 727, 1018
Hpy188III	TCNNGA	6 cut(s)	52, 245, 416, 526, 860, 903
Hpy8I	GTNNAC	1 cut(s)	1024
HpyAV	CCTTC	4 cut(s)	257, 263, 532, 926
HpyCH4III	ACNGT	3 cut(s)	78, 914, 982
HpyCH4IV	ACGT	3 cut(s)	534, 754, 804
HpyCH4V	TGCA	5 cut(s)	74, 194, 349, 479, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 485
HpyF3I	CTNAG	4 cut(s)	114, 453, 724, 1030
HpySE526I	ACGT	3 cut(s)	534, 754, 804
Hsp92II	CATG	7 cut(s)	68, 125, 353, 493, 529, 719, 863
HspAI	GCGC	1 cut(s)	1005
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	41, 61, 460, 856
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	5 cut(s)	218, 564, 597, 867, 903
MaeII	ACGT	3 cut(s)	534, 754, 804
MaeIII	GTNAC	7 cut(s)	124, 530, 538, 617, 821, 895, 1033
MalI	GATC	4 cut(s)	43, 63, 462, 858
MboI	GATC	4 cut(s)	41, 61, 460, 856
MboII	GAAGA	6 cut(s)	287, 288, 548, 807, 929, 983
MflI	RGATCY	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	744
MluCI	AATT	5 cut(s)	362, 446, 758, 884, 996
MluNI	TGGCCA	1 cut(s)	744
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	4 cut(s)	79, 499, 661, 1037
Mox20I	TGGCCA	1 cut(s)	744
Mph1103I	ATGCAT	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	744
MseI	TTAA	7 cut(s)	438, 548, 705, 761, 872, 984, 999
MslI	CAYNNNNRTG	2 cut(s)	162, 714
Msp20I	TGGCCA	1 cut(s)	744
MspA1I	CMGCKG	2 cut(s)	113, 584
MspI	CCGG	2 cut(s)	151, 517
MspR9I	CCNGG	1 cut(s)	611
Mva1269I	GAATGC	2 cut(s)	351, 787
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	2 cut(s)	258, 485
NdeII	GATC	4 cut(s)	41, 61, 460, 856
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	7 cut(s)	68, 125, 353, 493, 529, 719, 863
NlaIV	GGNNCC	2 cut(s)	402, 1052
NmuCI	GTSAC	4 cut(s)	124, 530, 821, 1033
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	125
OliI	CACNNNNGTG	1 cut(s)	162
PagI	TCATGA	2 cut(s)	525, 859
PaqCI	CACCTGC	1 cut(s)	301
PciI	ACATGT	1 cut(s)	121
PctI	GAATGC	2 cut(s)	351, 787
PfeI	GAWTC	5 cut(s)	179, 773, 920, 1010, 1057
PflMI	CCANNNNNTGG	1 cut(s)	783
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	400
PscI	ACATGT	1 cut(s)	121
PshAI	GACNNNNGTC	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	2 cut(s)	402, 1052
PspPI	GGNCC	3 cut(s)	400, 519, 1024
PspPPI	RGGWCCY	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	601, 960, 979
RsaNI	GTAC	3 cut(s)	600, 959, 978
RseI	CAYNNNNRTG	2 cut(s)	162, 714
SaqAI	TTAA	7 cut(s)	438, 548, 705, 761, 872, 984, 999
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	4 cut(s)	41, 61, 460, 856
Sau96I	GGNCC	3 cut(s)	400, 519, 1024
ScaI	AGTACT	2 cut(s)	601, 979
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	611
SfaNI	GCATC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	400, 1024
SmiMI	CAYNNNNRTG	2 cut(s)	162, 714
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
SpeI	ACTAGT	2 cut(s)	563, 866
Sse9I	AATT	5 cut(s)	362, 446, 758, 884, 996
SsiI	CCGC	2 cut(s)	111, 993
SspMI	CTAG	5 cut(s)	218, 564, 597, 867, 903
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	78, 914, 982
TaiI	ACGT	3 cut(s)	537, 757, 807
TaqI	TCGA	2 cut(s)	302, 923
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	362, 446, 758, 884, 996
TatI	WGTACW	2 cut(s)	599, 977
TfiI	GAWTC	5 cut(s)	179, 773, 920, 1010, 1057
Tru1I	TTAA	7 cut(s)	438, 548, 705, 761, 872, 984, 999
Tru9I	TTAA	7 cut(s)	438, 548, 705, 761, 872, 984, 999
TscAI	CASTG	1 cut(s)	919
TseFI	GTSAC	4 cut(s)	124, 530, 821, 1033
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	4 cut(s)	124, 530, 821, 1033
TspDTI	ATGAA	4 cut(s)	110, 192, 514, 780
TspGWI	ACGGA	3 cut(s)	200, 230, 942
TspRI	CASTG	1 cut(s)	919
Van91I	CCANNNNNTGG	1 cut(s)	783
VpaK11BI	GGWCC	2 cut(s)	400, 1024
XapI	RAATTY	2 cut(s)	362, 884
XbaI	TCTAGA	1 cut(s)	902
XceI	RCATGY	1 cut(s)	125
XspI	CTAG	5 cut(s)	218, 564, 597, 867, 903
ZrmI	AGTACT	2 cut(s)	601, 979
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.