RchiOBHm_Chr6g0284981
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
48300008 .. 48302453
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25560

Sequence Viewer

Length: 1296 bp
ATGAGTTGCTTTTCGTGCTTTTCATCTCATGAAAAGAAAGCATCTGCCAAAAGATCAAATAGTGGGAAGAGAGAACAACTTTTGACTCCTTCCGAAAGGGAACCGACTAATAATGTAGCACCTGCTGTGCCTAAACAAGCACCGGCTGCTGAGCAAACCACAGACAATAAGAATGCCAATGCAAATGCCAATAAAGATGGGGGTCATAATATTGCTGCACAAACTTTCACCTTCCGGGAACTGGCAACAGCAACAAAGAACTTCCGACAAGAATGTCTGATAGGCGAGGGCGGATTTGGAAGAGTTTATAAGGGGAAGCTTGAAACAACAGAACAGATTGTAGCTGTGAAGCAACTTGATAGGAATGGCTTGCAAGGCAATAGAGAGTTCCTTGTTGAGGTGTTGATGTTGAGCCTCTTACACCATGACAATTTAGTGAATCTTATCGGATATTGCGCTGATGGTGATCAGAGACTTCTGGTGTATGAATACATGCCTTTGGGATCTTTGGAAGACCATTTATTAGACCTCCCATCAGAGCAAAAGCCATTAGATTGGTTCAAGAGAATGAAGATAGCTCTAGGAGCTGCCAAGGGTCTAGAATACTTGCACGATAAGGCGAATCCTCCTGTTATTTACCGCGATTTAAAATCTTCAAACATCTTATTAGATGGCCATTTCAATGCAAAACTCTCTGATTTCGGGCTAGCTAAGCTTGGACCGGTTGGAGACAAGACACATGTATCTTCAAGAATAATGGGCACGTACGGGTATTGTGCCCCAGAGTACCAAAGAACAGGCCAACTGACTGTTAAGTCGGATGTGTACAGTTTTGGAGTTGTGTTGTTAGAACTGATCACCGGAAGAAGAGCAATTGACACCACAAGGCCAACAAGGGAGCAAAATCTAGTGACTTGGGCAGAGCCAGTATTTAAGGATCCTCATAAGTTTCCGGAATTAGCTGATCCACTTCTTCAAGGAGACTATCCGGTAAGAGCATTGAATCAAGCAGTTGCAGTTGCAGCAATGTGTCTTCATGACGAAGCCCCGGCTCGCCCCTTAATGAGTGATGTGGTCAGTGCTCTCAGTTTCCTTGGGACTGATGATGACGAAAGTGTTCCCGGCTCGCCTCTACAATCTGATGATGAAGAAATGTCCAACGTAGAAGATGAGAATCCAAAGGATGAAGAAACTGTAAGGGAACGCGAACGAGCTGTGGCAGAAGCCATAGAATGGGGCTCAACGTCAAGGAGCAATGCAGCCACGTCAAAGTTGGAAAGTACTGCTTCATTGTAA

Protein Analysis

431

Amino Acids

47.48

Weight (kDa)

5.3

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 90 - 301 2e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 92 - 303 9.1e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AarI CACCTGC 1 cut(s) 130
AasI GACNNNNNNGTC 2 cut(s) 273, 814
Acc36I ACCTGC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 1233
AccII CGCG 2 cut(s) 642, 1206
AccIII TCCGGA 1 cut(s) 952
AciI CCGC 2 cut(s) 291, 640
AclWI GGATC 4 cut(s) 511, 932, 945, 959
AcoI YGGCCR 1 cut(s) 673
AfaI GTAC 4 cut(s) 767, 788, 827, 1282
AfiI CCNNNNNNNGG 3 cut(s) 241, 397, 1233
AflIII ACRYGT 1 cut(s) 739
AgeI ACCGGT 1 cut(s) 721
AgsI TTSAA 7 cut(s) 323, 562, 657, 682, 750, 977, 1003
AjiI CACGTC 1 cut(s) 1266
AluBI AGCT 8 cut(s) 319, 344, 578, 587, 710, 715, 962, 1214
AluI AGCT 8 cut(s) 319, 344, 578, 587, 710, 715, 962, 1214
Alw21I GWGCWC 1 cut(s) 1084
Alw26I GTCTC 3 cut(s) 466, 723, 975
AlwI GGATC 4 cut(s) 511, 932, 945, 959
Aor13HI TCCGGA 1 cut(s) 952
AoxI GGCC 3 cut(s) 673, 799, 887
ApeKI GCWGC 5 cut(s) 146, 215, 587, 1022, 1259
AsiGI ACCGGT 1 cut(s) 721
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 3 cut(s) 236, 1049, 1122
AsuHPI GGTGA 3 cut(s) 220, 476, 850
AsuNHI GCTAGC 1 cut(s) 706
AvaII GGWCC 1 cut(s) 719
BaeGI GKGCMC 2 cut(s) 764, 781
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
BalI TGGCCA 1 cut(s) 675
BamHI GGATCC 1 cut(s) 937
BanII GRGCYC 1 cut(s) 1241
BbsI GAAGAC 2 cut(s) 519, 1025
Bbv12I GWGCWC 1 cut(s) 1084
BbvI GCAGC 5 cut(s) 133, 202, 574, 1034, 1271
BccI CCATC 4 cut(s) 191, 455, 541, 665
BclI TGATCA 2 cut(s) 466, 855
BcnI CCSGG 3 cut(s) 236, 1049, 1122
BcoDI GTCTC 3 cut(s) 466, 723, 975
BfaI CTAG 4 cut(s) 581, 599, 707, 908
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 5 cut(s) 147, 216, 588, 1023, 1260
BlpI GCTNAGC 2 cut(s) 150, 711
BlsI GCNGC 5 cut(s) 148, 217, 589, 1024, 1261
BmcAI AGTACT 1 cut(s) 1282
Bme1390I CCNGG 3 cut(s) 236, 1049, 1122
Bme18I GGWCC 1 cut(s) 719
BmgBI CACGTC 1 cut(s) 1266
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 2 cut(s) 102, 939
BmrFI CCNGG 3 cut(s) 236, 1049, 1122
BmsI GCATC 1 cut(s) 50
BmtI GCTAGC 1 cut(s) 710
BpiI GAAGAC 2 cut(s) 519, 1025
Bpu1102I GCTNAGC 2 cut(s) 150, 711
BpuMI CCSGG 3 cut(s) 236, 1049, 1122
BsaAI YACGTR 1 cut(s) 765
BsaBI GATNNNNATC 2 cut(s) 465, 1173
BsaJI CCNNGG 3 cut(s) 591, 1047, 1093
BsaWI WCCGGW 4 cut(s) 721, 860, 952, 988
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 397, 1233
Bse118I RCCGGY 2 cut(s) 142, 721
Bse1I ACTGG 2 cut(s) 246, 926
Bse3DI GCAATG 2 cut(s) 1032, 1261
Bse8I GATNNNNATC 2 cut(s) 465, 1173
BseAI TCCGGA 1 cut(s) 952
BseDI CCNNGG 3 cut(s) 591, 1047, 1093
BseGI GGATG 2 cut(s) 826, 1189
BseJI GATNNNNATC 2 cut(s) 465, 1173
BseLI CCNNNNNNNGG 3 cut(s) 241, 397, 1233
BseMI GCAATG 2 cut(s) 1032, 1261
BseMII CTCAG 2 cut(s) 141, 1099
BseNI ACTGG 2 cut(s) 246, 926
BseSI GKGCMC 2 cut(s) 764, 781
BseXI GCAGC 5 cut(s) 133, 202, 574, 1034, 1271
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 2 cut(s) 642, 1206
BshFI GGCC 3 cut(s) 675, 801, 889
BshTI ACCGGT 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 1084
BsiSI CCGG 8 cut(s) 143, 235, 722, 861, 953, 989, 1049, 1122
BsiWI CGTACG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 1111
BslI CCNNNNNNNGG 3 cut(s) 241, 397, 1233
BsmAI GTCTC 3 cut(s) 466, 723, 975
BsmFI GGGAC 1 cut(s) 1111
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 3 cut(s) 675, 801, 889
Bsp1286I GDGCHC 4 cut(s) 764, 781, 1084, 1241
Bsp13I TCCGGA 1 cut(s) 952
Bsp1407I TGTACA 1 cut(s) 825
Bsp143I GATC 6 cut(s) 53, 466, 503, 855, 937, 964
Bsp1720I GCTNAGC 2 cut(s) 150, 711
BspACI CCGC 2 cut(s) 291, 640
BspANI GGCC 3 cut(s) 675, 801, 889
BspCNI CTCAG 2 cut(s) 142, 1098
BspEI TCCGGA 1 cut(s) 952
BspFNI CGCG 2 cut(s) 642, 1206
BspHI TCATGA 2 cut(s) 28, 1036
BspLI GGNNCC 2 cut(s) 102, 939
BspMI ACCTGC 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 710
BspPI GGATC 4 cut(s) 511, 932, 945, 959
BspQI GCTCTTC 1 cut(s) 862
BsrDI GCAATG 2 cut(s) 1032, 1261
BsrFI RCCGGY 2 cut(s) 142, 721
BsrGI TGTACA 1 cut(s) 825
BsrI ACTGG 2 cut(s) 246, 926
BssAI RCCGGY 2 cut(s) 142, 721
BssECI CCNNGG 3 cut(s) 591, 1047, 1093
BssMI GATC 6 cut(s) 53, 466, 503, 855, 937, 964
BssT1I CCWWGG 2 cut(s) 591, 1093
Bst4CI ACNGT 3 cut(s) 811, 830, 1195
Bst6I CTCTTC 3 cut(s) 62, 295, 862
BstAPI GCANNNNNTGC 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 825
BstBAI YACGTR 1 cut(s) 765
BstC8I GCNNGC 4 cut(s) 371, 708, 1054, 1127
BstDEI CTNAG 3 cut(s) 150, 711, 1085
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 2 cut(s) 826, 1189
BstFNI CGCG 2 cut(s) 642, 1206
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 6 cut(s) 56, 469, 506, 858, 940, 967
BstMAI GTCTC 3 cut(s) 466, 723, 975
BstMBI GATC 6 cut(s) 53, 466, 503, 855, 937, 964
BstMWI GCNNNNNNNGC 6 cut(s) 15, 146, 375, 584, 712, 1022
BstNSI RCATGY 2 cut(s) 496, 743
BstSCI CCNGG 3 cut(s) 234, 1047, 1120
BstSLI GKGCMC 2 cut(s) 764, 781
BstUI CGCG 2 cut(s) 642, 1206
BstV1I GCAGC 5 cut(s) 133, 202, 574, 1034, 1271
BstV2I GAAGAC 2 cut(s) 519, 1025
BstX2I RGATCY 2 cut(s) 503, 937
BstXI CCANNNNNNTGG 1 cut(s) 555
BstYI RGATCY 2 cut(s) 503, 937
BsuRI GGCC 3 cut(s) 675, 801, 889
BtrI CACGTC 1 cut(s) 1266
BtsCI GGATG 2 cut(s) 826, 1189
BtsIMutI CAGTG 1 cut(s) 1084
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 371, 708, 1054, 1127
CciI TCATGA 2 cut(s) 28, 1036
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 2 cut(s) 142, 721
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 4 cut(s) 766, 787, 826, 1281
CspAI ACCGGT 1 cut(s) 721
CviAII CATG 5 cut(s) 29, 425, 493, 740, 1037
CviQI GTAC 4 cut(s) 766, 787, 826, 1281
DdeI CTNAG 3 cut(s) 150, 711, 1085
DpnI GATC 6 cut(s) 55, 468, 505, 857, 939, 966
DpnII GATC 6 cut(s) 53, 466, 503, 855, 937, 964
DraI TTTAAA 1 cut(s) 648
DrdI GACNNNNNNGTC 2 cut(s) 273, 814
DseDI GACNNNNNNGTC 2 cut(s) 273, 814
EaeI YGGCCR 1 cut(s) 673
Eam1104I CTCTTC 3 cut(s) 62, 295, 862
EarI CTCTTC 3 cut(s) 62, 295, 862
EciI GGCGGA 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 591, 1093
Eco24I GRGCYC 1 cut(s) 1241
Eco47I GGWCC 1 cut(s) 719
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoT14I CCWWGG 2 cut(s) 591, 1093
EcoT38I GRGCYC 1 cut(s) 1241
ErhI CCWWGG 2 cut(s) 591, 1093
FaeI CATG 5 cut(s) 32, 428, 496, 743, 1040
FalI AAGNNNNNCTT 1 cut(s) 1270
FaqI GGGAC 1 cut(s) 1111
FatI CATG 5 cut(s) 28, 424, 492, 739, 1036
FbaI TGATCA 2 cut(s) 466, 855
Fnu4HI GCNGC 5 cut(s) 147, 216, 588, 1023, 1260
FokI GGATG 2 cut(s) 833, 1196
FriOI GRGCYC 1 cut(s) 1241
Fsp4HI GCNGC 5 cut(s) 147, 216, 588, 1023, 1260
FspBI CTAG 4 cut(s) 581, 599, 707, 908
GlaI GCGC 1 cut(s) 457
GluI GCNGC 5 cut(s) 147, 216, 588, 1023, 1260
HaeIII GGCC 3 cut(s) 675, 801, 889
HapII CCGG 8 cut(s) 143, 235, 722, 861, 953, 989, 1049, 1122
HhaI GCGC 1 cut(s) 458
Hin1II CATG 5 cut(s) 32, 428, 496, 743, 1040
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HindIII AAGCTT 2 cut(s) 317, 713
HinfI GANTC 5 cut(s) 85, 439, 622, 1003, 1174
HpaII CCGG 8 cut(s) 143, 235, 722, 861, 953, 989, 1049, 1122
HphI GGTGA 3 cut(s) 220, 476, 850
Hpy166II GTNNAC 1 cut(s) 826
Hpy188I TCNGA 9 cut(s) 94, 266, 279, 449, 471, 538, 697, 820, 1141
Hpy188III TCNNGA 6 cut(s) 29, 562, 599, 750, 953, 1037
Hpy8I GTNNAC 1 cut(s) 826
HpyAV CCTTC 2 cut(s) 99, 241
HpyCH4III ACNGT 3 cut(s) 811, 830, 1195
HpyCH4IV ACGT 4 cut(s) 764, 1161, 1244, 1265
HpyCH4V TGCA 8 cut(s) 182, 218, 373, 610, 686, 1016, 1022, 1259
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 146, 375, 584, 712, 1022
HpyF3I CTNAG 3 cut(s) 150, 711, 1085
HpySE526I ACGT 4 cut(s) 764, 1161, 1244, 1265
Hsp92II CATG 5 cut(s) 32, 428, 496, 743, 1040
HspAI GCGC 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 952
Ksp22I TGATCA 2 cut(s) 466, 855
Kzo9I GATC 6 cut(s) 53, 466, 503, 855, 937, 964
LguI GCTCTTC 1 cut(s) 862
LmnI GCTCC 3 cut(s) 584, 898, 1251
Lsp1109I GCAGC 5 cut(s) 133, 202, 574, 1034, 1271
LweI GCATC 1 cut(s) 50
MaeI CTAG 4 cut(s) 581, 599, 707, 908
MaeII ACGT 4 cut(s) 764, 1161, 1244, 1265
MaeIII GTNAC 1 cut(s) 910
MalI GATC 6 cut(s) 55, 468, 505, 857, 939, 966
MboI GATC 6 cut(s) 53, 466, 503, 855, 937, 964
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 2 cut(s) 503, 937
MhlI GDGCHC 4 cut(s) 764, 781, 1084, 1241
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 3 cut(s) 430, 873, 956
MluNI TGGCCA 1 cut(s) 675
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 5 cut(s) 289, 706, 798, 1182, 1254
MnlI CCTC 7 cut(s) 280, 391, 425, 539, 636, 951, 1140
Mox20I TGGCCA 1 cut(s) 675
MroI TCCGGA 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 1116
MscI TGGCCA 1 cut(s) 675
MseI TTAA 4 cut(s) 647, 813, 933, 1061
MslI CAYNNNNRTG 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 675
MspI CCGG 8 cut(s) 143, 235, 722, 861, 953, 989, 1049, 1122
MspR9I CCNGG 3 cut(s) 236, 1049, 1122
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 178
MvnI CGCG 2 cut(s) 642, 1206
MwoI GCNNNNNNNGC 6 cut(s) 15, 146, 375, 584, 712, 1022
NciI CCSGG 3 cut(s) 236, 1049, 1122
NdeII GATC 6 cut(s) 53, 466, 503, 855, 937, 964
NheI GCTAGC 1 cut(s) 706
NlaIII CATG 5 cut(s) 32, 428, 496, 743, 1040
NlaIV GGNNCC 2 cut(s) 102, 939
NmuCI GTSAC 1 cut(s) 910
NspI RCATGY 2 cut(s) 496, 743
PagI TCATGA 2 cut(s) 28, 1036
PaqCI CACCTGC 1 cut(s) 130
PciI ACATGT 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 862
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 4 cut(s) 439, 622, 1003, 1174
Pfl23II CGTACG 1 cut(s) 765
PflMI CCANNNNNTGG 1 cut(s) 1233
PfoI TCCNGGA 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 721
PkrI GCNGC 5 cut(s) 148, 217, 589, 1024, 1261
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 765
PscI ACATGT 1 cut(s) 739
PsiI TTATAA 1 cut(s) 309
PspLI CGTACG 1 cut(s) 765
PspN4I GGNNCC 2 cut(s) 102, 939
PspPI GGNCC 1 cut(s) 719
PsuI RGATCY 2 cut(s) 503, 937
RsaI GTAC 4 cut(s) 767, 788, 827, 1282
RsaNI GTAC 4 cut(s) 766, 787, 826, 1281
RseI CAYNNNNRTG 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 862
SaqAI TTAA 4 cut(s) 647, 813, 933, 1061
SatI GCNGC 5 cut(s) 147, 216, 588, 1023, 1260
Sau3AI GATC 6 cut(s) 53, 466, 503, 855, 937, 964
Sau96I GGNCC 1 cut(s) 719
ScaI AGTACT 1 cut(s) 1282
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 3 cut(s) 236, 1049, 1122
SduI GDGCHC 4 cut(s) 764, 781, 1084, 1241
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 681
Sse9I AATT 3 cut(s) 430, 873, 956
SsiI CCGC 2 cut(s) 291, 640
SspI AATATT 1 cut(s) 211
SspMI CTAG 4 cut(s) 581, 599, 707, 908
StyD4I CCNGG 3 cut(s) 234, 1047, 1120
StyI CCWWGG 2 cut(s) 591, 1093
TaaI ACNGT 3 cut(s) 811, 830, 1195
TaiI ACGT 4 cut(s) 767, 1164, 1247, 1268
TasI AATT 3 cut(s) 430, 873, 956
TatI WGTACW 2 cut(s) 825, 1280
TfiI GAWTC 4 cut(s) 439, 622, 1003, 1174
Tru1I TTAA 4 cut(s) 647, 813, 933, 1061
Tru9I TTAA 4 cut(s) 647, 813, 933, 1061
TscAI CASTG 1 cut(s) 1084
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 5 cut(s) 146, 215, 587, 1022, 1259
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 8 cut(s) 12, 45, 501, 584, 1025, 1161, 1200, 1278
TspRI CASTG 1 cut(s) 1084
Van91I CCANNNNNTGG 1 cut(s) 1233
VpaK11BI GGWCC 1 cut(s) 719
XagI CCTNNNNNAGG 1 cut(s) 395
XbaI TCTAGA 1 cut(s) 598
XceI RCATGY 2 cut(s) 496, 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 1270
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 4 cut(s) 581, 599, 707, 908
ZrmI AGTACT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.