Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

9801169 .. 9804282

Gene Structure 3114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGATTTTTCTGATGAAGACGACGACGAAAACTGTTTTGGTTCTCGTTTCAACGACGGTGTAAATGAAGAAGAAGAAGACGAAGAGGGTTTTGTGTTTAACGACGATGTTGAAGAGAATGAAGAAGAAGAGGGTTTTGCGTCTGATTTCTATAAGGCTGGTTCTGATTGGTCTTGTTTAGTGGAAGATGAAGAGACTGTTTCTTCTTCTGTGAAGAAGATGAAACAGTCGAACTTGTTTCAGATTTGGGGTTTACAAGAGAATTCTCCTGATACAACGAAGAAGATGAAACAAACTGATTTGTTTCAGAGTTGGGGTTTACAAAAGCCTTCTCCTTTCACTTCACCTGCTTCGAATTCGGCGAAGAAGACGACGAGTGCTCTTGGAAAAAGGCGTAGAGACTCTTCGTTTAGCAATGACTCGCCTCGACCATGTCCATTTTACAAGAAACTTCCAGGAACACCGTTCACTGTGGATGCTTTTCGCTATGGTTGTGTTCAAGGATGTTCTGCTTATTTCCTTACTCATTTTCACGCTGATCATTACATTGGTCTCACTAAAGCTTGGTCTCATGGTCCTATTTACTGCTCCTCTCTCACTAGTCGTCTTCTTAGACTTAGTCTCTCTGTTAATCCCTCGTCTATTCATCCATTGGAGCTAGACGTTGAGTACACTATTAATGGGATTAAAGTCACTTTAATTGAAGCTAATCATTGCCCTGGTGCTGCTCTTATTCACTTTCGTCTCTTAGATGGAACATGTTATCTGCATACCGGAGATTTCAGGGCTTCTAAACAGATGCAAACGCATCCTCTCCTCTTTAACCAACGAGTTCATGTTCTGTATTTGGATACAACATATTGCAATCCGAGATACAAATTCCCTTCTAAAGAAGATGTGTTAAGTTATGTTGTGAGAATCACAAAGGATTTCCTCAGGAAGCAACCGAAGACTCTGATTGTGGTTGGTTCTTACAGCATTGGAAAAGAATGTGTTTATCTTGCTATTGCCAAAGCTCTTGGGGTTAAGATATTTGCAAATGCTTCAAGAAGACGAATACTGCAATCTTTTGGTTGGGATGATATTTCGAAGAATCTTTCTACAGATGGGAAAGCCACATGTCTTCATGTTCTGCCTATGTCGTCATTGAAAGTTGAAAGACTCGATGAACACTTGAAGATTTATAGAGAACAGTATGGAGCAGTTTTGGCATTTAGGCCCACAGGTTGGACTTACTCCGAGAAGATAGGTGAACACCTTGATCTGATAAAACCAACTTCAAGGGGAAAAATCACCATTTATGGGGTGCCATATAGTGAGCATTCAAGCTTCACAGAGCTTCGTGAGTTTGTTCAATTCTTAAGGCCTGATAAGATTATTCCTACGGTGAACAATGGAAATGCTGGAACTCGCGAGAAAATGCAATCATGTTTCAGAGAATGGCTCAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL

Protein Analysis

484

Amino Acids

55.16

Weight (kDa)

6.55

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DRMBL	PF07522	361 - 466	4e-38	DNA repair metallo-beta-lactamase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	1306
AccB7I	CCANNNNNTGG	1 cut(s)	1227
AccII	CGCG	1 cut(s)	1413
AcsI	RAATTY	3 cut(s)	262, 355, 878
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	2 cut(s)	1227, 1302
AflII	CTTAAG	1 cut(s)	1360
AflIII	ACRYGT	2 cut(s)	758, 1118
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	2 cut(s)	454, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	6 cut(s)	563, 658, 707, 1016, 1329, 1339
AluI	AGCT	6 cut(s)	563, 658, 707, 1016, 1329, 1339
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	6 cut(s)	188, 393, 557, 573, 626, 749
AlwNI	CAGNNNCTG	1 cut(s)	1452
AoxI	GGCC	2 cut(s)	1217, 1364
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	3 cut(s)	262, 355, 878
AseI	ATTAAT	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	575, 1218
AsuHPI	GGTGA	4 cut(s)	336, 1262, 1285, 1399
AsuII	TTCGAA	2 cut(s)	353, 1088
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	935
BanI	GGYRCC	1 cut(s)	1306
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
BbsI	GAAGAC	7 cut(s)	24, 84, 374, 599, 956, 1057, 1115
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	2 cut(s)	746, 1100
BciT130I	CCWGG	2 cut(s)	456, 720
BciVI	GTATCC	1 cut(s)	844
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	6 cut(s)	188, 393, 557, 573, 626, 749
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	2 cut(s)	600, 659
BfmI	CTRYAG	1 cut(s)	1101
BfrI	CTTAAG	1 cut(s)	1360
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	844
BisI	GCNGC	1 cut(s)	726
BlsI	GCNGC	1 cut(s)	727
Bme1390I	CCNGG	2 cut(s)	456, 720
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	575, 1218
BmiI	GGNNCC	1 cut(s)	1308
BmrFI	CCNGG	2 cut(s)	456, 720
BmsI	GCATC	3 cut(s)	466, 789, 817
BpiI	GAAGAC	7 cut(s)	24, 84, 374, 599, 956, 1057, 1115
BplI	GAGNNNNNCTC	1 cut(s)	1428
Bpu14I	TTCGAA	2 cut(s)	353, 1088
BsaI	GGTCTC	2 cut(s)	557, 573
BsaJI	CCNNGG	1 cut(s)	718
BsaWI	WCCGGW	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	2 cut(s)	1227, 1302
Bse21I	CCTNAGG	1 cut(s)	935
Bse3DI	GCAATG	2 cut(s)	421, 712
BseBI	CCWGG	2 cut(s)	456, 720
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	5 cut(s)	481, 509, 646, 808, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	1227, 1302
BseMI	GCAATG	2 cut(s)	421, 712
BseMII	CTCAG	1 cut(s)	949
BseRI	GAGGAG	2 cut(s)	580, 806
BseXI	GCAGC	1 cut(s)	712
Bsh1236I	CGCG	1 cut(s)	1413
BshFI	GGCC	2 cut(s)	1219, 1366
BshNI	GGYRCC	1 cut(s)	1306
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	774
BslI	CCNNNNNNNGG	2 cut(s)	1227, 1302
BsmAI	GTCTC	6 cut(s)	188, 393, 557, 573, 626, 749
BsmBI	CGTCTC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	1321
BsnI	GGCC	2 cut(s)	1219, 1366
Bso31I	GGTCTC	2 cut(s)	557, 573
Bsp119I	TTCGAA	2 cut(s)	353, 1088
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	538, 1261
Bsp68I	TCGCGA	1 cut(s)	1413
BspANI	GGCC	2 cut(s)	1219, 1366
BspCNI	CTCAG	1 cut(s)	948
BspFNI	CGCG	1 cut(s)	1413
BspLI	GGNNCC	1 cut(s)	1308
BspMI	ACCTGC	1 cut(s)	355
BspT104I	TTCGAA	2 cut(s)	353, 1088
BspT107I	GGYRCC	1 cut(s)	1306
BspTI	CTTAAG	1 cut(s)	1360
BspTNI	GGTCTC	2 cut(s)	557, 573
BsrDI	GCAATG	2 cut(s)	421, 712
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	2 cut(s)	538, 1261
Bst2UI	CCWGG	2 cut(s)	456, 720
Bst4CI	ACNGT	8 cut(s)	35, 59, 199, 228, 465, 472, 1194, 1387
Bst6I	CTCTTC	5 cut(s)	78, 108, 123, 186, 409
BstAFI	CTTAAG	1 cut(s)	1360
BstBI	TTCGAA	2 cut(s)	353, 1088
BstDEI	CTNAG	5 cut(s)	611, 617, 748, 935, 1445
BstF5I	GGATG	5 cut(s)	481, 509, 646, 808, 1084
BstFNI	CGCG	1 cut(s)	1413
BstKTI	GATC	2 cut(s)	541, 1264
BstMAI	GTCTC	6 cut(s)	188, 393, 557, 573, 626, 749
BstMBI	GATC	2 cut(s)	538, 1261
BstMWI	GCNNNNNNNGC	1 cut(s)	1208
BstNI	CCWGG	2 cut(s)	456, 720
BstNSI	RCATGY	2 cut(s)	762, 1122
BstSCI	CCNGG	2 cut(s)	454, 718
BstSFI	CTRYAG	1 cut(s)	1101
BstUI	CGCG	1 cut(s)	1413
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	7 cut(s)	24, 84, 374, 599, 956, 1057, 1115
Bsu36I	CCTNAGG	1 cut(s)	935
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	2 cut(s)	1219, 1366
BtsCI	GGATG	5 cut(s)	481, 509, 646, 808, 1084
BtsIMutI	CAGTG	1 cut(s)	468
BtuMI	TCGCGA	1 cut(s)	1413
BveI	ACCTGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	1452
Cfr13I	GGNCC	2 cut(s)	575, 1218
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	7 cut(s)	432, 572, 759, 836, 1119, 1127, 1428
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	5 cut(s)	611, 617, 748, 935, 1445
DpnI	GATC	2 cut(s)	540, 1263
DpnII	GATC	2 cut(s)	538, 1261
Eam1104I	CTCTTC	5 cut(s)	78, 108, 123, 186, 409
EarI	CTCTTC	5 cut(s)	78, 108, 123, 186, 409
Eco147I	AGGCCT	1 cut(s)	1366
Eco31I	GGTCTC	2 cut(s)	557, 573
Eco47I	GGWCC	1 cut(s)	575
Eco81I	CCTNAGG	1 cut(s)	935
EcoRI	GAATTC	2 cut(s)	262, 355
EcoRII	CCWGG	2 cut(s)	454, 718
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	7 cut(s)	435, 575, 762, 839, 1122, 1130, 1431
FatI	CATG	7 cut(s)	431, 571, 758, 835, 1118, 1126, 1427
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	726
FokI	GGATG	5 cut(s)	488, 516, 633, 795, 1091
Fsp4HI	GCNGC	1 cut(s)	726
FspBI	CTAG	2 cut(s)	600, 659
GluI	GCNGC	1 cut(s)	726
HaeIII	GGCC	2 cut(s)	1219, 1366
HapII	CCGG	1 cut(s)	774
HgaI	GACGC	1 cut(s)	129
Hin1II	CATG	7 cut(s)	435, 575, 762, 839, 1122, 1130, 1431
HindIII	AAGCTT	2 cut(s)	561, 1327
HinfI	GANTC	6 cut(s)	401, 419, 918, 952, 1093, 1161
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	4 cut(s)	336, 1262, 1285, 1399
Hpy166II	GTNNAC	6 cut(s)	254, 320, 468, 672, 1253, 1390
Hpy188III	TCNNGA	5 cut(s)	269, 937, 1047, 1343, 1412
Hpy8I	GTNNAC	6 cut(s)	254, 320, 468, 672, 1253, 1390
Hpy99I	CGWCG	5 cut(s)	26, 29, 59, 107, 376
HpyAV	CCTTC	2 cut(s)	339, 894
HpyCH4III	ACNGT	8 cut(s)	35, 59, 199, 228, 465, 472, 1194, 1387
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	6 cut(s)	769, 802, 864, 1037, 1063, 1423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1208
HpyF3I	CTNAG	5 cut(s)	611, 617, 748, 935, 1445
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	7 cut(s)	435, 575, 762, 839, 1122, 1130, 1431
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	538, 1261
LmnI	GCTCC	3 cut(s)	593, 655, 1199
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	3 cut(s)	466, 789, 817
MaeI	CTAG	2 cut(s)	600, 659
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	2 cut(s)	540, 1263
MboI	GATC	2 cut(s)	538, 1261
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	5 cut(s)	262, 355, 699, 878, 1355
MlyI	GAGTC	4 cut(s)	395, 413, 946, 1155
MmeI	TCCRAC	1 cut(s)	1208
MnlI	CCTC	8 cut(s)	79, 124, 435, 601, 646, 822, 827, 944
MseI	TTAA	9 cut(s)	99, 630, 678, 687, 698, 822, 902, 1026, 1361
MspCI	CTTAAG	1 cut(s)	1360
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	2 cut(s)	456, 720
Mva1269I	GAATGC	1 cut(s)	1321
MvaI	CCWGG	2 cut(s)	456, 720
MvnI	CGCG	1 cut(s)	1413
MwoI	GCNNNNNNNGC	1 cut(s)	1208
NdeII	GATC	2 cut(s)	538, 1261
NlaIII	CATG	7 cut(s)	435, 575, 762, 839, 1122, 1130, 1431
NlaIV	GGNNCC	1 cut(s)	1308
NmuCI	GTSAC	1 cut(s)	691
NruI	TCGCGA	1 cut(s)	1413
NspI	RCATGY	2 cut(s)	762, 1122
NspV	TTCGAA	2 cut(s)	353, 1088
PaqCI	CACCTGC	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	1366
PciI	ACATGT	2 cut(s)	758, 1118
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PctI	GAATGC	1 cut(s)	1321
PfeI	GAWTC	2 cut(s)	918, 1093
PflFI	GACNNNGTC	2 cut(s)	432, 618
PflMI	CCANNNNNTGG	1 cut(s)	1227
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	727
PleI	GAGTC	4 cut(s)	395, 413, 946, 1155
PpsI	GAGTC	4 cut(s)	395, 413, 946, 1155
PscI	ACATGT	2 cut(s)	758, 1118
PshBI	ATTAAT	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	454, 718
PspGI	CCWGG	2 cut(s)	454, 718
PspN4I	GGNNCC	1 cut(s)	1308
PspPI	GGNCC	2 cut(s)	575, 1218
PstNI	CAGNNNCTG	1 cut(s)	1452
PsyI	GACNNNGTC	2 cut(s)	432, 618
RruI	TCGCGA	1 cut(s)	1413
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
SaqAI	TTAA	9 cut(s)	99, 630, 678, 687, 698, 822, 902, 1026, 1361
SatI	GCNGC	1 cut(s)	726
Sau3AI	GATC	2 cut(s)	538, 1261
Sau96I	GGNCC	2 cut(s)	575, 1218
SchI	GAGTC	4 cut(s)	395, 413, 946, 1155
ScrFI	CCNGG	2 cut(s)	456, 720
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	3 cut(s)	466, 789, 817
SfcI	CTRYAG	1 cut(s)	1101
SfuI	TTCGAA	2 cut(s)	353, 1088
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	1360
SmoI	CTYRAG	1 cut(s)	1360
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	5 cut(s)	262, 355, 699, 878, 1355
SseBI	AGGCCT	1 cut(s)	1366
SspMI	CTAG	2 cut(s)	600, 659
StuI	AGGCCT	1 cut(s)	1366
StyD4I	CCNGG	2 cut(s)	454, 718
TaaI	ACNGT	8 cut(s)	35, 59, 199, 228, 465, 472, 1194, 1387
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	5 cut(s)	230, 353, 427, 1088, 1164
TasI	AATT	5 cut(s)	262, 355, 699, 878, 1355
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	2 cut(s)	918, 1093
Tru1I	TTAA	9 cut(s)	99, 630, 678, 687, 698, 822, 902, 1026, 1361
Tru9I	TTAA	9 cut(s)	99, 630, 678, 687, 698, 822, 902, 1026, 1361
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	691
TspRI	CASTG	1 cut(s)	475
Tth111I	GACNNNGTC	2 cut(s)	432, 618
Van91I	CCANNNNNTGG	1 cut(s)	1227
Vha464I	CTTAAG	1 cut(s)	1360
VpaK11BI	GGWCC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	3 cut(s)	262, 355, 878
XceI	RCATGY	2 cut(s)	762, 1122
XspI	CTAG	2 cut(s)	600, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.