Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Reverse (-)

32711960 .. 32712579

Gene Structure 620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAACTTGGGTGCGGCGGTGTCAATCTTACCGTGGAAGAGACCAAGGGAGAAGAGCTTAAAGGTGCATTCGATGGTGGAACTCAACAACCTTGGCGTGGGCAGATTCAATGGCGAGGACGGCCTCGGCATGGGCGGAGTCAATGGCGAGGACAGCCTTAGCGTCAGCGAAGGGGAATATGATGATGGGGGAGTTGGGGCCTTTGAGGGGAGATTCGGAGAAGGATTCGAGCTTGTTGAGGGCGGATTCACAAGCGGAGACCAAATGGGAGTGCTTGCGCTAGACATCGTTCTTGATGATTTTGTCAAGCTTGACATTTCTGAGTTGAGCAATGAAGAAAGACAGCTCCACACCAATGATTGTCTTGACAAACAAGAAAATCAACATCTAGATAAACAAAAGGGGACTGAAATTACTGATGACGCGATGGGCCCTCAAGTTTCTAGGCAAGTTGTTGAGTGGCTACGCAATCTTGGTTTAGAGAAGTATGAGGAAGTTTTTATGAGAGAAGAGATTGATTGGGATGTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

178

Amino Acids

19.64

Weight (kDa)

4.31

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	149 - 177	6.3e-06	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	425
AciI	CCGC	5 cut(s)	14, 17, 135, 243, 255
AfiI	CCNNNNNNNGG	3 cut(s)	97, 130, 207
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	4 cut(s)	57, 232, 310, 346
AluI	AGCT	4 cut(s)	57, 232, 310, 346
Alw26I	GTCTC	2 cut(s)	34, 252
AoxI	GGCC	3 cut(s)	121, 198, 430
ApaI	GGGCCC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	198, 430, 431
BaeGI	GKGCMC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	434
BccI	CCATC	3 cut(s)	67, 179, 421
BceAI	ACGGC	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	34, 252
BfaI	CTAG	3 cut(s)	281, 389, 444
BfmI	CTRYAG	1 cut(s)	530
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmgT120I	GGNCC	3 cut(s)	198, 430, 431
BmiI	GGNNCC	2 cut(s)	199, 432
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	420
BsaI	GGTCTC	2 cut(s)	34, 252
BsaJI	CCNNGG	4 cut(s)	32, 44, 91, 124
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 130, 207
Bse3DI	GCAATG	1 cut(s)	337
BseDI	CCNNGG	4 cut(s)	32, 44, 91, 124
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	3 cut(s)	97, 130, 207
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	123, 200, 432
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	3 cut(s)	97, 130, 207
BsmAI	GTCTC	2 cut(s)	34, 252
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	123, 200, 432
Bso31I	GGTCTC	2 cut(s)	34, 252
Bsp120I	GGGCCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	434
BspACI	CCGC	5 cut(s)	14, 17, 135, 243, 255
BspANI	GGCC	3 cut(s)	123, 200, 432
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	2 cut(s)	199, 432
BspQI	GCTCTTC	1 cut(s)	47
BspTNI	GGTCTC	2 cut(s)	34, 252
BsrDI	GCAATG	1 cut(s)	337
BssECI	CCNNGG	4 cut(s)	32, 44, 91, 124
BssT1I	CCWWGG	2 cut(s)	44, 91
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	3 cut(s)	32, 47, 504
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	158, 321
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	34, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 153
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	123, 200, 432
BtgI	CCRYGG	1 cut(s)	32
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	198, 430, 431
CseI	GACGC	2 cut(s)	151, 431
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	9 cut(s)	57, 123, 156, 200, 232, 310, 346, 432, 463
CviKI_1	RGCY	9 cut(s)	57, 123, 156, 200, 232, 310, 346, 432, 463
DdeI	CTNAG	2 cut(s)	158, 321
Eam1104I	CTCTTC	3 cut(s)	32, 47, 504
EarI	CTCTTC	3 cut(s)	32, 47, 504
EciI	GGCGGA	2 cut(s)	150, 258
Eco130I	CCWWGG	2 cut(s)	44, 91
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	2 cut(s)	34, 252
EcoO109I	RGGNCCY	2 cut(s)	198, 431
EcoT14I	CCWWGG	2 cut(s)	44, 91
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	2 cut(s)	44, 91
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	131, 180, 489, 503, 532
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	3 cut(s)	281, 389, 444
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	123, 200, 432
HgaI	GACGC	2 cut(s)	151, 431
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	5 cut(s)	105, 138, 213, 225, 246
Hpy188I	TCNGA	2 cut(s)	218, 322
Hpy188III	TCNNGA	3 cut(s)	293, 365, 389
HpyAV	CCTTC	2 cut(s)	164, 215
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 153
HpyF3I	CTNAG	2 cut(s)	158, 321
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	278
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	351
MaeI	CTAG	3 cut(s)	281, 389, 444
MboII	GAAGA	4 cut(s)	49, 64, 347, 521
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	109, 134, 142, 199, 232, 444, 484
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	67
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	2 cut(s)	120, 153
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	199, 432
NmeAIII	GCCGAG	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	4 cut(s)	105, 213, 225, 246
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	199, 432
PspOMI	GGGCCC	1 cut(s)	430
PspPI	GGNCC	3 cut(s)	198, 430, 431
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	15
Sau96I	GGNCC	3 cut(s)	198, 430, 431
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	6 cut(s)	59, 66, 93, 234, 312, 348
SfcI	CTRYAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	5 cut(s)	14, 17, 135, 243, 255
SspMI	CTAG	3 cut(s)	281, 389, 444
StyI	CCWWGG	2 cut(s)	44, 91
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	71, 228
TasI	AATT	1 cut(s)	411
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	4 cut(s)	105, 213, 225, 246
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	17, 348
XbaI	TCTAGA	1 cut(s)	388
XspI	CTAG	3 cut(s)	281, 389, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.