Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

20183647 .. 20202091

Gene Structure 18445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCAATCGAAGATTGCAGCTTGGATTTGCTGCCTGAAAGCCTCAACTGGGCCACCCGCGATGCCGCTGACGCCACCGCTTCTTATTGTTCTTCTAAGTGCGTGGATGAGGAAAATGAGAAAGGATTGTCAAAACCAAAAGGGGGGAATTTGTGGAATTCGATAGAGTCTAGGTTGATTAAGCTTAGAGCCGATTGGGGTTTTGGTTCTGGTAATGGCGAGGATTTCGAGGAGATCGATGTGCTGCTGAGGCTGAATGGGATTGAGGAAGAAGGCGATAGAATCTTTGAAGATGAAAATGGGGTTTTGGTGATCCAGTGCCCTCTATGTGAAATTGACATTTCTGAGCTGAGCAATGAAGAAAGACAGCTCCACACTAATGATTGTCTTGACAAACAACAAGTTCGACCTCCAGAGGAACAAGAGGCTGATGATCCGATGGGGCCTCGAGTTTCTGGGCAAAAGTACAAGAAGTTGAAGAGTTTATCTACTCACAATTTCGCGGCAGTTTTACCTGGAGATTCAGTGGCCAAACTTGCTTGTGTTGGCTGGTGGACCTCCGCGCACCCAATCCTCATCGACCAAGCTCTCTTTTGTCTCAACAAGCGTGAATTCTCATTCAAGATCCAGCTCATCATCTTCCTTGAAGAGTTCTCCGGCTCGCACTTCACATCTGACCCAGATTCTCTTCTTCTTTTGCTCTCTACTTACGAGTTCAGGTCAAGTGTTCTCACAGGACCCGAAAATTATGCTTCTCAGCCTGTTGTGGACAAATTCAGTAGCATGTCTACTCGGGCTGGTCATGCGATCGATCAGGACAAGAACAAGAGATTGGTGAATTCCGGCTATAAAAACTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

287

Amino Acids

32.04

Weight (kDa)

4.66

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	788
AccII	CGCG	3 cut(s)	60, 503, 563
AciI	CCGC	5 cut(s)	58, 66, 78, 503, 561
AclWI	GGATC	3 cut(s)	307, 428, 619
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	5 cut(s)	148, 157, 611, 773, 838
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	49, 143
AgsI	TTSAA	4 cut(s)	290, 478, 622, 647
AjnI	CCWGG	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	6 cut(s)	21, 184, 349, 370, 587, 631
AluI	AGCT	6 cut(s)	21, 184, 349, 370, 587, 631
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	3 cut(s)	307, 428, 619
Ama87I	CYCGRG	2 cut(s)	447, 792
AoxI	GGCC	3 cut(s)	51, 443, 528
ApeKI	GCWGC	3 cut(s)	18, 31, 244
ApoI	RAATTY	5 cut(s)	148, 157, 611, 773, 838
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	4 cut(s)	51, 443, 555, 737
AsuHPI	GGTGA	2 cut(s)	322, 847
AvaI	CYCGRG	2 cut(s)	447, 792
AvaII	GGWCC	2 cut(s)	555, 737
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	530
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	18, 30, 231
BccI	CCATC	1 cut(s)	433
BcgI	CGANNNNNNTGC	2 cut(s)	731, 765
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	5 cut(s)	19, 32, 66, 245, 504
BlpI	GCTNAGC	1 cut(s)	350
BlsI	GCNGC	5 cut(s)	20, 33, 67, 246, 505
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	2 cut(s)	555, 737
BmeT110I	CYCGRG	2 cut(s)	447, 792
BmgT120I	GGNCC	4 cut(s)	51, 443, 555, 737
BmiI	GGNNCC	2 cut(s)	444, 739
BmrFI	CCNGG	1 cut(s)	516
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	58
BpmI	CTGGAG	2 cut(s)	396, 537
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	350
Bsa29I	ATCGAT	2 cut(s)	237, 810
BsaHI	GRCGYC	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 143
Bse1I	ACTGG	2 cut(s)	53, 316
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	516
BseCI	ATCGAT	2 cut(s)	237, 810
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	49, 143
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	4 cut(s)	239, 336, 341, 770
BseNI	ACTGG	2 cut(s)	53, 316
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	18, 30, 231
Bsh1236I	CGCG	3 cut(s)	60, 503, 563
Bsh1285I	CGRYCG	1 cut(s)	810
BshFI	GGCC	3 cut(s)	53, 445, 530
BshVI	ATCGAT	2 cut(s)	237, 810
BsiEI	CGRYCG	1 cut(s)	810
BsiHKCI	CYCGRG	2 cut(s)	447, 792
BsiSI	CCGG	2 cut(s)	657, 843
BslI	CCNNNNNNNGG	2 cut(s)	49, 143
BsmAI	GTCTC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	53, 445, 530
BsoBI	CYCGRG	2 cut(s)	447, 792
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	5 cut(s)	58, 66, 78, 503, 561
BspANI	GGCC	3 cut(s)	53, 445, 530
BspCNI	CTCAG	4 cut(s)	240, 337, 342, 769
BspDI	ATCGAT	2 cut(s)	237, 810
BspFNI	CGCG	3 cut(s)	60, 503, 563
BspLI	GGNNCC	2 cut(s)	444, 739
BspPI	GGATC	3 cut(s)	307, 428, 619
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	53, 316
BssMI	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	516
Bst6I	CTCTTC	3 cut(s)	473, 642, 693
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	6 cut(s)	96, 185, 248, 345, 350, 756
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	3 cut(s)	60, 503, 563
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	6 cut(s)	237, 315, 436, 627, 810, 814
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
BstMCI	CGRYCG	1 cut(s)	810
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 250, 536, 803
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	1 cut(s)	514
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	3 cut(s)	60, 503, 563
BstV1I	GCAGC	3 cut(s)	18, 30, 231
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
Bsu15I	ATCGAT	2 cut(s)	237, 810
BsuRI	GGCC	3 cut(s)	53, 445, 530
BsuTUI	ATCGAT	2 cut(s)	237, 810
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	323, 531
Cac8I	GCNNGC	1 cut(s)	662
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	4 cut(s)	51, 443, 555, 737
ClaI	ATCGAT	2 cut(s)	237, 810
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	2 cut(s)	784, 803
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	6 cut(s)	96, 185, 248, 345, 350, 756
DpnI	GATC	6 cut(s)	236, 314, 435, 626, 809, 813
DpnII	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	3 cut(s)	473, 642, 693
EarI	CTCTTC	3 cut(s)	473, 642, 693
Eco47I	GGWCC	2 cut(s)	555, 737
Eco88I	CYCGRG	2 cut(s)	447, 792
EcoO109I	RGGNCCY	2 cut(s)	443, 737
EcoRI	GAATTC	3 cut(s)	157, 611, 838
EcoRII	CCWGG	1 cut(s)	514
FaeI	CATG	2 cut(s)	787, 806
FaiI	YATR	5 cut(s)	328, 750, 785, 804, 849
FatI	CATG	2 cut(s)	783, 802
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	788
Fnu4HI	GCNGC	5 cut(s)	19, 32, 66, 245, 504
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	5 cut(s)	19, 32, 66, 245, 504
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	5 cut(s)	19, 32, 66, 245, 504
GsuI	CTGGAG	2 cut(s)	396, 537
HaeIII	GGCC	3 cut(s)	53, 445, 530
HapII	CCGG	2 cut(s)	657, 843
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	565
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	787, 806
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	4 cut(s)	167, 282, 521, 683
HpaII	CCGG	2 cut(s)	657, 843
HphI	GGTGA	2 cut(s)	322, 847
Hpy166II	GTNNAC	3 cut(s)	555, 769, 789
Hpy188I	TCNGA	3 cut(s)	346, 438, 676
Hpy188III	TCNNGA	4 cut(s)	389, 413, 622, 815
Hpy8I	GTNNAC	3 cut(s)	555, 769, 789
HpyAV	CCTTC	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 250, 536, 803
HpyF3I	CTNAG	6 cut(s)	96, 185, 248, 345, 350, 756
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	787, 806
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
LmnI	GCTCC	1 cut(s)	375
Lsp1109I	GCAGC	3 cut(s)	18, 30, 231
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	171
MalI	GATC	6 cut(s)	236, 314, 435, 626, 809, 813
MboI	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	8 cut(s)	148, 157, 333, 496, 611, 745, 773, 838
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	176
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	657, 843
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
MvnI	CGCG	3 cut(s)	60, 503, 563
MwoI	GCNNNNNNNGC	4 cut(s)	71, 250, 536, 803
NdeII	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
NlaIII	CATG	2 cut(s)	787, 806
NlaIV	GGNNCC	2 cut(s)	444, 739
NspI	RCATGY	1 cut(s)	787
PaeR7I	CTCGAG	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	282, 521, 683
PkrI	GCNGC	5 cut(s)	20, 33, 67, 246, 505
Ple19I	CGATCG	1 cut(s)	810
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	444, 739
PspPI	GGNCC	4 cut(s)	51, 443, 555, 737
PspPPI	RGGWCCY	1 cut(s)	737
PspXI	VCTCGAGB	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	624
PvuI	CGATCG	1 cut(s)	810
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	5 cut(s)	19, 32, 66, 245, 504
Sau3AI	GATC	6 cut(s)	234, 312, 433, 624, 807, 811
Sau96I	GGNCC	4 cut(s)	51, 443, 555, 737
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	555, 737
SlaI	CTCGAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	8 cut(s)	148, 157, 333, 496, 611, 745, 773, 838
SsiI	CCGC	5 cut(s)	58, 66, 78, 503, 561
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	514
TaqI	TCGA	8 cut(s)	9, 161, 228, 237, 406, 448, 579, 810
TasI	AATT	8 cut(s)	148, 157, 333, 496, 611, 745, 773, 838
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	68, 506
TfiI	GAWTC	3 cut(s)	282, 521, 683
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	323, 531
TseI	GCWGC	3 cut(s)	18, 31, 244
TspDTI	ATGAA	2 cut(s)	309, 372
TspRI	CASTG	2 cut(s)	323, 531
VpaK11BI	GGWCC	2 cut(s)	555, 737
XapI	RAATTY	5 cut(s)	148, 157, 611, 773, 838
XceI	RCATGY	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	788
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.