Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

54530975 .. 54532582

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGCATGGATCAGCGACGACTGGGATCAAACGGCGGAGAGTAGGGCCCATGACTTCCGGCCTTGCATCAAGATCAGAGTTCTCCATTGGCGCTTCTTCATCGTCTTCAGGCAAGCCGGCAGAGAGAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGTCGGCATTGGCACTGGTGGAGAAAGAAAATAAGAAGGCACTGGCAGAGAGAGGGAAGAGAGAGAGCGACTCCACTTTCAACCAAACCCAAGTCTCCAAATCCACTCCAATCAAAGATTGCAGCTTGGATTCGCTACCTGAAAGCCTCGATTGGGCCACCCACGACGCCGCTGACGCCACTGCTTCTTATTGTTATTCTGCGTGTGTGGATGAGGAAAATGAGAAAGGATTGTCAAAACCAAAAGGGGGGTATTTGTGGAATTCGATAGAGTCTAGGTTGATTAAGCCTGGAGCTGATTGGGGTTTTGGTTCTGGTAATGGCGAGGATTTCGAGGAGATCGATGTGCTGCTGAGGCTAAATGGGATTGAGGAAGAAGGCGATGGAATCATTGAGGATGAAAATGGGGGTTTGGTGGTCCAGTGCCCTCTATGTGAAACTGGCATTTCTGAGCTGAGCAATGAAGAAAGACAGCTCCACACTAATGATTGTCTTGACAAACAACAAGTTCGACCTCCAGAGGTAAGTTTAAAGTGTTTTAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

235

Amino Acids

25.6

Weight (kDa)

5.26

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	37, 327
AclWI	GGATC	2 cut(s)	19, 35
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	2 cut(s)	324, 333
AfiI	CCNNNNNNNGG	2 cut(s)	310, 404
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	4 cut(s)	282, 452, 610, 631
AluI	AGCT	4 cut(s)	282, 452, 610, 631
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	19, 35
AoxI	GGCC	3 cut(s)	47, 61, 312
ApaI	GGGCCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	279, 505
ApoI	RAATTY	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	4 cut(s)	47, 48, 312, 574
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	2 cut(s)	51, 584
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	99
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	291, 492
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	3 cut(s)	280, 327, 506
BlpI	GCTNAGC	1 cut(s)	611
BlsI	GCNGC	3 cut(s)	281, 328, 507
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	4 cut(s)	47, 48, 312, 574
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	2 cut(s)	468, 657
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	498
BsaHI	GRCGYC	2 cut(s)	324, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 404
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	5 cut(s)	28, 177, 204, 577, 601
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	498
BseGI	GGATG	2 cut(s)	373, 559
BseLI	CCNNNNNNNGG	2 cut(s)	310, 404
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	3 cut(s)	500, 597, 602
BseNI	ACTGG	5 cut(s)	28, 177, 204, 577, 601
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	2 cut(s)	51, 584
BseXI	GCAGC	2 cut(s)	291, 492
BshFI	GGCC	3 cut(s)	49, 63, 314
BshVI	ATCGAT	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	60, 119
BslI	CCNNNNNNNGG	2 cut(s)	310, 404
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	49, 63, 314
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	51, 584
Bsp143I	GATC	4 cut(s)	11, 27, 74, 495
Bsp1720I	GCTNAGC	1 cut(s)	611
BspACI	CCGC	2 cut(s)	37, 327
BspANI	GGCC	3 cut(s)	49, 63, 314
BspCNI	CTCAG	3 cut(s)	501, 598, 603
BspDI	ATCGAT	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	2 cut(s)	19, 35
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	5 cut(s)	28, 177, 204, 577, 601
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	4 cut(s)	11, 27, 74, 495
BssNI	GRCGYC	2 cut(s)	324, 333
Bst2UI	CCWGG	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	2 cut(s)	324, 333
BstC8I	GCNNGC	2 cut(s)	116, 120
BstDEI	CTNAG	3 cut(s)	509, 606, 611
BstF5I	GGATG	2 cut(s)	373, 559
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	4 cut(s)	14, 30, 77, 498
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	4 cut(s)	11, 27, 74, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 511
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstSLI	GKGCMC	2 cut(s)	51, 584
BstV1I	GCAGC	2 cut(s)	291, 492
BstV2I	GAAGAC	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	49, 63, 314
BsuTUI	ATCGAT	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	373, 559
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	4 cut(s)	170, 197, 336, 584
Cac8I	GCNNGC	2 cut(s)	116, 120
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	4 cut(s)	47, 48, 312, 574
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	2 cut(s)	332, 341
CviAII	CATG	2 cut(s)	8, 52
DdeI	CTNAG	3 cut(s)	509, 606, 611
DpnI	GATC	4 cut(s)	13, 29, 76, 497
DpnII	GATC	4 cut(s)	11, 27, 74, 495
DraI	TTTAAA	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	2 cut(s)	11, 55
FaiI	YATR	3 cut(s)	9, 53, 589
FatI	CATG	2 cut(s)	7, 51
Fnu4HI	GCNGC	3 cut(s)	280, 327, 506
FokI	GGATG	2 cut(s)	380, 566
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	280, 327, 506
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	280, 327, 506
GsuI	CTGGAG	2 cut(s)	468, 657
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	49, 63, 314
HapII	CCGG	2 cut(s)	60, 119
HgaI	GACGC	2 cut(s)	332, 341
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	2 cut(s)	324, 333
Hin1II	CATG	2 cut(s)	11, 55
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	4 cut(s)	227, 287, 428, 543
HpaII	CCGG	2 cut(s)	60, 119
Hpy188I	TCNGA	2 cut(s)	79, 607
Hpy188III	TCNNGA	3 cut(s)	72, 650, 674
Hpy99I	CGWCG	2 cut(s)	22, 326
HpyAV	CCTTC	2 cut(s)	187, 527
HpyCH4V	TGCA	2 cut(s)	68, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 511
HpyF3I	CTNAG	3 cut(s)	509, 606, 611
Hsp92I	GRCGYC	2 cut(s)	324, 333
Hsp92II	CATG	2 cut(s)	11, 55
HspAI	GCGC	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	11, 27, 74, 495
LmnI	GCTCC	3 cut(s)	4, 449, 636
Lsp1109I	GCAGC	2 cut(s)	291, 492
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	432
MalI	GATC	4 cut(s)	13, 29, 76, 497
MboI	GATC	4 cut(s)	11, 27, 74, 495
MhlI	GDGCHC	2 cut(s)	51, 584
MluCI	AATT	1 cut(s)	418
MlyI	GAGTC	2 cut(s)	221, 437
MroNI	GCCGGC	1 cut(s)	118
MseI	TTAA	2 cut(s)	441, 686
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	60, 119
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	332, 511
NaeI	GCCGGC	1 cut(s)	120
NdeII	GATC	4 cut(s)	11, 27, 74, 495
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	11, 55
NlaIV	GGNNCC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	287, 543
PkrI	GCNGC	3 cut(s)	281, 328, 507
PleI	GAGTC	2 cut(s)	221, 436
PpsI	GAGTC	2 cut(s)	221, 436
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	49
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	4 cut(s)	47, 48, 312, 574
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	441, 686
SatI	GCNGC	3 cut(s)	280, 327, 506
Sau3AI	GATC	4 cut(s)	11, 27, 74, 495
Sau96I	GGNCC	4 cut(s)	47, 48, 312, 574
SchI	GAGTC	2 cut(s)	221, 437
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	2 cut(s)	51, 584
SetI	ASST	8 cut(s)	284, 298, 437, 454, 612, 633, 673, 681
SfaNI	GCATC	1 cut(s)	77
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	639
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	37, 327
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	445
TaqI	TCGA	5 cut(s)	306, 422, 489, 498, 667
TasI	AATT	1 cut(s)	418
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	287, 543
Tru1I	TTAA	2 cut(s)	441, 686
Tru9I	TTAA	2 cut(s)	441, 686
TscAI	CASTG	4 cut(s)	177, 204, 343, 584
TseI	GCWGC	2 cut(s)	279, 505
TspDTI	ATGAA	3 cut(s)	90, 570, 633
TspRI	CASTG	4 cut(s)	177, 204, 343, 584
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	418
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.