Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003120.1

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

17836 .. 18557

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003120.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggcttccaaatccagaatcaacctcatagacgacgacgacgacgacgacgacttccaaacccctctgacccaaaccgccacagctcgcacgcccttcaaaaagcccatcgcctccggcaaagaaaacgttcctcctccgctttgcttcacccccaaagactccattttgaaccgaacccaggtctccaaatccacgccaatcgaagattgcagcttggattctctgcctgaaagcctcgactggaccacccacggcgccgctgcttctgcgtgcgtgggtgaggaaaatgagaaagggcaaggggggtattttcggaattcgatagagtctaggttgattaagcccggagccgattggggttttggttctggaaatggcgaggagattgatgtgctgctgaggctgaatgggattgaggaagaaggggaaggaattgttgaggatgaaaatgagggtttggtggttcagtgccctctatgtgaaattgacatttctgagctgagcaatgaagaaagacagctccacactaatgattgtcttgacaaacaacaagttcgacatctagacgaacaagaggggtctggaattgctgatgatccgatgaggcctgtcttcaaatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

208

Amino Acids

22.79

Weight (kDa)

4.28

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	3 cut(s)	78, 140, 261
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	100, 172, 619
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	86, 216, 502, 523
AluI	AGCT	4 cut(s)	86, 216, 502, 523
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	593
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	3 cut(s)	213, 263, 397
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	142, 293
AvaII	GGWCC	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	607
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	225, 250, 384
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	333, 566
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	4 cut(s)	214, 261, 264, 398
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	4 cut(s)	215, 262, 265, 399
Bme1390I	CCNGG	2 cut(s)	182, 348
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	259, 352
BmrFI	CCNGG	2 cut(s)	182, 348
BpiI	GAAGAC	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	401
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	180, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	180, 253
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	3 cut(s)	392, 489, 494
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	126, 398
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	3 cut(s)	225, 250, 384
BshFI	GGCC	1 cut(s)	610
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	117, 348
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	610
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	598
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	3 cut(s)	78, 140, 261
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	3 cut(s)	393, 490, 495
BspHI	TCATGA	1 cut(s)	623
BspLI	GGNNCC	2 cut(s)	259, 352
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	180, 253
BssMI	GATC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	88, 92, 274
BstDEI	CTNAG	3 cut(s)	401, 498, 503
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	451
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 403
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	180, 346
BstSLI	GKGCMC	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	225, 250, 384
BstV2I	GAAGAC	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	476
Cac8I	GCNNGC	3 cut(s)	88, 92, 274
CciI	TCATGA	1 cut(s)	623
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	1 cut(s)	624
DdeI	CTNAG	3 cut(s)	401, 498, 503
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
Eco147I	AGGCCT	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	180
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	1 cut(s)	627
FaiI	YATR	3 cut(s)	29, 481, 625
FatI	CATG	1 cut(s)	623
Fnu4HI	GCNGC	4 cut(s)	214, 261, 264, 398
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	214, 261, 264, 398
FspBI	CTAG	2 cut(s)	333, 566
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	4 cut(s)	214, 261, 264, 398
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	2 cut(s)	117, 348
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	627
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	4 cut(s)	18, 161, 221, 329
HpaII	CCGG	2 cut(s)	117, 348
HphI	GGTGA	2 cut(s)	142, 293
Hpy188I	TCNGA	4 cut(s)	69, 318, 499, 603
Hpy188III	TCNNGA	6 cut(s)	15, 372, 542, 566, 585, 624
Hpy99I	CGWCG	6 cut(s)	38, 41, 44, 47, 50, 53
HpyAV	CCTTC	3 cut(s)	106, 419, 425
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 403
HpyF3I	CTNAG	3 cut(s)	401, 498, 503
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	627
HspAI	GCGC	1 cut(s)	258
KasI	GGCGCC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	2 cut(s)	350, 528
LpnPI	CCDG	9 cut(s)	28, 130, 167, 194, 229, 243, 357, 361, 570
Lsp1109I	GCAGC	3 cut(s)	225, 250, 384
MaeI	CTAG	2 cut(s)	333, 566
MaeII	ACGT	1 cut(s)	129
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	4 cut(s)	218, 434, 524, 607
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	4 cut(s)	319, 435, 486, 588
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	155, 338
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	2 cut(s)	117, 348
MspR9I	CCNGG	2 cut(s)	182, 348
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	269, 403
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	1 cut(s)	627
NlaIV	GGNNCC	2 cut(s)	259, 352
PagI	TCATGA	1 cut(s)	623
PceI	AGGCCT	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	4 cut(s)	39, 42, 45, 48
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	18, 221
PkrI	GCNGC	4 cut(s)	215, 262, 265, 399
PleI	GAGTC	2 cut(s)	155, 337
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	2 cut(s)	155, 337
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	259, 352
PspPI	GGNCC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	214, 261, 264, 398
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	2 cut(s)	155, 338
ScrFI	CCNGG	2 cut(s)	182, 348
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	8 cut(s)	27, 88, 132, 186, 218, 338, 504, 525
SfoI	GGCGCC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	4 cut(s)	319, 435, 486, 588
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	3 cut(s)	78, 140, 261
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	2 cut(s)	333, 566
StuI	AGGCCT	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	180, 346
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	204, 240, 323, 559
TasI	AATT	4 cut(s)	319, 435, 486, 588
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	18, 221
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	476
TseI	GCWGC	3 cut(s)	213, 263, 397
TspDTI	ATGAA	2 cut(s)	462, 525
TspRI	CASTG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	333, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.