Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

5732407 .. 5736320

Gene Structure 3914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2016 bp

ATGGCTTCCAAATCCAGATTCAACTTCATAGACGACGACGAGGATTTCCAAACCCCTCTGACCCAAACCGCCACAGCTCGCACGCCCTTCAAAAAGCCCATCGCCTCCGGCAAAGAAAACGTTCCTCCTCCGCTTTGCTTCGCCCCCAAAGACTCCATTTTGAACCCAACCCAGGTCTCCAAATCCACGCCAATCGAGGATTGCAGCTTGGATTCGCTGCCTGAAAGCCTCGACTGGGCCCACGCCCACGGCGCCGCTGCTTCTGCGTGCGTGGCGGATTGGGGTTTTGGTTCTGGTAATGGCGAGGATTTCGAGGAGATTGATGTGCTGCTGAGGCTGAATGGGATTGAGGAAGAAGGGGAAGGATTTGTTGAGGATGAAAATGGGGGTTTGGTGGTTCAGTGCCCTCTATGTGGGATTGACATTTCTGAGCTGAGCAATGAAGAAAGACAGCTCCACACTAATGATTGTCTTGACAAACAACAAGTTCGACCTCTAGACGAACAAGAGGGGTCTGGAATTGCTCATGATCCGATGGGGCCTCCAGTTTCTGGGCAAGTTGTTGAGTGGCTACGCGGTCTTGGTTTAGACAAGTATGTGGAAGTTTTTATAAGGGAAGAGATCGATTGGGATGCTCTACAGTGGCTCACAGAAGAGGATTTGTTTAACATTGGCATTACGGCACTTGGTCCGCGTAAGAAGATTGTGCATGCACTCGCTCAACTTAGACAAGGGACTAGCAATGGAATTGAAGCACAAACTGCACAACCAAGAAAAAGGAGTGCCAATGGGGTCGAGGTGCTCGATGATGCATTGGAAGGAACAGTTGGTGATAGTAATAAATCAGCTTCAAACAAGTTGATCACAGATTACTTTCCAGGATTTGGTGGTGCTAGGAAGCAGGTCTGCACCACCTCCAGAGAACAGCAAAGGGTAGAAAAGCGTCAGTCAGGTGCTGGTCATAAACGTGTTGTGGTGAAAAATCATGCCACAAATAGAAAACTCAGGGATGTTCCCTCATGGTGTTGTGTTCCAGGAACACCATTTCGAGTAGATGCTTTTAAATATCTTAAACGGGATTGTTCTCATTGGTTTCTCACTCACTTTCATATGGACCATTATCAAGGTTTAACAAAGTCCTTTTGTCATGGAAAGATCTATTGCTCCTCCATTACGGCTAAGCTTGTAAACATGAAGCTTGGCATTCCATGGGACAGTATACAAGTTGTACCCCTCAACCGAAAGATCAATATTGCAGGTATTGATGTCACCTGCTTGGATGCAAACCACTGCCCTGGTTCCATAATTATACTTTTTGAACCGCCTAACAGTAAGGCTGTTCTACATACAGGGGACTTTCGCTTTAGTGAGGATGCAGCAAGCATGACTGTTTTGCGAACATCTTCTATTCATACGCTCATCCTTGATACCACTTACTGTAACCCACAGTATGACTTTCCAAAGCAGGAGGCTGTAATTCAGTTTGTCGTTGATGCAATTCAAGCTGAAACTTTCAACCCTAAAACTCTATTTCTGATTGGCAGCTACACAATTGGAAAGGAACGCCTTTACTTGGAGGTTGCTCGTGTGCTCCGGAAAAAGATTTATGTCACTGCTGGAAAGCTGCATATTTTAAAATGTTTGGATTTTCCTGAGGAGGATATGCAGTGGTTTACATTAAACGAACATGAAAGCCAAATTCATGTGGTGCCGATGTGGACACTGGCAAGCTTCAAGCGACTGAAGCATGTATCCAATCAATATGCGAGTCGATACAGTCTTATTGTTGCTTTCTCTCCAACTGGTTGGACTTTTGGTAAAGGAAAGAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACCATTATAAGGTATGAGGTGCCATATAGTGAGCATTCGAGCTTTACAGAACTCAGACAGTTTGTGAAGCTTGTGTCCCCTGTACAAATAATACCAAGTGTGAACAATCATGGCCCGGATTCAGCGAATTTCATGGTTTCTCTTCTCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

671

Amino Acids

74.97

Weight (kDa)

6.11

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_2	PF07647	185 - 243	3e-11	SAM domain (Sterile alpha motif)
SAM_1	PF00536	186 - 243	6e-17	SAM domain (Sterile alpha motif)
DRMBL	PF07522	554 - 657	1.6e-26	DNA repair metallo-beta-lactamase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	611, 1868
AarI	CACCTGC	1 cut(s)	1280
Acc36I	ACCTGC	3 cut(s)	892, 1247, 1280
Acc65I	GGTACC	1 cut(s)	1859
AccB1I	GGYRCC	4 cut(s)	251, 1708, 1859, 1879
AccB7I	CCANNNNNTGG	2 cut(s)	551, 884
AccI	GTMKAC	1 cut(s)	1219
AccII	CGCG	2 cut(s)	576, 694
AccIII	TCCGGA	1 cut(s)	1593
AciI	CCGC	7 cut(s)	69, 131, 255, 275, 576, 692, 1322
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	2 cut(s)	1698, 1987
AcuI	CTGAAG	1 cut(s)	1763
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	1230, 1861, 1944
AfiI	CCNNNNNNNGG	7 cut(s)	172, 235, 413, 551, 884, 1573, 1869
AflIII	ACRYGT	1 cut(s)	967
AgsI	TTSAA	9 cut(s)	22, 91, 163, 752, 852, 1319, 1502, 1516, 1735
AjnI	CCWGG	5 cut(s)	171, 877, 1033, 1294, 1837
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 810, 842
Alw21I	GWGCWC	2 cut(s)	804, 1593
Alw26I	GTCTC	2 cut(s)	181, 1839
AlwI	GGATC	1 cut(s)	524
AlwNI	CAGNNNCTG	2 cut(s)	551, 956
Aor13HI	TCCGGA	1 cut(s)	1593
AoxI	GGCC	3 cut(s)	237, 539, 1972
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	8 cut(s)	204, 217, 257, 328, 1376, 1542, 1624, 1852
ApoI	RAATTY	2 cut(s)	1698, 1987
Asp700I	GAANNNNTTC	2 cut(s)	120, 1402
Asp718I	GGTACC	1 cut(s)	1859
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	6 cut(s)	237, 238, 539, 689, 1114, 1973
AsuC2I	CCSGG	1 cut(s)	1976
AsuHPI	GGTGA	3 cut(s)	842, 988, 1261
AvaII	GGWCC	2 cut(s)	689, 1114
AxyI	CCTNAGG	1 cut(s)	1653
BaeGI	GKGCMC	2 cut(s)	241, 407
BanI	GGYRCC	4 cut(s)	251, 1708, 1859, 1879
BanII	GRGCYC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	1584
Bbv12I	GWGCWC	2 cut(s)	804, 1593
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	8 cut(s)	204, 216, 244, 315, 1388, 1554, 1611, 1864
BccI	CCATC	2 cut(s)	107, 529
BceAI	ACGGC	3 cut(s)	265, 696, 1191
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	5 cut(s)	173, 879, 1035, 1296, 1839
BciVI	GTATCC	1 cut(s)	1762
BclI	TGATCA	1 cut(s)	861
BcnI	CCSGG	1 cut(s)	1976
BcoDI	GTCTC	2 cut(s)	181, 1839
BfaI	CTAG	3 cut(s)	497, 738, 894
BfmI	CTRYAG	1 cut(s)	638
BfoI	RGCGCY	1 cut(s)	255
BfuAI	ACCTGC	3 cut(s)	892, 1247, 1280
BfuI	GTATCC	1 cut(s)	1762
BglII	AGATCT	1 cut(s)	1155
BisI	GCNGC	9 cut(s)	205, 218, 255, 258, 329, 1377, 1543, 1625, 1853
BlpI	GCTNAGC	2 cut(s)	434, 1179
BlsI	GCNGC	9 cut(s)	206, 219, 256, 259, 330, 1378, 1544, 1626, 1854
Bme1390I	CCNGG	6 cut(s)	173, 879, 1035, 1296, 1839, 1976
Bme18I	GGWCC	2 cut(s)	689, 1114
BmgT120I	GGNCC	6 cut(s)	237, 238, 539, 689, 1114, 1973
BmiI	GGNNCC	7 cut(s)	239, 253, 540, 1300, 1710, 1861, 1881
BmrFI	CCNGG	6 cut(s)	173, 879, 1035, 1296, 1839, 1976
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	6 cut(s)	622, 799, 1045, 1270, 1363, 1483
BmuI	ACTGGG	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	528, 901
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	2 cut(s)	434, 1179
BpuMI	CCSGG	1 cut(s)	1976
Bsa29I	ATCGAT	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	171, 247, 1208, 1294
BsaWI	WCCGGW	1 cut(s)	1593
Bsc4I	CCNNNNNNNGG	7 cut(s)	172, 235, 413, 551, 884, 1573, 1869
Bse1I	ACTGG	4 cut(s)	239, 545, 1728, 1807
Bse21I	CCTNAGG	1 cut(s)	1653
Bse3DI	GCAATG	2 cut(s)	445, 748
BseAI	TCCGGA	1 cut(s)	1593
BseBI	CCWGG	5 cut(s)	173, 879, 1035, 1296, 1839
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	4 cut(s)	171, 247, 1208, 1294
BseGI	GGATG	6 cut(s)	382, 637, 1015, 1285, 1378, 1419
BseLI	CCNNNNNNNGG	7 cut(s)	172, 235, 413, 551, 884, 1573, 1869
BseMI	GCAATG	2 cut(s)	445, 748
BseMII	CTCAG	6 cut(s)	323, 420, 425, 1018, 1644, 1927
BseNI	ACTGG	4 cut(s)	239, 545, 1728, 1807
BseRI	GAGGAG	4 cut(s)	117, 329, 1156, 1670
BseSI	GKGCMC	2 cut(s)	241, 407
BseXI	GCAGC	8 cut(s)	204, 216, 244, 315, 1388, 1554, 1611, 1864
BsgI	GTGCAG	2 cut(s)	747, 892
Bsh1236I	CGCG	2 cut(s)	576, 694
BshFI	GGCC	3 cut(s)	239, 541, 1974
BshNI	GGYRCC	4 cut(s)	251, 1708, 1859, 1879
BshVI	ATCGAT	1 cut(s)	624
BsiHKAI	GWGCWC	2 cut(s)	804, 1593
BsiSI	CCGG	3 cut(s)	108, 1594, 1976
BslFI	GGGAC	4 cut(s)	748, 1226, 1367, 1921
BslI	CCNNNNNNNGG	7 cut(s)	172, 235, 413, 551, 884, 1573, 1869
BsmAI	GTCTC	2 cut(s)	181, 1839
BsmFI	GGGAC	4 cut(s)	748, 1226, 1367, 1921
BsmI	GAATGC	2 cut(s)	1203, 1894
BsnI	GGCC	3 cut(s)	239, 541, 1974
Bso31I	GGTCTC	1 cut(s)	181
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	4 cut(s)	241, 407, 804, 1593
Bsp13I	TCCGGA	1 cut(s)	1593
Bsp1407I	TGTACA	1 cut(s)	1942
Bsp143I	GATC	5 cut(s)	529, 621, 861, 1155, 1245
Bsp1720I	GCTNAGC	2 cut(s)	434, 1179
Bsp19I	CCATGG	1 cut(s)	1208
BspACI	CCGC	7 cut(s)	69, 131, 255, 275, 576, 692, 1322
BspANI	GGCC	3 cut(s)	239, 541, 1974
BspCNI	CTCAG	6 cut(s)	324, 421, 426, 1017, 1645, 1926
BspDI	ATCGAT	1 cut(s)	624
BspEI	TCCGGA	1 cut(s)	1593
BspFNI	CGCG	2 cut(s)	576, 694
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	7 cut(s)	239, 253, 540, 1300, 1710, 1861, 1881
BspMI	ACCTGC	3 cut(s)	892, 1247, 1280
BspPI	GGATC	1 cut(s)	524
BspT107I	GGYRCC	4 cut(s)	251, 1708, 1859, 1879
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	445, 748
BsrGI	TGTACA	1 cut(s)	1942
BsrI	ACTGG	4 cut(s)	239, 545, 1728, 1807
BssECI	CCNNGG	4 cut(s)	171, 247, 1208, 1294
BssMI	GATC	5 cut(s)	529, 621, 861, 1155, 1245
BssNAI	GTATAC	1 cut(s)	1220
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	1584
BssT1I	CCWWGG	1 cut(s)	1208
Bst1107I	GTATAC	1 cut(s)	1220
Bst2BI	CACGAG	1 cut(s)	1584
Bst2UI	CCWGG	5 cut(s)	173, 879, 1035, 1296, 1839
Bst4CI	ACNGT	9 cut(s)	642, 826, 1217, 1331, 1390, 1439, 1449, 1778, 1920
Bst6I	CTCTTC	3 cut(s)	612, 648, 2007
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	1942
BstC8I	GCNNGC	6 cut(s)	79, 83, 268, 711, 1381, 1729
BstDEI	CTNAG	8 cut(s)	332, 429, 434, 725, 1004, 1179, 1653, 1913
BstDSI	CCRYGG	2 cut(s)	247, 1208
BstF5I	GGATG	6 cut(s)	382, 637, 1015, 1285, 1378, 1419
BstFNI	CGCG	2 cut(s)	576, 694
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	5 cut(s)	532, 624, 864, 1158, 1248
BstMAI	GTCTC	2 cut(s)	181, 1839
BstMBI	GATC	5 cut(s)	529, 621, 861, 1155, 1245
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 263, 272, 334, 761, 1502, 1744
BstNI	CCWGG	5 cut(s)	173, 879, 1035, 1296, 1839
BstNSI	RCATGY	2 cut(s)	713, 1751
BstSCI	CCNGG	6 cut(s)	171, 877, 1033, 1294, 1837, 1974
BstSFI	CTRYAG	1 cut(s)	638
BstSLI	GKGCMC	2 cut(s)	241, 407
BstUI	CGCG	2 cut(s)	576, 694
BstV1I	GCAGC	8 cut(s)	204, 216, 244, 315, 1388, 1554, 1611, 1864
BstX2I	RGATCY	1 cut(s)	1155
BstXI	CCANNNNNNTGG	2 cut(s)	1295, 1806
BstYI	RGATCY	1 cut(s)	1155
BstZ17I	GTATAC	1 cut(s)	1220
Bsu15I	ATCGAT	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	1653
BsuI	GTATCC	1 cut(s)	1762
BsuRI	GGCC	3 cut(s)	239, 541, 1974
BsuTUI	ATCGAT	1 cut(s)	624
BtgI	CCRYGG	2 cut(s)	247, 1208
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	6 cut(s)	382, 637, 1015, 1285, 1378, 1419
BtsI	GCAGTG	3 cut(s)	1288, 1611, 1673
BtsIMutI	CAGTG	6 cut(s)	407, 647, 1288, 1611, 1673, 1721
BveI	ACCTGC	3 cut(s)	892, 1247, 1280
Cac8I	GCNNGC	6 cut(s)	79, 83, 268, 711, 1381, 1729
CaiI	CAGNNNCTG	2 cut(s)	551, 956
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	6 cut(s)	237, 238, 539, 689, 1114, 1973
ClaI	ATCGAT	1 cut(s)	624
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	3 cut(s)	1229, 1860, 1943
CviQI	GTAC	3 cut(s)	1229, 1860, 1943
DdeI	CTNAG	8 cut(s)	332, 429, 434, 725, 1004, 1179, 1653, 1913
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	5 cut(s)	531, 623, 863, 1157, 1247
DpnII	GATC	5 cut(s)	529, 621, 861, 1155, 1245
DraI	TTTAAA	2 cut(s)	1063, 1635
Eam1104I	CTCTTC	3 cut(s)	612, 648, 2007
EarI	CTCTTC	3 cut(s)	612, 648, 2007
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	1208
Eco24I	GRGCYC	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	689, 1114
Eco57I	CTGAAG	1 cut(s)	1763
Eco81I	CCTNAGG	1 cut(s)	1653
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRII	CCWGG	5 cut(s)	171, 877, 1033, 1294, 1837
EcoT14I	CCWWGG	1 cut(s)	1208
EcoT22I	ATGCAT	1 cut(s)	814
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	1208
FaqI	GGGAC	4 cut(s)	748, 1226, 1367, 1921
FauNDI	CATATG	1 cut(s)	1110
FbaI	TGATCA	1 cut(s)	861
FblI	GTMKAC	1 cut(s)	1219
Fnu4HI	GCNGC	9 cut(s)	205, 218, 255, 258, 329, 1377, 1543, 1625, 1853
FokI	GGATG	6 cut(s)	389, 644, 1022, 1292, 1385, 1406
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	9 cut(s)	205, 218, 255, 258, 329, 1377, 1543, 1625, 1853
FspBI	CTAG	3 cut(s)	497, 738, 894
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	9 cut(s)	205, 218, 255, 258, 329, 1377, 1543, 1625, 1853
GsuI	CTGGAG	2 cut(s)	528, 901
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	239, 541, 1974
HapII	CCGG	3 cut(s)	108, 1594, 1976
HgaI	GACGC	1 cut(s)	932
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HindIII	AAGCTT	4 cut(s)	1181, 1196, 1729, 1928
HinfI	GANTC	5 cut(s)	18, 152, 212, 1768, 1979
HpaII	CCGG	3 cut(s)	108, 1594, 1976
HphI	GGTGA	3 cut(s)	842, 988, 1261
Hpy166II	GTNNAC	5 cut(s)	1189, 1220, 1674, 1719, 1963
Hpy188I	TCNGA	5 cut(s)	60, 430, 534, 1536, 1916
Hpy188III	TCNNGA	8 cut(s)	15, 473, 497, 516, 527, 918, 1594, 1652
Hpy8I	GTNNAC	5 cut(s)	1189, 1220, 1674, 1719, 1963
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	5 cut(s)	97, 350, 356, 812, 1839
HpyCH4III	ACNGT	9 cut(s)	642, 826, 1217, 1331, 1390, 1439, 1449, 1778, 1920
HpyCH4IV	ACGT	2 cut(s)	120, 967
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 263, 272, 334, 761, 1502, 1744
HpyF3I	CTNAG	8 cut(s)	332, 429, 434, 725, 1004, 1179, 1653, 1913
HpySE526I	ACGT	2 cut(s)	120, 967
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
Kpn2I	TCCGGA	1 cut(s)	1593
KpnI	GGTACC	1 cut(s)	1863
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	5 cut(s)	529, 621, 861, 1155, 1245
LmnI	GCTCC	3 cut(s)	459, 1169, 1596
Lsp1109I	GCAGC	8 cut(s)	204, 216, 244, 315, 1388, 1554, 1611, 1864
LweI	GCATC	6 cut(s)	622, 799, 1045, 1270, 1363, 1483
MaeI	CTAG	3 cut(s)	497, 738, 894
MaeII	ACGT	2 cut(s)	120, 967
MaeIII	GTNAC	3 cut(s)	1267, 1439, 1609
MalI	GATC	5 cut(s)	531, 623, 863, 1157, 1247
MboI	GATC	5 cut(s)	529, 621, 861, 1155, 1245
MfeI	CAATTG	1 cut(s)	1551
MflI	RGATCY	1 cut(s)	1155
MhlI	GDGCHC	4 cut(s)	241, 407, 804, 1593
MluCI	AATT	8 cut(s)	519, 747, 1305, 1476, 1497, 1551, 1698, 1987
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	146, 1777
MmeI	TCCRAC	2 cut(s)	1787, 1823
Mph1103I	ATGCAT	1 cut(s)	814
MroI	TCCGGA	1 cut(s)	1593
MroXI	GAANNNNTTC	2 cut(s)	120, 1402
MseI	TTAA	7 cut(s)	666, 1062, 1071, 1130, 1634, 1679, 2014
MslI	CAYNNNNRTG	2 cut(s)	462, 966
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	3 cut(s)	108, 1594, 1976
MspR9I	CCNGG	6 cut(s)	173, 879, 1035, 1296, 1839, 1976
MunI	CAATTG	1 cut(s)	1551
Mva1269I	GAATGC	2 cut(s)	1203, 1894
MvaI	CCWGG	5 cut(s)	173, 879, 1035, 1296, 1839
MvnI	CGCG	2 cut(s)	576, 694
MwoI	GCNNNNNNNGC	7 cut(s)	251, 263, 272, 334, 761, 1502, 1744
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	1976
NcoI	CCATGG	1 cut(s)	1208
NdeI	CATATG	1 cut(s)	1110
NdeII	GATC	5 cut(s)	529, 621, 861, 1155, 1245
NlaIV	GGNNCC	7 cut(s)	239, 253, 540, 1300, 1710, 1861, 1881
NmuCI	GTSAC	2 cut(s)	1267, 1609
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	2 cut(s)	713, 1751
PaeI	GCATGC	1 cut(s)	713
PagI	TCATGA	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	1280
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	2 cut(s)	1203, 1894
PdmI	GAANNNNTTC	2 cut(s)	120, 1402
PfeI	GAWTC	3 cut(s)	18, 212, 1979
PflMI	CCANNNNNTGG	2 cut(s)	551, 884
PfoI	TCCNGGA	3 cut(s)	877, 1033, 1837
PkrI	GCNGC	9 cut(s)	206, 219, 256, 259, 330, 1378, 1544, 1626, 1854
PleI	GAGTC	2 cut(s)	146, 1776
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	2 cut(s)	146, 1776
PsiI	TTATAA	2 cut(s)	611, 1868
Psp1406I	AACGTT	1 cut(s)	120
Psp6I	CCWGG	5 cut(s)	171, 877, 1033, 1294, 1837
PspGI	CCWGG	5 cut(s)	171, 877, 1033, 1294, 1837
PspN4I	GGNNCC	7 cut(s)	239, 253, 540, 1300, 1710, 1861, 1881
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	6 cut(s)	237, 238, 539, 689, 1114, 1973
PstNI	CAGNNNCTG	2 cut(s)	551, 956
PsuI	RGATCY	1 cut(s)	1155
RsaI	GTAC	3 cut(s)	1230, 1861, 1944
RsaNI	GTAC	3 cut(s)	1229, 1860, 1943
RseI	CAYNNNNRTG	2 cut(s)	462, 966
SaqAI	TTAA	7 cut(s)	666, 1062, 1071, 1130, 1634, 1679, 2014
SatI	GCNGC	9 cut(s)	205, 218, 255, 258, 329, 1377, 1543, 1625, 1853
Sau3AI	GATC	5 cut(s)	529, 621, 861, 1155, 1245
Sau96I	GGNCC	6 cut(s)	237, 238, 539, 689, 1114, 1973
SchI	GAGTC	2 cut(s)	146, 1777
ScrFI	CCNGG	6 cut(s)	173, 879, 1035, 1296, 1839, 1976
SduI	GDGCHC	4 cut(s)	241, 407, 804, 1593
SfaNI	GCATC	6 cut(s)	622, 799, 1045, 1270, 1363, 1483
SfcI	CTRYAG	1 cut(s)	638
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	2 cut(s)	689, 1114
SmiMI	CAYNNNNRTG	2 cut(s)	462, 966
SphI	GCATGC	1 cut(s)	713
Sse9I	AATT	8 cut(s)	519, 747, 1305, 1476, 1497, 1551, 1698, 1987
SsiI	CCGC	7 cut(s)	69, 131, 255, 275, 576, 692, 1322
SspDI	GGCGCC	1 cut(s)	251
SspI	AATATT	1 cut(s)	1252
SspMI	CTAG	3 cut(s)	497, 738, 894
StyD4I	CCNGG	6 cut(s)	171, 877, 1033, 1294, 1837, 1974
StyI	CCWWGG	1 cut(s)	1208
TaaI	ACNGT	9 cut(s)	642, 826, 1217, 1331, 1390, 1439, 1449, 1778, 1920
TaiI	ACGT	2 cut(s)	123, 970
TasI	AATT	8 cut(s)	519, 747, 1305, 1476, 1497, 1551, 1698, 1987
TatI	WGTACW	1 cut(s)	1942
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	18, 212, 1979
Tru1I	TTAA	7 cut(s)	666, 1062, 1071, 1130, 1634, 1679, 2014
Tru9I	TTAA	7 cut(s)	666, 1062, 1071, 1130, 1634, 1679, 2014
TscAI	CASTG	6 cut(s)	407, 647, 1295, 1618, 1673, 1728
TseFI	GTSAC	2 cut(s)	1267, 1609
TseI	GCWGC	8 cut(s)	204, 217, 257, 328, 1376, 1542, 1624, 1852
Tsp45I	GTSAC	2 cut(s)	1267, 1609
TspDTI	ATGAA	9 cut(s)	16, 393, 456, 1097, 1208, 1400, 1691, 1704, 1981
TspRI	CASTG	6 cut(s)	407, 647, 1295, 1618, 1673, 1728
Van91I	CCANNNNNTGG	2 cut(s)	551, 884
VpaK11BI	GGWCC	2 cut(s)	689, 1114
XapI	RAATTY	2 cut(s)	1698, 1987
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	2 cut(s)	713, 1751
XmiI	GTMKAC	1 cut(s)	1219
XmnI	GAANNNNTTC	2 cut(s)	120, 1402
XspI	CTAG	3 cut(s)	497, 738, 894
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.