Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

48701528 .. 48702594

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0334500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAAAAGAATGGCAGTGGTACTAGTACTACTACAGATTCATCAGGAGTGTGTGAGAAACTCTTCAGTGCCATTACAGTCAATCCTGCTTTTCAAACAATCCGCCGAATCTCCTCTCCTGCTAGAGATCGTTCCCCACTGGCAAACCTCAATCATGCTGCCGGAAAGAAAATAATTGATATCCAAAGCAAACCTCAACAGTCCAACAAGTCGGCAGTGATTCAGGTTCCCATCAAGTTTGAAAAGAAGGAGGTTCTGCAGCCTGCTAGTACTCCAAATGAGAATAGAGGAAAGTTGTCAACCTCACACAAGGCTGCTGCTAAGATTGAACCTGGACCAGCACAGGTGGCCCAAAAGAAGGTAATTGCTATTGAACACATTACTCATGGCCAGGAAGGCAAGAAGGAGAAGCACAAGACCAAGTCCGAGTCATTGCAGGCAAAAGGAGGAGCAGTTGGGGAGGGGCAACATATCAATGCTACTATGAAAGTTGTGAAAGCACAAGAAGTACAAGTTAAGAATGATGGTAAGAAACCAGGAGGAGTGGATATTAATGATAAGTTTTCTGAATATATCACTCGTGCTAAGATCAAGATCAGAACCATGTCATCAAAGAAGATACAAGAATCTGATCAGGAGGGTATTGATGGTGGTAAGGACGTCCATTTTTCTGCTTTTATTGATCGTGCAAAGAACAAGTTCAAATCTAGCACATCGAATGTTGGTGGTACCGGAAAGACTGTCTCATTTAAGAGAGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

254

Amino Acids

27.44

Weight (kDa)

9.93

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	663
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	728
AciI	CCGC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	5 cut(s)	22, 28, 271, 510, 730
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	5 cut(s)	95, 242, 329, 374, 703
AhlI	ACTAGT	1 cut(s)	23
AjnI	CCWGG	3 cut(s)	331, 390, 535
Alw26I	GTCTC	1 cut(s)	748
AoxI	GGCC	2 cut(s)	348, 388
ApeKI	GCWGC	4 cut(s)	158, 259, 314, 317
AseI	ATTAAT	1 cut(s)	552
Asp700I	GAANNNNTTC	2 cut(s)	62, 698
Asp718I	GGTACC	1 cut(s)	728
AspS9I	GGNCC	2 cut(s)	335, 349
AvaII	GGWCC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	728
BauI	CACGAG	1 cut(s)	579
BbvI	GCAGC	4 cut(s)	145, 271, 301, 304
BccI	CCATC	3 cut(s)	239, 518, 641
BciT130I	CCWGG	3 cut(s)	333, 392, 537
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	748
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	4 cut(s)	24, 123, 267, 708
BfmI	CTRYAG	2 cut(s)	33, 257
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	4 cut(s)	159, 260, 315, 318
BlsI	GCNGC	4 cut(s)	160, 261, 316, 319
BmcAI	AGTACT	2 cut(s)	28, 271
Bme1390I	CCNGG	3 cut(s)	333, 392, 537
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	335, 349
BmiI	GGNNCC	2 cut(s)	228, 730
BmrFI	CCNGG	3 cut(s)	333, 392, 537
BsaBI	GATNNNNATC	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	731
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	431
Bse8I	GATNNNNATC	1 cut(s)	593
BseBI	CCWGG	3 cut(s)	333, 392, 537
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	3 cut(s)	103, 462, 555
BseXI	GCAGC	4 cut(s)	145, 271, 301, 304
BshFI	GGCC	2 cut(s)	350, 390
BshNI	GGYRCC	1 cut(s)	728
BsiSI	CCGG	2 cut(s)	162, 732
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	748
BsnI	GGCC	2 cut(s)	350, 390
Bsp143I	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	350, 390
BspLI	GGNNCC	2 cut(s)	228, 730
BspMAI	CTGCAG	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
BssNI	GRCGYC	1 cut(s)	660
BssSI	CACGAG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	3 cut(s)	333, 392, 537
Bst4CI	ACNGT	3 cut(s)	79, 201, 742
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	660
BstC8I	GCNNGC	2 cut(s)	264, 438
BstDEI	CTNAG	2 cut(s)	321, 585
BstKTI	GATC	6 cut(s)	130, 591, 597, 634, 685, 760
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 396
BstNI	CCWGG	3 cut(s)	333, 392, 537
BstSCI	CCNGG	3 cut(s)	331, 390, 535
BstSFI	CTRYAG	2 cut(s)	33, 257
BstV1I	GCAGC	4 cut(s)	145, 271, 301, 304
BsuRI	GGCC	2 cut(s)	350, 390
BtsI	GCAGTG	2 cut(s)	22, 222
BtsIMutI	CAGTG	4 cut(s)	22, 73, 137, 222
Cac8I	GCNNGC	2 cut(s)	264, 438
Cfr13I	GGNCC	2 cut(s)	335, 349
Csp6I	GTAC	5 cut(s)	21, 27, 270, 509, 729
CviAII	CATG	3 cut(s)	155, 386, 604
CviJI	RGCY	4 cut(s)	262, 314, 350, 390
CviKI_1	RGCY	4 cut(s)	262, 314, 350, 390
CviQI	GTAC	5 cut(s)	21, 27, 270, 509, 729
DdeI	CTNAG	2 cut(s)	321, 585
DpnI	GATC	6 cut(s)	129, 590, 596, 633, 684, 759
DpnII	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	49
EcoRII	CCWGG	3 cut(s)	331, 390, 535
EcoRV	GATATC	1 cut(s)	181
FaeI	CATG	3 cut(s)	158, 389, 607
FaiI	YATR	6 cut(s)	156, 387, 471, 485, 573, 605
FatI	CATG	3 cut(s)	154, 385, 603
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	159, 260, 315, 318
Fsp4HI	GCNGC	4 cut(s)	159, 260, 315, 318
FspBI	CTAG	4 cut(s)	24, 123, 267, 708
GluI	GCNGC	4 cut(s)	159, 260, 315, 318
HaeIII	GGCC	2 cut(s)	350, 390
HapII	CCGG	2 cut(s)	162, 732
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	3 cut(s)	158, 389, 607
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	38, 108, 220, 428, 626
HpaII	CCGG	2 cut(s)	162, 732
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	4 cut(s)	427, 568, 599, 631
Hpy188III	TCNNGA	3 cut(s)	45, 592, 635
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	4 cut(s)	241, 352, 389, 397
HpyCH4III	ACNGT	3 cut(s)	79, 201, 742
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	3 cut(s)	259, 436, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 396
HpyF3I	CTNAG	2 cut(s)	321, 585
HpySE526I	ACGT	1 cut(s)	660
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	3 cut(s)	158, 389, 607
KpnI	GGTACC	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	4 cut(s)	145, 271, 301, 304
MaeI	CTAG	4 cut(s)	24, 123, 267, 708
MaeII	ACGT	1 cut(s)	660
MalI	GATC	6 cut(s)	129, 590, 596, 633, 684, 759
MboI	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
MboII	GAAGA	2 cut(s)	55, 628
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	2 cut(s)	174, 363
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	390
MroXI	GAANNNNTTC	2 cut(s)	62, 698
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	3 cut(s)	516, 552, 750
MslI	CAYNNNNRTG	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	390
MspI	CCGG	2 cut(s)	162, 732
MspR9I	CCNGG	3 cut(s)	333, 392, 537
MvaI	CCWGG	3 cut(s)	333, 392, 537
MwoI	GCNNNNNNNGC	2 cut(s)	347, 396
NdeII	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
NlaIII	CATG	3 cut(s)	158, 389, 607
NlaIV	GGNNCC	2 cut(s)	228, 730
PdmI	GAANNNNTTC	2 cut(s)	62, 698
PfeI	GAWTC	4 cut(s)	38, 108, 220, 626
PflFI	GACNNNGTC	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	160, 261, 316, 319
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	552
Psp6I	CCWGG	3 cut(s)	331, 390, 535
PspGI	CCWGG	3 cut(s)	331, 390, 535
PspN4I	GGNNCC	2 cut(s)	228, 730
PspPI	GGNCC	2 cut(s)	335, 349
PstI	CTGCAG	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	421
RsaI	GTAC	5 cut(s)	22, 28, 271, 510, 730
RsaNI	GTAC	5 cut(s)	21, 27, 270, 509, 729
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	516, 552, 750
SatI	GCNGC	4 cut(s)	159, 260, 315, 318
Sau3AI	GATC	6 cut(s)	127, 588, 594, 631, 682, 757
Sau96I	GGNCC	2 cut(s)	335, 349
ScaI	AGTACT	2 cut(s)	28, 271
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	333, 392, 537
SetI	ASST	9 cut(s)	150, 196, 228, 255, 305, 334, 348, 363, 663
SfcI	CTRYAG	2 cut(s)	33, 257
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	474
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	2 cut(s)	174, 363
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	4 cut(s)	24, 123, 267, 708
StyD4I	CCNGG	3 cut(s)	331, 390, 535
TaaI	ACNGT	3 cut(s)	79, 201, 742
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	1 cut(s)	716
TasI	AATT	2 cut(s)	174, 363
TatI	WGTACW	3 cut(s)	26, 269, 508
TfiI	GAWTC	4 cut(s)	38, 108, 220, 626
Tru1I	TTAA	3 cut(s)	516, 552, 750
Tru9I	TTAA	3 cut(s)	516, 552, 750
TscAI	CASTG	4 cut(s)	22, 73, 144, 222
TseI	GCWGC	4 cut(s)	158, 259, 314, 317
TspDTI	ATGAA	2 cut(s)	30, 500
TspRI	CASTG	4 cut(s)	22, 73, 144, 222
Tth111I	GACNNNGTC	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	552
XmnI	GAANNNNTTC	2 cut(s)	62, 698
XspI	CTAG	4 cut(s)	24, 123, 267, 708
ZraI	GACGTC	1 cut(s)	661
ZrmI	AGTACT	2 cut(s)	28, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.