Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Reverse (-)

12707441 .. 12707944

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTGCAACTCCATATTCAACCTCATAGACGACGACGATTTCCAAATCCCTTTGACGCCAAAGAAAACATTCCTCCTCCGCCTTGCTAATTCGCCCCAAAAACTCCATTATCAACCAAACCTAGGTCTCCAAATCCACACCAATCGAAGATTGCAGCTTGGATTCGCCGCTGAAAGCCTCGATCGGGCCACCCACGGTGCCGCCGACGCCACCGCTTCTTATTGTTCTTCTGCGTGCGTGGATGAGGAAAATGAGAAAGGATTGTCAAAACCAAAGGGGAATTTCGAGGAGATCGATGTCTTGCGAGGCCGAATGGGATTGAGGAAGAAGGCAATGGAATCGTTGAGGATGAAAATGGGGGTTTGCTGGTCCCGTGCCCTCTATGTGAAAATTGACATTTCTAGGCCGAGCAATGAAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.02

Weight (kDa)

8.72

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	4 cut(s)	82, 171, 204, 216
AcsI	RAATTY	1 cut(s)	283
AcyI	GRCGYC	2 cut(s)	59, 210
AfiI	CCNNNNNNNGG	2 cut(s)	125, 187
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	3 cut(s)	189, 310, 407
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	71
AspA2I	CCTAGG	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	189, 372
AvaII	GGWCC	1 cut(s)	372
AvrII	CCTAGG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	125, 405
BisI	GCNGC	3 cut(s)	158, 171, 204
BlnI	CCTAGG	1 cut(s)	124
BlsI	GCNGC	3 cut(s)	159, 172, 205
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	189, 372
BmiI	GGNNCC	2 cut(s)	202, 374
Bsa29I	ATCGAT	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	59, 210
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	124, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 187
Bse3DI	GCAATG	2 cut(s)	342, 421
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	124, 196
BseGI	GGATG	2 cut(s)	250, 357
BseLI	CCNNNNNNNGG	2 cut(s)	125, 187
BseMI	GCAATG	2 cut(s)	342, 421
BseRI	GAGGAG	2 cut(s)	68, 305
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	191, 312, 409
BshNI	GGYRCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	125, 187
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	3 cut(s)	191, 312, 409
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	184, 294
BspACI	CCGC	4 cut(s)	82, 171, 204, 216
BspANI	GGCC	3 cut(s)	191, 312, 409
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	202, 374
BspT107I	GGYRCC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	342, 421
BssECI	CCNNGG	2 cut(s)	124, 196
BssMI	GATC	2 cut(s)	184, 294
BssNI	GRCGYC	2 cut(s)	59, 210
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	200
BstACI	GRCGYC	2 cut(s)	59, 210
BstC8I	GCNNGC	2 cut(s)	7, 238
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	250, 357
BstKTI	GATC	2 cut(s)	187, 297
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	184, 294
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	191, 312, 409
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	250, 357
Cac8I	GCNNGC	2 cut(s)	7, 238
Cfr13I	GGNCC	2 cut(s)	189, 372
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	2 cut(s)	67, 218
CviJI	RGCY	6 cut(s)	5, 160, 180, 191, 312, 409
CviKI_1	RGCY	6 cut(s)	5, 160, 180, 191, 312, 409
DpnI	GATC	2 cut(s)	186, 296
DpnII	GATC	2 cut(s)	184, 294
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaiI	YATR	3 cut(s)	17, 29, 387
FaqI	GGGAC	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	158, 171, 204
FokI	GGATG	2 cut(s)	257, 364
Fsp4HI	GCNGC	3 cut(s)	158, 171, 204
FspBI	CTAG	2 cut(s)	125, 405
GluI	GCNGC	3 cut(s)	158, 171, 204
HaeIII	GGCC	3 cut(s)	191, 312, 409
HgaI	GACGC	2 cut(s)	67, 218
Hin1I	GRCGYC	2 cut(s)	59, 210
HinfI	GANTC	2 cut(s)	165, 341
Hpy99I	CGWCG	3 cut(s)	38, 41, 212
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	9, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Hsp92I	GRCGYC	2 cut(s)	59, 210
Kzo9I	GATC	2 cut(s)	184, 294
LpnPI	CCDG	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	125, 405
MalI	GATC	2 cut(s)	186, 296
MboI	GATC	2 cut(s)	184, 294
MboII	GAAGA	3 cut(s)	162, 222, 340
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	3 cut(s)	91, 283, 393
MroXI	GAANNNNTTC	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	184, 294
NlaIV	GGNNCC	2 cut(s)	202, 374
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 294
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	165, 341
PkrI	GCNGC	3 cut(s)	159, 172, 205
Ple19I	CGATCG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	202, 374
PspPI	GGNCC	2 cut(s)	189, 372
PvuI	CGATCG	1 cut(s)	187
SatI	GCNGC	3 cut(s)	158, 171, 204
Sau3AI	GATC	2 cut(s)	184, 294
Sau96I	GGNCC	2 cut(s)	189, 372
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	4 cut(s)	27, 126, 130, 162
SinI	GGWCC	1 cut(s)	372
Sse9I	AATT	3 cut(s)	91, 283, 393
SsiI	CCGC	4 cut(s)	82, 171, 204, 216
SspMI	CTAG	2 cut(s)	125, 405
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	4 cut(s)	148, 183, 288, 297
TasI	AATT	3 cut(s)	91, 283, 393
TauI	GCSGC	2 cut(s)	173, 206
TfiI	GAWTC	2 cut(s)	165, 341
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	283
XmaJI	CCTAGG	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	125, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.