Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007437.1

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 736

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

taccctgtggtattgtcaaaaccaaaaggggggtatttgtggaattcgatagagtctaggttgattaagcctggagccgattggggttttggttctggtaatggcgaggatttcgaggagatcgatgtgctgctgaggctgaatgggattgaggaagaaggcgatggaatcattgagtatgaaaatgggggtttggtggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

67

Amino Acids

7.31

Weight (kDa)

4.15

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	72
BfaI	CTAG	2 cut(s)	57, 202
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	117
BshVI	ATCGAT	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	76
BssMI	GATC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	123
CviJI	RGCY	3 cut(s)	70, 77, 139
CviKI_1	RGCY	3 cut(s)	70, 77, 139
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	70
FaiI	YATR	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	57, 202
GluI	GCNGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	93
HinfI	GANTC	2 cut(s)	53, 168
HpyAV	CCTTC	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	18, 57, 81, 84
Lsp1109I	GCAGC	1 cut(s)	117
MaeI	CTAG	2 cut(s)	57, 202
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	100, 109, 129, 145
MseI	TTAA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	120
NlaIV	GGNNCC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	1 cut(s)	62
SgeI	CNNG	7 cut(s)	17, 69, 83, 84, 108, 118, 127
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	2 cut(s)	57, 202
StyD4I	CCNGG	1 cut(s)	70
TaqI	TCGA	3 cut(s)	47, 114, 123
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	43
XspI	CTAG	2 cut(s)	57, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.