Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Forward (+)

15319356 .. 15327013

Gene Structure 7658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCCAATCGAAGATTGCAGCTTGGATTTGCTGCCTGAAAGCCTCAACTGGGCCACCCGCGATGCCGCTGACGCCACCGCTTCTTATTGTTCTTCTAAGTGCGTGGATGAGGAAAATGAGAAAGGATTGTCAAAACCAAAAGGGGGGAATTTGTGGAATTCGATAGAGTCTAGGTTGATTAAGCTTAGAGCCGATTGGGGTTTTGGTTCTGGTAATGGCGAGGATTTCGAGGAGATCGATGTGCTGCTGAGGCTGAATGGGATTGAGGAAGAAGGCGATAGAATCTTTGAAGATGAAAATGGGGTTTTGGTGATCCAGTGCCCTCTATGTGAAATTGACATTTCTGAGCTGAGCAATGAAGAAAGACAGCTCCACACTAATGATTGTCTTGACAAACAACAAGTTCGACCTCCAGAGGAACAAGAGGCTGATGATCCGATGGGGCCTCGAGTTTCTGGGCAAAAGTGTGACGATGATGACACAGCTTGTGTTGGCTGGTGGACCTCCGCGCACCCAATCCTCATCGACCAAGCTCTCTTTTGTCTCAACAAGCGTGAATTCTCATTCAAGATCCAGCTCATCATCTTCCTTGAAGAGTTCTCCGGCTCGCACTTCACATCTGACCCAGATTCTCTTCTTCTTTTGCTCTCTACTTACGAGTTCAGGTCAAGTGTTCTCACAGGACCCGAAAATTATGCTTCTCAGCCTGTTGTGGACAAATTCAGTAGCATGTCTACTCGGGCTGGTCATGCACGTGCATGTGCTCCTCTTTTCTTTTCAATTAACCATTTGGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

266

Amino Acids

29.74

Weight (kDa)

4.36

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	2 cut(s)	60, 509
AciI	CCGC	4 cut(s)	58, 66, 78, 507
AclWI	GGATC	3 cut(s)	307, 428, 565
AcsI	RAATTY	4 cut(s)	148, 157, 557, 719
AcvI	CACGTG	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	49, 143
AgsI	TTSAA	4 cut(s)	290, 568, 593, 780
AluBI	AGCT	7 cut(s)	21, 184, 349, 370, 485, 533, 577
AluI	AGCT	7 cut(s)	21, 184, 349, 370, 485, 533, 577
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	3 cut(s)	307, 428, 565
Ama87I	CYCGRG	2 cut(s)	447, 738
AoxI	GGCC	2 cut(s)	51, 443
ApeKI	GCWGC	3 cut(s)	18, 31, 244
ApoI	RAATTY	4 cut(s)	148, 157, 557, 719
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	4 cut(s)	51, 443, 501, 683
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	2 cut(s)	447, 738
AvaII	GGWCC	2 cut(s)	501, 683
BaeGI	GKGCMC	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	766
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	18, 30, 231
BccI	CCATC	1 cut(s)	433
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	4 cut(s)	19, 32, 66, 245
BlpI	GCTNAGC	1 cut(s)	350
BlsI	GCNGC	4 cut(s)	20, 33, 67, 246
Bme18I	GGWCC	2 cut(s)	501, 683
BmeT110I	CYCGRG	2 cut(s)	447, 738
BmgT120I	GGNCC	4 cut(s)	51, 443, 501, 683
BmiI	GGNNCC	2 cut(s)	444, 685
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 143
Bse1I	ACTGG	2 cut(s)	53, 316
Bse3DI	GCAATG	1 cut(s)	361
BseCI	ATCGAT	1 cut(s)	237
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	49, 143
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	4 cut(s)	239, 336, 341, 716
BseNI	ACTGG	2 cut(s)	53, 316
BseRI	GAGGAG	2 cut(s)	245, 756
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	18, 30, 231
Bsh1236I	CGCG	2 cut(s)	60, 509
BshFI	GGCC	2 cut(s)	53, 445
BshVI	ATCGAT	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	766
BsiHKCI	CYCGRG	2 cut(s)	447, 738
BsiSI	CCGG	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	49, 143
BsmAI	GTCTC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	53, 445
BsoBI	CYCGRG	2 cut(s)	447, 738
Bsp1286I	GDGCHC	2 cut(s)	323, 766
Bsp143I	GATC	4 cut(s)	234, 312, 433, 570
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	4 cut(s)	58, 66, 78, 507
BspANI	GGCC	2 cut(s)	53, 445
BspCNI	CTCAG	4 cut(s)	240, 337, 342, 715
BspDI	ATCGAT	1 cut(s)	237
BspFNI	CGCG	2 cut(s)	60, 509
BspLI	GGNNCC	2 cut(s)	444, 685
BspPI	GGATC	3 cut(s)	307, 428, 565
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	53, 316
BssMI	GATC	4 cut(s)	234, 312, 433, 570
BssNI	GRCGYC	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	588, 639
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	608
BstDEI	CTNAG	6 cut(s)	96, 185, 248, 345, 350, 702
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	2 cut(s)	60, 509
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	4 cut(s)	237, 315, 436, 573
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	234, 312, 433, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 250, 749
BstNSI	RCATGY	2 cut(s)	733, 762
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	2 cut(s)	60, 509
BstV1I	GCAGC	3 cut(s)	18, 30, 231
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	53, 445
BsuTUI	ATCGAT	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	608
CfoI	GCGC	1 cut(s)	511
Cfr13I	GGNCC	4 cut(s)	51, 443, 501, 683
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	80
CviAII	CATG	3 cut(s)	730, 749, 759
DdeI	CTNAG	6 cut(s)	96, 185, 248, 345, 350, 702
DpnI	GATC	4 cut(s)	236, 314, 435, 572
DpnII	GATC	4 cut(s)	234, 312, 433, 570
Eam1104I	CTCTTC	2 cut(s)	588, 639
EarI	CTCTTC	2 cut(s)	588, 639
Eco47I	GGWCC	2 cut(s)	501, 683
Eco72I	CACGTG	1 cut(s)	755
Eco88I	CYCGRG	2 cut(s)	447, 738
EcoO109I	RGGNCCY	2 cut(s)	443, 683
EcoRI	GAATTC	2 cut(s)	157, 557
FaeI	CATG	3 cut(s)	733, 752, 762
FaiI	YATR	5 cut(s)	328, 696, 731, 750, 760
FatI	CATG	3 cut(s)	729, 748, 758
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	4 cut(s)	19, 32, 66, 245
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	19, 32, 66, 245
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	4 cut(s)	19, 32, 66, 245
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	53, 445
HapII	CCGG	1 cut(s)	603
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	733, 752, 762
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	167, 282, 629
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	501, 715, 735
Hpy188I	TCNGA	3 cut(s)	346, 438, 622
Hpy188III	TCNNGA	3 cut(s)	389, 413, 568
Hpy8I	GTNNAC	3 cut(s)	501, 715, 735
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	754
HpyCH4V	TGCA	3 cut(s)	18, 752, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 250, 749
HpyF3I	CTNAG	6 cut(s)	96, 185, 248, 345, 350, 702
HpySE526I	ACGT	1 cut(s)	754
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	733, 752, 762
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	4 cut(s)	234, 312, 433, 570
LmnI	GCTCC	2 cut(s)	375, 769
Lsp1109I	GCAGC	3 cut(s)	18, 30, 231
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	754
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	4 cut(s)	236, 314, 435, 572
MboI	GATC	4 cut(s)	234, 312, 433, 570
MboII	GAAGA	9 cut(s)	23, 84, 281, 302, 371, 577, 605, 626, 629
MflI	RGATCY	1 cut(s)	570
MhlI	GDGCHC	2 cut(s)	323, 766
MluCI	AATT	8 cut(s)	148, 157, 333, 557, 691, 719, 780, 796
MlyI	GAGTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	180, 783, 795
MslI	CAYNNNNRTG	3 cut(s)	378, 753, 757
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	603
MvnI	CGCG	2 cut(s)	60, 509
MwoI	GCNNNNNNNGC	3 cut(s)	71, 250, 749
NdeII	GATC	4 cut(s)	234, 312, 433, 570
NlaIII	CATG	3 cut(s)	733, 752, 762
NlaIV	GGNNCC	2 cut(s)	444, 685
NmuCI	GTSAC	1 cut(s)	467
NspI	RCATGY	2 cut(s)	733, 762
PaeR7I	CTCGAG	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	282, 629
PkrI	GCNGC	4 cut(s)	20, 33, 67, 246
PleI	GAGTC	1 cut(s)	175
PmaCI	CACGTG	1 cut(s)	755
PmlI	CACGTG	1 cut(s)	755
PpsI	GAGTC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	755
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
PspCI	CACGTG	1 cut(s)	755
PspN4I	GGNNCC	2 cut(s)	444, 685
PspPI	GGNCC	4 cut(s)	51, 443, 501, 683
PspPPI	RGGWCCY	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	570
RseI	CAYNNNNRTG	3 cut(s)	378, 753, 757
SaqAI	TTAA	3 cut(s)	180, 783, 795
SatI	GCNGC	4 cut(s)	19, 32, 66, 245
Sau3AI	GATC	4 cut(s)	234, 312, 433, 570
Sau96I	GGNCC	4 cut(s)	51, 443, 501, 683
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	323, 766
SfaNI	GCATC	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	501, 683
SlaI	CTCGAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	3 cut(s)	378, 753, 757
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	8 cut(s)	148, 157, 333, 557, 691, 719, 780, 796
SsiI	CCGC	4 cut(s)	58, 66, 78, 507
SspMI	CTAG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	757
TaqI	TCGA	7 cut(s)	9, 161, 228, 237, 406, 448, 525
TasI	AATT	8 cut(s)	148, 157, 333, 557, 691, 719, 780, 796
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	282, 629
Tru1I	TTAA	3 cut(s)	180, 783, 795
Tru9I	TTAA	3 cut(s)	180, 783, 795
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	3 cut(s)	18, 31, 244
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	309, 372
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	501, 683
XapI	RAATTY	4 cut(s)	148, 157, 557, 719
XceI	RCATGY	2 cut(s)	733, 762
XhoI	CTCGAG	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	734
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.