Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Reverse (-)

63406508 .. 63410379

Gene Structure 3872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG459900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGGCTTCCAAATCCAGATTCAACCTCATAGACGACGACGACGACGATTTCCAAACCCCTCTGACCCAAACCGCCACAGCTCGCACGCCCTTCAAAAAGCCCAAGCTCTCCGGCAAAGAAAACGTTCCTCCTCCGCTCTGCTTCACCCACAAAGACTCCATTTTGAACCAAACCCAGGTCTCCAAATCCACGCCAATCGAAGATTGCAGCTTGGATTCGCTGCCTGAAAGCCTCAACTGGGCCACCCACGGCGCCGTGGGTGAGGAAAATGAGAAAGGGCAAGGGGGGTATTTGCGGAATTCGATAGAGTCTAGGTTGATTAAGCCCGGAGCCGATTGGGGTTTCGGTTCTGGTAATGACGAGGAGTTCGAGGAGATTGATGTGCTGCTGAGGCTGAATGGGATTGAGGAAGAAGGGGAAGGAATTGTTGAGGATGAAAATGGGGGTTTGGTGGTTCAGTGCCCTCTATGTGAGATTGACATTTCTGAGCTGAGCAATGAAGAAAGACAGCTCCACACTAATGATTGTCTTGACAAACAACAAGTTCGACCTCTAGACGAACAAGAGGGGTCTGGAATTGCTGATGATCCGATGGGGCCTCGAGTTTCTGGGCAAGTTGTTGAGTGGCTACGCGGTCTTGGTTTAGACAAGTATGTGGAAGTTTTTGTAAGGGAAGAGATTGATTGGGATGCTCTACATTGGCTCACAGAAGAGGATTTGTTTAACATTGGCATTACGGCACTTGGTCCGCGTAAGAAGATTGTGCATGCACTCGCTCAACTTGGACAAGGGACTAGCAATGGAATTGAAGCACAAACTGCACAGCCAAGAAAAAGGAGTGCCAATGGGGTCGAGGTGCTCGATGATGCATTGGAAGGAACAGTTGGTGATAGTAGTAAATCAGCTTCAAACAAGTTGATTACGGATTACTTTCCGGGATTTGGTGGTGCTAGGAAGCATGTCTGCACCACCTCCAGAGAACAGCAAAGGGTAGAAAAGCGTCAGTCAGGTGCTGGTCATAAACGTGGTTTGGTGAAAAATCATGCCACAAATAGGAAACTCAGGGATGTTCCCTCATGGTGTTGTGTACCAGGAACACCATTTCGAGTAGATGCTTTTAAATATCTTAGACGGGATTGTTCTCATTGGTTTCTCACTCACTTTCATATGGACCATTATCAAGGTTTAACAAAGTCCTTTTGTCATGGAAAGATCTATTGCTCCTCCATTACAGCTAAGCTTGTAAACATGAAGCTTGGCATTCCATGGGACAGTATACAAGTTGTACCCCTCAACCGAAAGATCAATATTGCAGGTATTGATGTCACCTGCTTGGATGCAAACCACTGCCCTGGTTCCATAATTATACTTTTTGAACCGCCTAACAGTAAGGCTGTTCTACATACAGGGGACTTTCGCTTTAGTGAGGATGCAGCAAGCATGACTGTTTTGCAAACATCTTCTATTCATACGCTCATCCTTGATACCACTTACTGTAACCCACAGTATGACTTTCCAAAGCAGGAGGCTGTAATTCAGTTTGTCGTTGATGCAATTCAAGCTGAAACTTTCAATCCTAAAACTCTATTTCTGATTGGCAGCTACACAATTGGAAAGGAACGCCTTTACTTGGAGGTTGCTCGTGTGCTCCGGAAAAAGATTTATGTCACTGCTGGAAAGCTGCATATTTTAAAATGTTTGGATTTTCCTGAGGAGGATATGCAGTGGTTTACATTAAACGAACATGAAAGCCAAATTCATGTGGTGCCGATGTGGACACTGGCAAGCTTCAAGCGACTGAAGCATGTATCAAATCAATATGCGAGTCGATACAGTCTTATTGTTGCTTTCTCTCCAACTGGTTGGACTTTTGGTAAAGGAAAGAAGAAGTCTCCTGGAAGCAGGTGGCAGCAGGGTACCATTATAAGGTATGAGGTGCCATATAGTGAGCATTCGAGCTTTACAGAACTCAGACAGTTTGTGAAGCTTGTGTCCCCTGTTCAAATAATACCAAGTGTGAACAATCATGGCCCAGATTCAGCGAATTCCATGATTTCTCTTCTCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000715 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016233 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0031848 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRMBL Lactamase_B_2 SAM_1

Protein Analysis

690

Amino Acids

77.18

Weight (kDa)

5.91

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_2	PF07647	204 - 260	5.4e-11	SAM domain (Sterile alpha motif)
SAM_1	PF00536	205 - 261	1.6e-16	SAM domain (Sterile alpha motif)
DRMBL	PF07522	573 - 676	1.6e-26	DNA repair metallo-beta-lactamase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1925
AarI	CACCTGC	2 cut(s)	1337, 1893
Acc36I	ACCTGC	3 cut(s)	1304, 1337, 1893
Acc65I	GGTACC	1 cut(s)	1916
AccB1I	GGYRCC	4 cut(s)	251, 1765, 1916, 1936
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	1276
AccII	CGCG	2 cut(s)	633, 751
AccIII	TCCGGA	1 cut(s)	1650
AciI	CCGC	6 cut(s)	72, 134, 295, 633, 749, 1379
AclI	AACGTT	1 cut(s)	123
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	3 cut(s)	298, 1755, 2044
AcuI	CTGAAG	1 cut(s)	1820
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	1089, 1287, 1918
AfiI	CCNNNNNNNGG	6 cut(s)	175, 238, 941, 1053, 1630, 1926
AjnI	CCWGG	4 cut(s)	174, 1090, 1351, 1894
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 867, 899
Alw21I	GWGCWC	2 cut(s)	861, 1650
Alw26I	GTCTC	2 cut(s)	184, 1896
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	1013
Ama87I	CYCGRG	1 cut(s)	600
Aor13HI	TCCGGA	1 cut(s)	1650
AoxI	GGCC	3 cut(s)	240, 596, 2029
ApeKI	GCWGC	7 cut(s)	207, 220, 385, 1433, 1599, 1681, 1909
ApoI	RAATTY	3 cut(s)	298, 1755, 2044
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	1916
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	5 cut(s)	240, 596, 746, 1171, 2030
AsuC2I	CCSGG	2 cut(s)	327, 936
AsuHPI	GGTGA	5 cut(s)	136, 272, 899, 1045, 1318
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	2 cut(s)	746, 1171
AxyI	CCTNAGG	1 cut(s)	1710
BaeGI	GKGCMC	1 cut(s)	464
BanI	GGYRCC	4 cut(s)	251, 1765, 1916, 1936
BarI	GAAGNNNNNNTAC	2 cut(s)	889, 921
BauI	CACGAG	1 cut(s)	1641
Bbv12I	GWGCWC	2 cut(s)	861, 1650
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	7 cut(s)	207, 219, 372, 1445, 1611, 1668, 1921
BccI	CCATC	1 cut(s)	586
BceAI	ACGGC	3 cut(s)	239, 265, 753
BciT130I	CCWGG	4 cut(s)	176, 1092, 1353, 1896
BcnI	CCSGG	2 cut(s)	327, 936
BcoDI	GTCTC	2 cut(s)	184, 1896
BfaI	CTAG	4 cut(s)	312, 554, 795, 951
BfoI	RGCGCY	1 cut(s)	255
BfuAI	ACCTGC	3 cut(s)	1304, 1337, 1893
BglII	AGATCT	1 cut(s)	1212
BisI	GCNGC	7 cut(s)	208, 221, 386, 1434, 1600, 1682, 1910
BlpI	GCTNAGC	2 cut(s)	491, 1236
BlsI	GCNGC	7 cut(s)	209, 222, 387, 1435, 1601, 1683, 1911
Bme1390I	CCNGG	6 cut(s)	176, 327, 936, 1092, 1353, 1896
Bme18I	GGWCC	2 cut(s)	746, 1171
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	5 cut(s)	240, 596, 746, 1171, 2030
BmiI	GGNNCC	7 cut(s)	253, 331, 597, 1357, 1767, 1918, 1938
BmrFI	CCNGG	6 cut(s)	176, 327, 936, 1092, 1353, 1896
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	6 cut(s)	679, 856, 1102, 1327, 1420, 1540
BmuI	ACTGGG	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	958
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu1102I	GCTNAGC	2 cut(s)	491, 1236
BpuMI	CCSGG	2 cut(s)	327, 936
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	5 cut(s)	174, 247, 255, 1265, 1351
BsaWI	WCCGGW	1 cut(s)	1650
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	6 cut(s)	175, 238, 941, 1053, 1630, 1926
Bse1I	ACTGG	3 cut(s)	242, 1785, 1864
Bse21I	CCTNAGG	1 cut(s)	1710
Bse3DI	GCAATG	2 cut(s)	502, 805
BseAI	TCCGGA	1 cut(s)	1650
BseBI	CCWGG	4 cut(s)	176, 1092, 1353, 1896
BseDI	CCNNGG	5 cut(s)	174, 247, 255, 1265, 1351
BseGI	GGATG	6 cut(s)	439, 694, 1072, 1342, 1435, 1476
BseLI	CCNNNNNNNGG	6 cut(s)	175, 238, 941, 1053, 1630, 1926
BseMI	GCAATG	2 cut(s)	502, 805
BseMII	CTCAG	6 cut(s)	380, 477, 482, 1075, 1701, 1984
BseNI	ACTGG	3 cut(s)	242, 1785, 1864
BseRI	GAGGAG	5 cut(s)	120, 377, 386, 1213, 1727
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	7 cut(s)	207, 219, 372, 1445, 1611, 1668, 1921
BsgI	GTGCAG	2 cut(s)	804, 949
Bsh1236I	CGCG	2 cut(s)	633, 751
BshFI	GGCC	3 cut(s)	242, 598, 2031
BshNI	GGYRCC	4 cut(s)	251, 1765, 1916, 1936
BsiHKAI	GWGCWC	2 cut(s)	861, 1650
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	4 cut(s)	111, 327, 935, 1651
BslFI	GGGAC	4 cut(s)	805, 1283, 1424, 1978
BslI	CCNNNNNNNGG	6 cut(s)	175, 238, 941, 1053, 1630, 1926
BsmAI	GTCTC	2 cut(s)	184, 1896
BsmFI	GGGAC	4 cut(s)	805, 1283, 1424, 1978
BsmI	GAATGC	2 cut(s)	1260, 1951
BsnI	GGCC	3 cut(s)	242, 598, 2031
Bso31I	GGTCTC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	600
Bsp1286I	GDGCHC	3 cut(s)	464, 861, 1650
Bsp13I	TCCGGA	1 cut(s)	1650
Bsp143I	GATC	3 cut(s)	586, 1212, 1302
Bsp1720I	GCTNAGC	2 cut(s)	491, 1236
Bsp19I	CCATGG	1 cut(s)	1265
BspACI	CCGC	6 cut(s)	72, 134, 295, 633, 749, 1379
BspANI	GGCC	3 cut(s)	242, 598, 2031
BspCNI	CTCAG	6 cut(s)	381, 478, 483, 1074, 1702, 1983
BspEI	TCCGGA	1 cut(s)	1650
BspFNI	CGCG	2 cut(s)	633, 751
BspLI	GGNNCC	7 cut(s)	253, 331, 597, 1357, 1767, 1918, 1938
BspMI	ACCTGC	3 cut(s)	1304, 1337, 1893
BspPI	GGATC	1 cut(s)	581
BspT107I	GGYRCC	4 cut(s)	251, 1765, 1916, 1936
BspTNI	GGTCTC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	502, 805
BsrI	ACTGG	3 cut(s)	242, 1785, 1864
BssECI	CCNNGG	5 cut(s)	174, 247, 255, 1265, 1351
BssMI	GATC	3 cut(s)	586, 1212, 1302
BssNAI	GTATAC	1 cut(s)	1277
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	1641
BssT1I	CCWWGG	1 cut(s)	1265
Bst1107I	GTATAC	1 cut(s)	1277
Bst2BI	CACGAG	1 cut(s)	1641
Bst2UI	CCWGG	4 cut(s)	176, 1092, 1353, 1896
Bst4CI	ACNGT	8 cut(s)	883, 1274, 1388, 1447, 1496, 1506, 1835, 1977
Bst6I	CTCTTC	3 cut(s)	669, 705, 2064
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	5 cut(s)	82, 86, 768, 1438, 1786
BstDEI	CTNAG	8 cut(s)	389, 486, 491, 1061, 1127, 1236, 1710, 1970
BstDSI	CCRYGG	3 cut(s)	247, 255, 1265
BstF5I	GGATG	6 cut(s)	439, 694, 1072, 1342, 1435, 1476
BstFNI	CGCG	2 cut(s)	633, 751
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	589, 1215, 1305
BstMAI	GTCTC	2 cut(s)	184, 1896
BstMBI	GATC	3 cut(s)	586, 1212, 1302
BstMWI	GCNNNNNNNGC	4 cut(s)	391, 818, 1559, 1801
BstNI	CCWGG	4 cut(s)	176, 1092, 1353, 1896
BstNSI	RCATGY	3 cut(s)	770, 962, 1808
BstSCI	CCNGG	6 cut(s)	174, 325, 934, 1090, 1351, 1894
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	2 cut(s)	633, 751
BstV1I	GCAGC	7 cut(s)	207, 219, 372, 1445, 1611, 1668, 1921
BstX2I	RGATCY	1 cut(s)	1212
BstXI	CCANNNNNNTGG	2 cut(s)	1352, 1863
BstYI	RGATCY	1 cut(s)	1212
BstZ17I	GTATAC	1 cut(s)	1277
Bsu36I	CCTNAGG	1 cut(s)	1710
BsuRI	GGCC	3 cut(s)	242, 598, 2031
BtgI	CCRYGG	3 cut(s)	247, 255, 1265
BtsCI	GGATG	6 cut(s)	439, 694, 1072, 1342, 1435, 1476
BtsI	GCAGTG	3 cut(s)	1345, 1668, 1730
BtsIMutI	CAGTG	5 cut(s)	464, 1345, 1668, 1730, 1778
BveI	ACCTGC	3 cut(s)	1304, 1337, 1893
Cac8I	GCNNGC	5 cut(s)	82, 86, 768, 1438, 1786
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	5 cut(s)	240, 596, 746, 1171, 2030
CseI	GACGC	1 cut(s)	989
Csp6I	GTAC	3 cut(s)	1088, 1286, 1917
CviQI	GTAC	3 cut(s)	1088, 1286, 1917
DdeI	CTNAG	8 cut(s)	389, 486, 491, 1061, 1127, 1236, 1710, 1970
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	3 cut(s)	588, 1214, 1304
DpnII	GATC	3 cut(s)	586, 1212, 1302
DraI	TTTAAA	2 cut(s)	1120, 1692
Eam1104I	CTCTTC	3 cut(s)	669, 705, 2064
EarI	CTCTTC	3 cut(s)	669, 705, 2064
Eco130I	CCWWGG	1 cut(s)	1265
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	746, 1171
Eco57I	CTGAAG	1 cut(s)	1820
Eco81I	CCTNAGG	1 cut(s)	1710
Eco88I	CYCGRG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	2 cut(s)	298, 2044
EcoRII	CCWGG	4 cut(s)	174, 1090, 1351, 1894
EcoT14I	CCWWGG	1 cut(s)	1265
EcoT22I	ATGCAT	1 cut(s)	871
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	1265
FaqI	GGGAC	4 cut(s)	805, 1283, 1424, 1978
FauNDI	CATATG	1 cut(s)	1167
FblI	GTMKAC	1 cut(s)	1276
Fnu4HI	GCNGC	7 cut(s)	208, 221, 386, 1434, 1600, 1682, 1910
FokI	GGATG	6 cut(s)	446, 701, 1079, 1349, 1442, 1463
Fsp4HI	GCNGC	7 cut(s)	208, 221, 386, 1434, 1600, 1682, 1910
FspBI	CTAG	4 cut(s)	312, 554, 795, 951
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	7 cut(s)	208, 221, 386, 1434, 1600, 1682, 1910
GsuI	CTGGAG	1 cut(s)	958
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	242, 598, 2031
HapII	CCGG	4 cut(s)	111, 327, 935, 1651
HgaI	GACGC	1 cut(s)	989
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HindIII	AAGCTT	4 cut(s)	1238, 1253, 1786, 1985
HinfI	GANTC	6 cut(s)	18, 155, 215, 308, 1825, 2036
HpaII	CCGG	4 cut(s)	111, 327, 935, 1651
HphI	GGTGA	5 cut(s)	136, 272, 899, 1045, 1318
Hpy166II	GTNNAC	6 cut(s)	1088, 1246, 1277, 1731, 1776, 2020
Hpy188I	TCNGA	5 cut(s)	63, 487, 591, 1593, 1973
Hpy188III	TCNNGA	7 cut(s)	15, 530, 554, 573, 975, 1651, 1709
Hpy8I	GTNNAC	6 cut(s)	1088, 1246, 1277, 1731, 1776, 2020
Hpy99I	CGWCG	4 cut(s)	38, 41, 44, 47
HpyAV	CCTTC	4 cut(s)	100, 407, 413, 869
HpyCH4III	ACNGT	8 cut(s)	883, 1274, 1388, 1447, 1496, 1506, 1835, 1977
HpyCH4IV	ACGT	2 cut(s)	123, 1024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	391, 818, 1559, 1801
HpyF3I	CTNAG	8 cut(s)	389, 486, 491, 1061, 1127, 1236, 1710, 1970
HpySE526I	ACGT	2 cut(s)	123, 1024
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
Kpn2I	TCCGGA	1 cut(s)	1650
KpnI	GGTACC	1 cut(s)	1920
Kzo9I	GATC	3 cut(s)	586, 1212, 1302
LmnI	GCTCC	4 cut(s)	329, 516, 1226, 1653
Lsp1109I	GCAGC	7 cut(s)	207, 219, 372, 1445, 1611, 1668, 1921
LweI	GCATC	6 cut(s)	679, 856, 1102, 1327, 1420, 1540
MaeI	CTAG	4 cut(s)	312, 554, 795, 951
MaeII	ACGT	2 cut(s)	123, 1024
MaeIII	GTNAC	3 cut(s)	1324, 1496, 1666
MalI	GATC	3 cut(s)	588, 1214, 1304
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	3 cut(s)	586, 1212, 1302
MfeI	CAATTG	1 cut(s)	1608
MflI	RGATCY	1 cut(s)	1212
MhlI	GDGCHC	3 cut(s)	464, 861, 1650
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	3 cut(s)	149, 317, 1834
MmeI	TCCRAC	2 cut(s)	1844, 1880
Mph1103I	ATGCAT	1 cut(s)	871
MroI	TCCGGA	1 cut(s)	1650
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	7 cut(s)	321, 723, 1119, 1187, 1691, 1736, 2071
MslI	CAYNNNNRTG	2 cut(s)	519, 1023
MspI	CCGG	4 cut(s)	111, 327, 935, 1651
MspR9I	CCNGG	6 cut(s)	176, 327, 936, 1092, 1353, 1896
MunI	CAATTG	1 cut(s)	1608
Mva1269I	GAATGC	2 cut(s)	1260, 1951
MvaI	CCWGG	4 cut(s)	176, 1092, 1353, 1896
MvnI	CGCG	2 cut(s)	633, 751
MwoI	GCNNNNNNNGC	4 cut(s)	391, 818, 1559, 1801
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	327, 936
NcoI	CCATGG	1 cut(s)	1265
NdeI	CATATG	1 cut(s)	1167
NdeII	GATC	3 cut(s)	586, 1212, 1302
NlaIV	GGNNCC	7 cut(s)	253, 331, 597, 1357, 1767, 1918, 1938
NmuCI	GTSAC	2 cut(s)	1324, 1666
NsiI	ATGCAT	1 cut(s)	871
NspI	RCATGY	3 cut(s)	770, 962, 1808
PaeI	GCATGC	1 cut(s)	770
PaeR7I	CTCGAG	1 cut(s)	600
PaqCI	CACCTGC	2 cut(s)	1337, 1893
PcsI	WCGNNNNNNNCGW	4 cut(s)	39, 42, 366, 858
PctI	GAATGC	2 cut(s)	1260, 1951
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	18, 215, 2036
PfoI	TCCNGGA	2 cut(s)	934, 1894
PkrI	GCNGC	7 cut(s)	209, 222, 387, 1435, 1601, 1683, 1911
PleI	GAGTC	3 cut(s)	149, 316, 1833
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	3 cut(s)	149, 316, 1833
PsiI	TTATAA	1 cut(s)	1925
Psp1406I	AACGTT	1 cut(s)	123
Psp6I	CCWGG	4 cut(s)	174, 1090, 1351, 1894
PspGI	CCWGG	4 cut(s)	174, 1090, 1351, 1894
PspN4I	GGNNCC	7 cut(s)	253, 331, 597, 1357, 1767, 1918, 1938
PspPI	GGNCC	5 cut(s)	240, 596, 746, 1171, 2030
PspXI	VCTCGAGB	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	1 cut(s)	1212
RsaI	GTAC	3 cut(s)	1089, 1287, 1918
RsaNI	GTAC	3 cut(s)	1088, 1286, 1917
RseI	CAYNNNNRTG	2 cut(s)	519, 1023
SaqAI	TTAA	7 cut(s)	321, 723, 1119, 1187, 1691, 1736, 2071
SatI	GCNGC	7 cut(s)	208, 221, 386, 1434, 1600, 1682, 1910
Sau3AI	GATC	3 cut(s)	586, 1212, 1302
Sau96I	GGNCC	5 cut(s)	240, 596, 746, 1171, 2030
SchI	GAGTC	3 cut(s)	149, 317, 1834
ScrFI	CCNGG	6 cut(s)	176, 327, 936, 1092, 1353, 1896
SduI	GDGCHC	3 cut(s)	464, 861, 1650
SfaNI	GCATC	6 cut(s)	679, 856, 1102, 1327, 1420, 1540
SfoI	GGCGCC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	600
SinI	GGWCC	2 cut(s)	746, 1171
SlaI	CTCGAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	2 cut(s)	519, 1023
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
SphI	GCATGC	1 cut(s)	770
SsiI	CCGC	6 cut(s)	72, 134, 295, 633, 749, 1379
SspDI	GGCGCC	1 cut(s)	251
SspI	AATATT	1 cut(s)	1309
SspMI	CTAG	4 cut(s)	312, 554, 795, 951
StyD4I	CCNGG	6 cut(s)	174, 325, 934, 1090, 1351, 1894
StyI	CCWWGG	1 cut(s)	1265
TaaI	ACNGT	8 cut(s)	883, 1274, 1388, 1447, 1496, 1506, 1835, 1977
TaiI	ACGT	2 cut(s)	126, 1027
TfiI	GAWTC	3 cut(s)	18, 215, 2036
Tru1I	TTAA	7 cut(s)	321, 723, 1119, 1187, 1691, 1736, 2071
Tru9I	TTAA	7 cut(s)	321, 723, 1119, 1187, 1691, 1736, 2071
TscAI	CASTG	5 cut(s)	464, 1352, 1675, 1730, 1785
TseFI	GTSAC	2 cut(s)	1324, 1666
TseI	GCWGC	7 cut(s)	207, 220, 385, 1433, 1599, 1681, 1909
Tsp45I	GTSAC	2 cut(s)	1324, 1666
TspDTI	ATGAA	7 cut(s)	450, 513, 1154, 1265, 1457, 1748, 1761
TspGWI	ACGGA	1 cut(s)	938
TspRI	CASTG	5 cut(s)	464, 1352, 1675, 1730, 1785
VpaK11BI	GGWCC	2 cut(s)	746, 1171
XapI	RAATTY	3 cut(s)	298, 1755, 2044
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	3 cut(s)	770, 962, 1808
XhoI	CTCGAG	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	1276
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	4 cut(s)	312, 554, 795, 951
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.