Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003165

Physical Location & Seq

Genomic Coordinates Reverse (-)

11825675 .. 11829054

Gene Structure 3380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAAACTGAAATCTGCACTCTAAGAATTGAAATCCACACTCCCTTTAAATATTTTAATAATATTTTCTCTCAACTCTCTTCAAACTTCCTGAAATGCCCTCAGACTTATTCTGTTATTTTTTTCTCCTTTTTCTCTCTTCCTTCTCCAAAGTCCAAACCTCCCCATTTCTCTGAAAACATTCCTTCCTCCAGTCCTCCGCTTTGCTTCATCCCAAAAGCTCCATTTTGGACCAAGCCCAGGGCCCAGCGCTTCATCTCCACGCCGATCGGTGATGGCAGCTTGGATTCCCTACCGGGAAGCTTCGATTGGGCCAGCCACGGTGCCGCTAATGCCACTACTTCGTCTTCTTCTTCTTCTGCGATTGAAAGAGGGTTGTCAAAACCAAAAGGGGGCTATTTGTGCGATTGGATAAAGTCTAGGTTGATTAAGGCTCGAGCCTATTGGGGTTTCGATTCCGGTAATGCTTCCTCAAGTCGATCGGGCCTCGAGTTTCTCTCTATCGTGGTTTCGTTGATATTATTCCCAGCAAACTCAATGCAGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SAM_1

Protein Analysis

183

Amino Acids

20.2

Weight (kDa)

9.42

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45700 AT2G45700 AT3G26680 AT3G26680 AT3G26680 AT3G26680
fragaria_vesca	FvH4_2g36980 FvH4_2g36980 FvH4_2g36980 FvH4_2g36980
prunus_persica	Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1 Prupe.1G401600_v2.0.a1
pyrus_communis	pycom15g04570
rosa_chinensis	RchiOBHm_Chr6g0304781
rosa_laevigata	RLG00000009558 RLG00000010950 RLG00000018503 RLG00000033826
rosa_multiflora	Rmu_sc0003120.1_g000004 Rmu_sc0007437.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010130 Rroxscaffold_5G00359510 Rroxscaffold_7G00163500
rosa_rugosa	Rorug06G0334500
rosa_samantha	Rh1CG059900 Rh1DG063900 Rh4DG405200 Rh6AG132400 Rh6AG446400 Rh6BG129800 Rh6BG455200 Rh6CG128100 Rh6CG459900 Rh6DG115200 Rh6DG446700
rosa_wichuraiana	Rw6G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	323
AciI	CCGC	2 cut(s)	200, 327
AfeI	AGCGCT	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	240, 392
AgsI	TTSAA	3 cut(s)	32, 84, 368
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	3 cut(s)	221, 282, 303
AluI	AGCT	3 cut(s)	221, 282, 303
Ama87I	CYCGRG	2 cut(s)	435, 488
Aor51HI	AGCGCT	1 cut(s)	251
AoxI	GGCC	3 cut(s)	243, 312, 484
ApaI	GGGCCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	5 cut(s)	231, 243, 244, 312, 484
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	2 cut(s)	435, 488
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	297
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	253
BisI	GCNGC	2 cut(s)	280, 327
BlsI	GCNGC	2 cut(s)	281, 328
Bme1390I	CCNGG	2 cut(s)	241, 297
Bme18I	GGWCC	1 cut(s)	231
BmeT110I	CYCGRG	2 cut(s)	435, 488
BmgT120I	GGNCC	5 cut(s)	231, 243, 244, 312, 484
BmiI	GGNNCC	2 cut(s)	245, 325
BmrFI	CCNGG	2 cut(s)	241, 297
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	239, 240, 319
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 392
Bse1I	ACTGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	3 cut(s)	239, 240, 319
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	240, 392
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	192
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	2 cut(s)	246, 526
Bsh1285I	CGRYCG	2 cut(s)	270, 482
BshFI	GGCC	3 cut(s)	245, 314, 486
BshNI	GGYRCC	1 cut(s)	323
BsiEI	CGRYCG	2 cut(s)	270, 482
BsiHKCI	CYCGRG	2 cut(s)	435, 488
BsiSI	CCGG	2 cut(s)	296, 459
BslI	CCNNNNNNNGG	2 cut(s)	240, 392
BsnI	GGCC	3 cut(s)	245, 314, 486
BsoBI	CYCGRG	2 cut(s)	435, 488
Bsp120I	GGGCCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	267, 479
BspACI	CCGC	2 cut(s)	200, 327
BspANI	GGCC	3 cut(s)	245, 314, 486
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	245, 325
BspT107I	GGYRCC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	3 cut(s)	239, 240, 319
BssMI	GATC	2 cut(s)	267, 479
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	85, 144
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	23, 102
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	270, 482
BstMBI	GATC	2 cut(s)	267, 479
BstMCI	CGRYCG	2 cut(s)	270, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 402
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	239, 295
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	245, 314, 486
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	5 cut(s)	231, 243, 244, 312, 484
DdeI	CTNAG	2 cut(s)	23, 102
DpnI	GATC	2 cut(s)	269, 481
DpnII	GATC	2 cut(s)	267, 479
DraI	TTTAAA	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	85, 144
EarI	CTCTTC	2 cut(s)	85, 144
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	251
Eco88I	CYCGRG	2 cut(s)	435, 488
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	280, 327
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	280, 327
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	280, 327
GsaI	CCCAGC	2 cut(s)	250, 530
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	245, 314, 486
HapII	CCGG	2 cut(s)	296, 459
HhaI	GCGC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	2 cut(s)	287, 455
HpaII	CCGG	2 cut(s)	296, 459
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	105, 175
Hpy188III	TCNNGA	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	153, 195
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	18, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 402
HpyF3I	CTNAG	2 cut(s)	23, 102
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	267, 479
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	9 cut(s)	104, 205, 226, 253, 260, 309, 328, 472, 540
Lsp1109I	GCAGC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	420
MalI	GATC	2 cut(s)	269, 481
MboI	GATC	2 cut(s)	267, 479
MboII	GAAGA	6 cut(s)	72, 131, 339, 342, 345, 348
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	7 cut(s)	111, 171, 199, 207, 365, 481, 497
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	3 cut(s)	48, 57, 429
MspI	CCGG	2 cut(s)	296, 459
MspR9I	CCNGG	2 cut(s)	241, 297
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	332, 402
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	267, 479
NlaIV	GGNNCC	2 cut(s)	245, 325
PaeR7I	CTCGAG	2 cut(s)	435, 488
PasI	CCCWGGG	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	287, 455
PkrI	GCNGC	2 cut(s)	281, 328
Ple19I	CGATCG	2 cut(s)	270, 482
Psp6I	CCWGG	1 cut(s)	239
PspFI	CCCAGC	2 cut(s)	246, 526
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	245, 325
PspOMI	GGGCCC	1 cut(s)	243
PspPI	GGNCC	5 cut(s)	231, 243, 244, 312, 484
PspXI	VCTCGAGB	2 cut(s)	435, 488
PvuI	CGATCG	2 cut(s)	270, 482
SaqAI	TTAA	3 cut(s)	48, 57, 429
SatI	GCNGC	2 cut(s)	280, 327
Sau3AI	GATC	2 cut(s)	267, 479
Sau96I	GGNCC	5 cut(s)	231, 243, 244, 312, 484
ScrFI	CCNGG	2 cut(s)	241, 297
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	5 cut(s)	163, 223, 284, 305, 425
Sfr274I	CTCGAG	2 cut(s)	435, 488
SinI	GGWCC	1 cut(s)	231
SlaI	CTCGAG	2 cut(s)	435, 488
SmlI	CTYRAG	3 cut(s)	435, 472, 488
SmoI	CTYRAG	3 cut(s)	435, 472, 488
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	200, 327
SspI	AATATT	2 cut(s)	53, 64
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	239, 295
TaaI	ACNGT	1 cut(s)	323
TaqI	TCGA	5 cut(s)	306, 436, 453, 478, 489
TasI	AATT	1 cut(s)	27
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	287, 455
Tru1I	TTAA	3 cut(s)	48, 57, 429
Tru9I	TTAA	3 cut(s)	48, 57, 429
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	199, 244
VpaK11BI	GGWCC	1 cut(s)	231
XhoI	CTCGAG	2 cut(s)	435, 488
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.