AT3G27740

Carbamoyl-phosphate synthase small chain, CPSase domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10281230 .. 10283935
2706 bp
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UTR
Exon/CDS
Intron
AT3G27740.2

Sequence Viewer

Length: 1293 bp
ATGGCCATGGCAACAAGGACTCTAGGCTTTGTTTTGCCTACGAGCTTATCTTCCCAGCCTTCCTTCGACCGTCGCGGCGGTGGATTTAGGGTTTCTGTCATCCGTTGCTCCACTTCTCCACTCACTTTTCCCACTTCTGGTGTTGTGGAGAAACCTTGGACTTCGTACAATGCTAGGCTTGTGTTAGAAGATGGTTCTATCTGGCCTGCTAAGTCTTTTGGTGCTCCTGGAACCCGTATTGCTGAATTGGTGTTTAACACTTCCTTGACAGGGTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGGCAGTTTGTGCTAATGACAAACCCACAAATTGGTAATACTGGTGTCAATCCTGATGATGAAGAATCTGGGCAATGCTTTCTTACTGGTTTGGTGATAAGAAACCTAAGCATTAGTACCTCAAACTGGAGATGCACGAAGACACTTGCTGATTATCTAACCGAAAGGGACATCATGGGAGTTTATGATCTTGACACTCGAGCAATAACCCGTCGGTTAAGAGAAGATGGTAGTCTTATCGGGGTGTTGAGCACAGAACAGTCCAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTGACAAAACAAACGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAATCCTACAAAGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCATCTTACGGATGTCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCGAGGCGCTGAAAATGAATCCAGATGGGATTTTGTTCAGCAACGGTCCTGGAGACCCTTCTGCTGTGCCATATGCTGTTGAGACAGTTAAAGAGCTTCTCGGTAAAGTCCCTGTTTACGGAATCTGTATGGGCCATCAGTTGCTTGGTCAAGCTTTGGGGGGTAAAACCTTCAAGATGAAGTTTGGTCATCATGGAGGAAACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGAATCACAACTATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTAACACATGTCAATCTCAATGATGGAAGCTGTGCGGGTCTATCTTTCCCGGAAATGAATGTTATGTCACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGA

Protein Analysis

430

Amino Acids

47.06

Weight (kDa)

5.68

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_sm_chain PF00988 60 - 123 4.3e-25 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase PF00117 175 - 349 3.1e-54 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 75, 78, 1091, 1160
AclWI GGATC 2 cut(s) 287, 1091
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 282, 703
AcuI CTGAAG 1 cut(s) 1230
AcyI GRCGYC 1 cut(s) 772
AfaI GTAC 3 cut(s) 167, 424, 1202
AfiI CCNNNNNNNGG 6 cut(s) 137, 270, 338, 432, 663, 944
AflIII ACRYGT 1 cut(s) 1132
AgsI TTSAA 2 cut(s) 697, 1000
AjnI CCWGG 3 cut(s) 226, 874, 1219
AluBI AGCT 8 cut(s) 45, 824, 922, 980, 1103, 1155, 1264, 1287
AluI AGCT 8 cut(s) 45, 824, 922, 980, 1103, 1155, 1264, 1287
Alw21I GWGCWC 3 cut(s) 226, 560, 1075
Alw26I GTCTC 3 cut(s) 603, 873, 902
AlwI GGATC 2 cut(s) 287, 1091
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 3 cut(s) 3, 203, 958
ApeKI GCWGC 1 cut(s) 824
ApoI RAATTY 2 cut(s) 282, 703
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 3 cut(s) 872, 958, 1223
AsuC2I CCSGG 2 cut(s) 1113, 1175
AsuHPI GGTGA 1 cut(s) 412
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 2 cut(s) 872, 1223
BaeI ACNNNNGTAYC 2 cut(s) 1184, 1217
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 3 cut(s) 226, 560, 1075
BbvI GCAGC 1 cut(s) 811
BccI CCATC 6 cut(s) 185, 527, 707, 845, 969, 1142
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 3 cut(s) 228, 876, 1221
BcnI CCSGG 2 cut(s) 1113, 1175
BcoDI GTCTC 3 cut(s) 603, 873, 902
BfaI CTAG 3 cut(s) 23, 174, 297
BfoI RGCGCY 1 cut(s) 836
BisI GCNGC 2 cut(s) 76, 825
BlsI GCNGC 2 cut(s) 77, 826
Bme1390I CCNGG 5 cut(s) 228, 876, 1113, 1175, 1221
Bme18I GGWCC 2 cut(s) 872, 1223
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 3 cut(s) 872, 958, 1223
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 5 cut(s) 228, 876, 1113, 1175, 1221
BmrI ACTGGG 1 cut(s) 1028
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 1028
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 3 cut(s) 454, 897, 1181
Bpu10I CCTNAGC 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 1113, 1175
BsaHI GRCGYC 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 873
BsaJI CCNNGG 4 cut(s) 6, 155, 828, 1219
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 270, 338, 432, 663, 944
Bse1I ACTGG 6 cut(s) 352, 397, 437, 1034, 1057, 1198
Bse3DI GCAATG 1 cut(s) 386
BseBI CCWGG 3 cut(s) 228, 876, 1221
BseDI CCNNGG 4 cut(s) 6, 155, 828, 1219
BseGI GGATG 3 cut(s) 99, 762, 794
BseLI CCNNNNNNNGG 6 cut(s) 137, 270, 338, 432, 663, 944
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 1088
BseNI ACTGG 6 cut(s) 352, 397, 437, 1034, 1057, 1198
BseXI GCAGC 1 cut(s) 811
BseYI CCCAGC 2 cut(s) 54, 305
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 5, 205, 960
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 3 cut(s) 226, 560, 1075
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 1113, 1175
BslFI GGGAC 2 cut(s) 488, 920
BslI CCNNNNNNNGG 6 cut(s) 137, 270, 338, 432, 663, 944
BsmAI GTCTC 3 cut(s) 603, 873, 902
BsmFI GGGAC 2 cut(s) 488, 920
BsnI GGCC 3 cut(s) 5, 205, 960
Bso31I GGTCTC 1 cut(s) 873
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 3 cut(s) 226, 560, 1075
Bsp143I GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 75, 78, 1091, 1160
BspANI GGCC 3 cut(s) 5, 205, 960
BspCNI CTCAG 1 cut(s) 1087
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 2 cut(s) 287, 1091
BspTNI GGTCTC 1 cut(s) 873
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 6 cut(s) 352, 397, 437, 1034, 1057, 1198
BssECI CCNNGG 4 cut(s) 6, 155, 828, 1219
BssMI GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
BssNI GRCGYC 1 cut(s) 772
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 2 cut(s) 6, 155
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 3 cut(s) 228, 876, 1221
Bst4CI ACNGT 5 cut(s) 71, 567, 802, 872, 913
Bst6I CTCTTC 1 cut(s) 1265
BstACI GRCGYC 1 cut(s) 772
BstAPI GCANNNNNTGC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 210, 413, 767, 1074
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 99, 762, 794
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 836
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 6 cut(s) 295, 496, 628, 1068, 1099, 1277
BstMAI GTCTC 3 cut(s) 603, 873, 902
BstMBI GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 316, 830
BstNI CCWGG 3 cut(s) 228, 876, 1221
BstNSI RCATGY 1 cut(s) 1136
BstSCI CCNGG 5 cut(s) 226, 874, 1111, 1173, 1219
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 811
BstV2I GAAGAC 1 cut(s) 452
BsuRI GGCC 3 cut(s) 5, 205, 960
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 99, 762, 794
BtsIMutI CAGTG 2 cut(s) 798, 1075
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 835
Cfr13I GGNCC 3 cut(s) 872, 958, 1223
CseI GACGC 1 cut(s) 780
Csp6I GTAC 3 cut(s) 166, 423, 1201
CviAII CATG 6 cut(s) 7, 481, 606, 645, 1019, 1133
CviQI GTAC 3 cut(s) 166, 423, 1201
DdeI CTNAG 4 cut(s) 210, 413, 767, 1074
DpnI GATC 6 cut(s) 294, 495, 627, 1067, 1098, 1276
DpnII GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1265
EarI CTCTTC 1 cut(s) 1265
Eco130I CCWWGG 2 cut(s) 6, 155
Eco31I GGTCTC 1 cut(s) 873
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 2 cut(s) 872, 1223
Eco57I CTGAAG 1 cut(s) 1230
Eco88I CYCGRG 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 3 cut(s) 226, 874, 1219
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 6, 155
ErhI CCWWGG 2 cut(s) 6, 155
FaeI CATG 6 cut(s) 10, 484, 609, 648, 1022, 1136
FaqI GGGAC 2 cut(s) 488, 920
FatI CATG 6 cut(s) 6, 480, 605, 644, 1018, 1132
FauI CCCGC 1 cut(s) 1153
FauNDI CATATG 1 cut(s) 898
Fnu4HI GCNGC 2 cut(s) 76, 825
FokI GGATG 3 cut(s) 86, 749, 801
Fsp4HI GCNGC 2 cut(s) 76, 825
FspBI CTAG 3 cut(s) 23, 174, 297
GlaI GCGC 1 cut(s) 834
GluI GCNGC 2 cut(s) 76, 825
GsaI CCCAGC 2 cut(s) 58, 309
GsuI CTGGAG 3 cut(s) 454, 897, 1181
HaeII RGCGCY 1 cut(s) 836
HaeIII GGCC 3 cut(s) 5, 205, 960
HapII CCGG 2 cut(s) 1113, 1175
HgaI GACGC 1 cut(s) 780
HhaI GCGC 1 cut(s) 835
Hin1I GRCGYC 1 cut(s) 772
Hin1II CATG 6 cut(s) 10, 484, 609, 648, 1022, 1136
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 1 cut(s) 978
HinfI GANTC 7 cut(s) 19, 371, 750, 844, 948, 1078, 1232
HpaII CCGG 2 cut(s) 1113, 1175
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 3 cut(s) 670, 813, 943
Hpy188I TCNGA 2 cut(s) 1077, 1237
Hpy188III TCNNGA 8 cut(s) 278, 359, 497, 708, 848, 1000, 1229, 1290
Hpy8I GTNNAC 3 cut(s) 670, 813, 943
Hpy99I CGWCG 2 cut(s) 75, 522
HpyAV CCTTC 4 cut(s) 69, 73, 894, 1006
HpyCH4III ACNGT 5 cut(s) 71, 567, 802, 872, 913
HpyCH4V TGCA 2 cut(s) 441, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 830
HpyF3I CTNAG 4 cut(s) 210, 413, 767, 1074
Hsp92I GRCGYC 1 cut(s) 772
Hsp92II CATG 6 cut(s) 10, 484, 609, 648, 1022, 1136
HspAI GCGC 1 cut(s) 833
Kzo9I GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
LmnI GCTCC 3 cut(s) 113, 229, 1292
Lsp1109I GCAGC 1 cut(s) 811
LweI GCATC 1 cut(s) 428
MaeI CTAG 3 cut(s) 23, 174, 297
MaeIII GTNAC 3 cut(s) 1040, 1126, 1191
MalI GATC 6 cut(s) 294, 495, 627, 1067, 1098, 1276
MboI GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
MboII GAAGA 6 cut(s) 42, 200, 380, 457, 542, 1282
MhlI GDGCHC 3 cut(s) 226, 560, 1075
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 245, 282, 336, 703
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 13, 1226
MnlI CCTC 6 cut(s) 436, 823, 1016, 1109, 1225, 1236
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 255, 287, 524, 915
MslI CAYNNNNRTG 1 cut(s) 1086
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 2 cut(s) 1113, 1175
MspR9I CCNGG 5 cut(s) 228, 876, 1113, 1175, 1221
MvaI CCWGG 3 cut(s) 228, 876, 1221
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 316, 830
NciI CCSGG 2 cut(s) 1113, 1175
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 898
NdeII GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
NlaIII CATG 6 cut(s) 10, 484, 609, 648, 1022, 1136
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 1191
NspI RCATGY 1 cut(s) 1136
PaeR7I CTCGAG 1 cut(s) 504
PciI ACATGT 1 cut(s) 1132
PfeI GAWTC 5 cut(s) 371, 750, 844, 948, 1078
PflMI CCANNNNNTGG 1 cut(s) 338
PfoI TCCNGGA 4 cut(s) 226, 874, 1111, 1173
PkrI GCNGC 2 cut(s) 77, 826
PleI GAGTC 2 cut(s) 13, 1226
PpsI GAGTC 2 cut(s) 13, 1226
PscI ACATGT 1 cut(s) 1132
Psp6I CCWGG 3 cut(s) 226, 874, 1219
PspFI CCCAGC 2 cut(s) 54, 305
PspGI CCWGG 3 cut(s) 226, 874, 1219
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 3 cut(s) 872, 958, 1223
PspXI VCTCGAGB 1 cut(s) 504
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 3 cut(s) 167, 424, 1202
RsaNI GTAC 3 cut(s) 166, 423, 1201
RseI CAYNNNNRTG 1 cut(s) 1086
SaqAI TTAA 4 cut(s) 255, 287, 524, 915
SatI GCNGC 2 cut(s) 76, 825
Sau3AI GATC 6 cut(s) 292, 493, 625, 1065, 1096, 1274
Sau96I GGNCC 3 cut(s) 872, 958, 1223
SchI GAGTC 2 cut(s) 13, 1226
ScrFI CCNGG 5 cut(s) 228, 876, 1113, 1175, 1221
SduI GDGCHC 3 cut(s) 226, 560, 1075
SfaNI GCATC 1 cut(s) 428
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 872, 1223
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 4 cut(s) 245, 282, 336, 703
SsiI CCGC 4 cut(s) 75, 78, 1091, 1160
SspMI CTAG 3 cut(s) 23, 174, 297
StyD4I CCNGG 5 cut(s) 226, 874, 1111, 1173, 1219
StyI CCWWGG 2 cut(s) 6, 155
TaaI ACNGT 5 cut(s) 71, 567, 802, 872, 913
TaqI TCGA 3 cut(s) 66, 505, 1277
TasI AATT 4 cut(s) 245, 282, 336, 703
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 5 cut(s) 371, 750, 844, 948, 1078
Tru1I TTAA 4 cut(s) 255, 287, 524, 915
Tru9I TTAA 4 cut(s) 255, 287, 524, 915
TscAI CASTG 2 cut(s) 805, 1075
TseFI GTSAC 1 cut(s) 1191
TseI GCWGC 1 cut(s) 824
Tsp45I GTSAC 1 cut(s) 1191
TspGWI ACGGA 4 cut(s) 92, 798, 801, 960
TspRI CASTG 2 cut(s) 805, 1075
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 872, 1223
XapI RAATTY 2 cut(s) 282, 703
XceI RCATGY 1 cut(s) 1136
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 3 cut(s) 23, 174, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.