Prupe.6G163300_v2.0.a1

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
15581403 .. 15586265
4863 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G163300.1

Sequence Viewer

Length: 1284 bp
ATGGCCACAGCTGCTTTCAACTTAGCTCTAATAAACCCGTCGACTTTCATTCTTCCAAAGTCTCCAAACCCTACAAAGCTTAGGGTTCGCACTCTCAGATGCTCCTCCGCCACCGCAAACGCCGTCCCAGGTTTGTCAGAGGGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATCTGGAGAGCAAAGTCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTATTCAACACATCCTTGACCGGGTATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAATTTGTCCTGATGACAAACCCACATATTGGAAATACTGGTGTGAATTTTGATGATGAAGAATCAAACCAATGCTTCCTTGGTGGTCTAGTGATCAGAAGTATAAGCATCAGTACTTCAAATTGGAGATGTGCAGAAACACTTGGTGATTATTTAGCCGAAAGGAATATCATTGGAATTTATGATGTTGACACACGTGCTATCACCCGCAGACTAAGACAAGATGGAAGCCTTGTTGGTGTTTTGAGCACAGAAGAGTCGAAAACAGATGAGGAATTATTAGAAATGTCTCGTTCATGGGATATTGTGGGGGTCGATTTAATAAGTGGTGTGTCATGCAAGGAACCTTATGAATGGGTGGATAAAACAAATTCAGAGTGGGAATTTAACTACGGTGGAAGAGATGGAAAGGCTTTTCATGTTGTTGCATATGATTTTGGAATCAAACATAACATACTTAGGCGCTTGGCTTCCCATGGCTGTAAAATTACTGTTGTGCCTTCAACATGGCCAGCATCAGAGATTCTTAAGAGGAAACCAGATGGGGTTCTTTTCAGCAATGGCCCTGGAGACCCGTCTGCTGTTCCTTATGCTGTTGAAACAGTCAAGGAGATACTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGTCATCAATTGCTTGGCCAGGCATTAGGTGGTAAAACATTTAAAATGAAGTTTGGTCACCATGGAGGAAATCATCCAGTACGTAATCTTCGTAGTGGACATGTTGAGATCAGTGCTCAGAACCACAACTATGCAGTTGACCCAGCTTCACTTCCAGAAGGTGTAGAAGTCACTCATGTCAATCTCAATGACGGAAGCTGTGCTGGTCTTGCCTATCCTGCACAAAACATCATGTCTCTTCAATACCACCCTGAAGCGTCCCCAGGACCTCGTGATTCAGATTATGCTTTTGGGGAATTCATAAAGCTGATGAAGAAAGTGAAAGTAAATGCATGA

Protein Analysis

428

Amino Acids

46.49

Weight (kDa)

6.19

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 329
AccI GTMKAC 1 cut(s) 41
AciI CCGC 3 cut(s) 108, 114, 508
AcoI YGGCCR 3 cut(s) 3, 809, 964
AcsI RAATTY 7 cut(s) 273, 346, 477, 670, 683, 939, 1244
AcuI CTGAAG 3 cut(s) 141, 201, 1221
AcvI CACGTG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 2 cut(s) 415, 1029
AfiI CCNNNNNNNGG 3 cut(s) 261, 329, 935
AflII CTTAAG 1 cut(s) 827
AflIII ACRYGT 2 cut(s) 494, 1048
AgsI TTSAA 8 cut(s) 19, 179, 189, 247, 420, 804, 899, 1190
AjnI CCWGG 4 cut(s) 127, 865, 966, 1210
AluBI AGCT 6 cut(s) 11, 26, 79, 1094, 1146, 1255
AluI AGCT 6 cut(s) 11, 26, 79, 1094, 1146, 1255
Alw21I GWGCWC 2 cut(s) 551, 1066
Alw26I GTCTC 4 cut(s) 66, 594, 864, 1188
AoxI GGCC 4 cut(s) 3, 809, 862, 964
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 7 cut(s) 273, 346, 477, 670, 683, 939, 1244
AspLEI GCGC 1 cut(s) 765
AspS9I GGNCC 3 cut(s) 143, 863, 1214
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 245, 458, 496, 998
AvaII GGWCC 2 cut(s) 143, 1214
BalI TGGCCA 3 cut(s) 5, 811, 966
BarI GAAGNNNNNNTAC 2 cut(s) 1020, 1052
BauI CACGAG 1 cut(s) 1218
BbrPI CACGTG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 551, 1066
BccI CCATC 4 cut(s) 176, 518, 698, 836
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 4 cut(s) 129, 867, 968, 1212
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 4 cut(s) 66, 594, 864, 1188
BfaI CTAG 3 cut(s) 165, 288, 389
BfoI RGCGCY 1 cut(s) 766
BfrI CTTAAG 1 cut(s) 827
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 5 cut(s) 129, 262, 867, 968, 1212
Bme18I GGWCC 2 cut(s) 143, 1214
BmgT120I GGNCC 3 cut(s) 143, 863, 1214
BmiI GGNNCC 4 cut(s) 144, 223, 645, 927
BmrFI CCNGG 5 cut(s) 129, 262, 867, 968, 1212
BmsI GCATC 4 cut(s) 89, 151, 417, 824
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 2 cut(s) 214, 888
Bpu10I CCTNAGC 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 262
BsaAI YACGTR 2 cut(s) 497, 1031
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 7 cut(s) 127, 146, 379, 775, 865, 1009, 1210
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 329, 935
Bse1I ACTGG 2 cut(s) 343, 1025
Bse3DI GCAATG 1 cut(s) 865
BseBI CCWGG 4 cut(s) 129, 867, 968, 1212
BseDI CCNNGG 7 cut(s) 127, 146, 379, 775, 865, 1009, 1210
BseGI GGATG 2 cut(s) 251, 1021
BseLI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 2 cut(s) 109, 1079
BseNI ACTGG 2 cut(s) 343, 1025
BseRI GAGGAG 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 1090
BsgI GTGCAG 2 cut(s) 453, 1152
BshFI GGCC 4 cut(s) 5, 811, 864, 966
BsiHKAI GWGCWC 2 cut(s) 551, 1066
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 3 cut(s) 110, 156, 1192
BslI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BsmAI GTCTC 4 cut(s) 66, 594, 864, 1188
BsmFI GGGAC 3 cut(s) 110, 156, 1192
BsnI GGCC 4 cut(s) 5, 811, 864, 966
Bso31I GGTCTC 1 cut(s) 864
Bsp1286I GDGCHC 2 cut(s) 551, 1066
Bsp143I GATC 2 cut(s) 393, 1056
Bsp19I CCATGG 2 cut(s) 775, 1009
BspACI CCGC 3 cut(s) 108, 114, 508
BspANI GGCC 4 cut(s) 5, 811, 864, 966
BspCNI CTCAG 2 cut(s) 108, 1078
BspLI GGNNCC 4 cut(s) 144, 223, 645, 927
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 864
BsrDI GCAATG 1 cut(s) 865
BsrI ACTGG 2 cut(s) 343, 1025
BssECI CCNNGG 7 cut(s) 127, 146, 379, 775, 865, 1009, 1210
BssMI GATC 2 cut(s) 393, 1056
BssSI CACGAG 1 cut(s) 1218
BssT1I CCWWGG 4 cut(s) 146, 379, 775, 1009
Bst2BI CACGAG 1 cut(s) 1218
Bst2UI CCWGG 4 cut(s) 129, 867, 968, 1212
Bst4CI ACNGT 3 cut(s) 695, 793, 904
Bst6I CTCTTC 3 cut(s) 549, 694, 1191
BstAFI CTTAAG 1 cut(s) 827
BstBAI YACGTR 2 cut(s) 497, 1031
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 6 cut(s) 22, 80, 95, 515, 758, 1065
BstDSI CCRYGG 2 cut(s) 775, 1009
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 2 cut(s) 251, 1021
BstH2I RGCGCY 1 cut(s) 766
BstHHI GCGC 1 cut(s) 765
BstKTI GATC 2 cut(s) 396, 1059
BstMAI GTCTC 4 cut(s) 66, 594, 864, 1188
BstMBI GATC 2 cut(s) 393, 1056
BstMWI GCNNNNNNNGC 3 cut(s) 11, 1157, 1166
BstNI CCWGG 4 cut(s) 129, 867, 968, 1212
BstNSI RCATGY 1 cut(s) 1052
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 5 cut(s) 127, 260, 865, 966, 1210
BstSNI TACGTA 1 cut(s) 1031
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 4 cut(s) 5, 811, 864, 966
BtgI CCRYGG 2 cut(s) 775, 1009
BtsCI GGATG 2 cut(s) 251, 1021
BtsIMutI CAGTG 1 cut(s) 1066
Cac8I GCNNGC 1 cut(s) 813
CfoI GCGC 1 cut(s) 765
Cfr13I GGNCC 3 cut(s) 143, 863, 1214
CseI GACGC 1 cut(s) 1194
Csp6I GTAC 2 cut(s) 414, 1028
CviQI GTAC 2 cut(s) 414, 1028
DdeI CTNAG 6 cut(s) 22, 80, 95, 515, 758, 1065
DpnI GATC 2 cut(s) 395, 1058
DpnII GATC 2 cut(s) 393, 1056
DraI TTTAAA 1 cut(s) 991
DraIII CACNNNGTG 1 cut(s) 446
EaeI YGGCCR 3 cut(s) 3, 809, 964
Eam1104I CTCTTC 3 cut(s) 549, 694, 1191
EarI CTCTTC 3 cut(s) 549, 694, 1191
EciI GGCGGA 1 cut(s) 97
Eco105I TACGTA 1 cut(s) 1031
Eco130I CCWWGG 4 cut(s) 146, 379, 775, 1009
Eco31I GGTCTC 1 cut(s) 864
Eco47I GGWCC 2 cut(s) 143, 1214
Eco57I CTGAAG 3 cut(s) 141, 201, 1221
Eco72I CACGTG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 1004
EcoO109I RGGNCCY 2 cut(s) 143, 1214
EcoO65I GGTNACC 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 1244
EcoRII CCWGG 4 cut(s) 127, 865, 966, 1210
EcoT14I CCWWGG 4 cut(s) 146, 379, 775, 1009
EcoT22I ATGCAT 1 cut(s) 1282
ErhI CCWWGG 4 cut(s) 146, 379, 775, 1009
FaqI GGGAC 3 cut(s) 110, 156, 1192
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 1 cut(s) 730
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 238, 1008
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 3 cut(s) 165, 288, 389
GlaI GCGC 1 cut(s) 764
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 1094
GsuI CTGGAG 2 cut(s) 214, 888
HaeII RGCGCY 1 cut(s) 766
HaeIII GGCC 4 cut(s) 5, 811, 864, 966
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 1194
HhaI GCGC 1 cut(s) 765
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HincII GTYRAC 3 cut(s) 42, 490, 1087
HindII GTYRAC 3 cut(s) 42, 490, 1087
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 5 cut(s) 362, 557, 741, 823, 1223
HpaII CCGG 1 cut(s) 261
HphI GGTGA 4 cut(s) 245, 458, 496, 998
Hpy166II GTNNAC 4 cut(s) 42, 490, 1046, 1087
Hpy188I TCNGA 8 cut(s) 98, 139, 160, 398, 676, 820, 1068, 1228
Hpy188III TCNNGA 6 cut(s) 193, 219, 269, 310, 1103, 1220
Hpy8I GTNNAC 4 cut(s) 42, 490, 1046, 1087
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 810, 1100
HpyCH4III ACNGT 3 cut(s) 695, 793, 904
HpyCH4IV ACGT 2 cut(s) 496, 1030
HpyCH4V TGCA 7 cut(s) 434, 639, 728, 945, 1082, 1169, 1280
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 1157, 1166
HpyF3I CTNAG 6 cut(s) 22, 80, 95, 515, 758, 1065
HpySE526I ACGT 2 cut(s) 496, 1030
HspAI GCGC 1 cut(s) 763
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 393, 1056
LmnI GCTCC 1 cut(s) 107
LweI GCATC 4 cut(s) 89, 151, 417, 824
MaeI CTAG 3 cut(s) 165, 288, 389
MaeII ACGT 2 cut(s) 496, 1030
MaeIII GTNAC 2 cut(s) 1004, 1117
MalI GATC 2 cut(s) 395, 1058
MboI GATC 2 cut(s) 393, 1056
MboII GAAGA 9 cut(s) 44, 163, 191, 371, 566, 711, 1028, 1178, 1273
MfeI CAATTG 1 cut(s) 956
MhlI GDGCHC 2 cut(s) 551, 1066
MlsI TGGCCA 3 cut(s) 5, 811, 966
MluNI TGGCCA 3 cut(s) 5, 811, 966
MlyI GAGTC 1 cut(s) 566
MnlI CCTC 6 cut(s) 115, 133, 565, 825, 1007, 1227
Mox20I TGGCCA 3 cut(s) 5, 811, 966
Mph1103I ATGCAT 1 cut(s) 1282
MscI TGGCCA 3 cut(s) 5, 811, 966
MseI TTAA 4 cut(s) 620, 687, 828, 990
MslI CAYNNNNRTG 1 cut(s) 1077
Msp20I TGGCCA 3 cut(s) 5, 811, 966
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 5 cut(s) 129, 262, 867, 968, 1212
MunI CAATTG 1 cut(s) 956
MvaI CCWGG 4 cut(s) 129, 867, 968, 1212
MwoI GCNNNNNNNGC 3 cut(s) 11, 1157, 1166
NciI CCSGG 1 cut(s) 262
NcoI CCATGG 2 cut(s) 775, 1009
NdeI CATATG 1 cut(s) 730
NdeII GATC 2 cut(s) 393, 1056
NlaIV GGNNCC 4 cut(s) 144, 223, 645, 927
NmuCI GTSAC 2 cut(s) 1004, 1117
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 1 cut(s) 1052
PciI ACATGT 1 cut(s) 1048
PcsI WCGNNNNNNNCGW 1 cut(s) 1036
PfeI GAWTC 4 cut(s) 362, 741, 823, 1223
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 565
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 2 cut(s) 497, 1031
PpuMI RGGWCCY 2 cut(s) 143, 1214
PscI ACATGT 1 cut(s) 1048
Psp5II RGGWCCY 2 cut(s) 143, 1214
Psp6I CCWGG 4 cut(s) 127, 865, 966, 1210
PspCI CACGTG 1 cut(s) 497
PspEI GGTNACC 1 cut(s) 1004
PspFI CCCAGC 1 cut(s) 1090
PspGI CCWGG 4 cut(s) 127, 865, 966, 1210
PspN4I GGNNCC 4 cut(s) 144, 223, 645, 927
PspPI GGNCC 3 cut(s) 143, 863, 1214
PspPPI RGGWCCY 2 cut(s) 143, 1214
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 415, 1029
RsaNI GTAC 2 cut(s) 414, 1028
RseI CAYNNNNRTG 1 cut(s) 1077
SalI GTCGAC 1 cut(s) 40
SaqAI TTAA 4 cut(s) 620, 687, 828, 990
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 393, 1056
Sau96I GGNCC 3 cut(s) 143, 863, 1214
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 5 cut(s) 129, 262, 867, 968, 1212
SduI GDGCHC 2 cut(s) 551, 1066
SfaNI GCATC 4 cut(s) 89, 151, 417, 824
SinI GGWCC 2 cut(s) 143, 1214
SmiMI CAYNNNNRTG 1 cut(s) 1077
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SnaBI TACGTA 1 cut(s) 1031
SsiI CCGC 3 cut(s) 108, 114, 508
SspMI CTAG 3 cut(s) 165, 288, 389
StyD4I CCNGG 5 cut(s) 127, 260, 865, 966, 1210
StyI CCWWGG 4 cut(s) 146, 379, 775, 1009
TaaI ACNGT 3 cut(s) 695, 793, 904
TaiI ACGT 2 cut(s) 499, 1033
TaqI TCGA 3 cut(s) 41, 560, 615
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 4 cut(s) 362, 741, 823, 1223
Tru1I TTAA 4 cut(s) 620, 687, 828, 990
Tru9I TTAA 4 cut(s) 620, 687, 828, 990
TscAI CASTG 1 cut(s) 1066
TseFI GTSAC 2 cut(s) 1004, 1117
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 1004, 1117
TspDTI ATGAA 8 cut(s) 37, 372, 585, 666, 707, 1010, 1237, 1274
TspGWI ACGGA 1 cut(s) 1155
TspRI CASTG 1 cut(s) 1066
Van91I CCANNNNNTGG 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 143, 1214
XapI RAATTY 7 cut(s) 273, 346, 477, 670, 683, 939, 1244
XceI RCATGY 1 cut(s) 1052
XcmI CCANNNNNNNNNTGG 2 cut(s) 377, 974
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 3 cut(s) 165, 288, 389
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.