Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003046

Physical Location & Seq

Genomic Coordinates Forward (+)

84270772 .. 84273269

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCCACAGCGGCTATCAACTTAGCCCTTGTAAAGCCGTCGCCTTTCTCTGTTCCCAAGCCTCAAAACCCTTCAAGGTATAGGGTTTTCACTCTCCGATGCTCCTCCGCCACCGCCAATGCCGTCTCAGACTTGTCCGAAAGATCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATATGGAGAGCAAAGTCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTATTACAGACCCGAGTTATGCTGGCCAATTTGTCCTGATGACAAACCCCCAAATTGGAAATACTGGTGTAAATTTTGATGATGAAGAATCAAGGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATTATAGATGTGCAGAAACTCTTGGTGATTATTTGGCAAAAAGGAATATCATGGGAATTTATGATGTTGACACACAGGCTATCACTCGCAGATCAAGGCAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAGAGACCAAAACAGATGAGGAACTATTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGCGTGTCATGCAAGACCCCTCATGAGTGGGTTGATAAAACCAATTCTGAGTGGGAATTTATGTCCAAAAGAAAAGATGGAGAGGCTTTTCGTGTTATGATTTTGGAATCAAGAGCAACATACTTAGGCGATTGGCTTCCTATGGCTGCAAAATTACTGTGGTACCTTCAACATGGCCAGCATCAGAGACTCTTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_sm_chain GATase

Protein Analysis

276

Amino Acids

30.75

Weight (kDa)

5.74

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_sm_chain	PF00988	57 - 181	3.3e-45	Carbamoyl-phosphate synthase small chain, CPSase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27740
fragaria_vesca	FvH4_3g43670 FvH4_3g43670 FvH4_5g29030 FvH4_5g29030 FvH4_5g29030
malus_domestica	MD03G1020600.v1.1 MD11G1021800.v1.1 MD15G1342500.v1.1
prunus_persica	Prupe.6G016000_v2.0.a1 Prupe.6G016000_v2.0.a1 Prupe.6G163300_v2.0.a1
pyrus_communis	pycom03g01750 pycom11g01770
rosa_chinensis	RchiOBHm_Chr2g0150151 RchiOBHm_Chr5g0078331
rosa_laevigata	RLG00000020471 RLG00000036765 RLG00000036767
rosa_multiflora	Rmu_sc0000631.1_g000032 Rmu_sc0009445.1_g000001 Rmu_ssc0000020.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003910 Rroxscaffold_1G00003930 Rroxscaffold_2G00097400
rosa_rugosa	Rorug02G0419400 Rorug05G0460000
rosa_samantha	Rh2AG478200 Rh2CG464400 Rh2DG499600 Rh5AG513900 Rh5AG514000 Rh5BG536900 Rh5DG548500
rosa_wichuraiana	Rw2G039040 Rw5G047700 Rw5G047720 Rw5G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	789
AciI	CCGC	3 cut(s)	11, 108, 114
AcoI	YGGCCR	3 cut(s)	3, 298, 802
AcsI	RAATTY	3 cut(s)	346, 477, 683
AcuI	CTGAAG	2 cut(s)	141, 201
AfaI	GTAC	2 cut(s)	415, 791
AfiI	CCNNNNNNNGG	2 cut(s)	261, 329
AflII	CTTAAG	1 cut(s)	820
AgsI	TTSAA	6 cut(s)	75, 179, 189, 247, 420, 797
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	4 cut(s)	130, 551, 594, 808
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	3 cut(s)	3, 298, 802
ApeKI	GCWGC	1 cut(s)	773
ApoI	RAATTY	3 cut(s)	346, 477, 683
Asp718I	GGTACC	1 cut(s)	789
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	245, 458
AvaI	CYCGRG	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	773, 806
BalI	TGGCCA	3 cut(s)	5, 300, 804
BanI	GGYRCC	1 cut(s)	789
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	760
BccI	CCATC	3 cut(s)	176, 518, 698
BceAI	ACGGC	2 cut(s)	22, 107
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	4 cut(s)	130, 551, 594, 808
BfaI	CTAG	2 cut(s)	165, 389
BfrI	CTTAAG	1 cut(s)	820
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	2 cut(s)	12, 774
BlsI	GCNGC	2 cut(s)	13, 775
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	223, 791
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	3 cut(s)	89, 151, 817
BpiI	GAAGAC	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 329
Bse1I	ACTGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	261, 329
BseMII	CTCAG	2 cut(s)	141, 666
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	5, 300, 804
BshNI	GGYRCC	1 cut(s)	789
BsiHKAI	GWGCWC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	261, 329
BsmAI	GTCTC	4 cut(s)	130, 551, 594, 808
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	5, 300, 804
Bso31I	GGTCTC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	3 cut(s)	143, 393, 512
BspACI	CCGC	3 cut(s)	11, 108, 114
BspANI	GGCC	3 cut(s)	5, 300, 804
BspCNI	CTCAG	2 cut(s)	140, 667
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	223, 791
BspT107I	GGYRCC	1 cut(s)	789
BspTI	CTTAAG	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	3 cut(s)	143, 393, 512
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	786
Bst6I	CTCTTC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	298, 806
BstDEI	CTNAG	4 cut(s)	22, 127, 675, 751
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	3 cut(s)	146, 396, 515
BstMAI	GTCTC	4 cut(s)	130, 551, 594, 808
BstMBI	GATC	3 cut(s)	143, 393, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 636
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	760
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	5, 300, 804
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	298, 806
CciI	TCATGA	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	414, 790
CviAII	CATG	5 cut(s)	472, 597, 636, 650, 800
CviQI	GTAC	2 cut(s)	414, 790
DdeI	CTNAG	4 cut(s)	22, 127, 675, 751
DpnI	GATC	3 cut(s)	145, 395, 514
DpnII	GATC	3 cut(s)	143, 393, 512
EaeI	YGGCCR	3 cut(s)	3, 298, 802
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	141, 201
Eco88I	CYCGRG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	5 cut(s)	475, 600, 639, 653, 803
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	5 cut(s)	471, 596, 635, 649, 799
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	12, 774
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	12, 774
FspBI	CTAG	2 cut(s)	165, 389
GluI	GCNGC	2 cut(s)	12, 774
HaeIII	GGCC	3 cut(s)	5, 300, 804
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	5 cut(s)	475, 600, 639, 653, 803
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	362, 734, 816
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	245, 458
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	7 cut(s)	98, 130, 139, 160, 398, 676, 813
Hpy188III	TCNNGA	5 cut(s)	219, 269, 310, 650, 738
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	81, 803
HpyCH4III	ACNGT	1 cut(s)	786
HpyCH4V	TGCA	3 cut(s)	434, 639, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 636
HpyF3I	CTNAG	4 cut(s)	22, 127, 675, 751
Hsp92II	CATG	5 cut(s)	475, 600, 639, 653, 803
KpnI	GGTACC	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	143, 393, 512
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	7 cut(s)	204, 274, 282, 323, 324, 482, 818
Lsp1109I	GCAGC	1 cut(s)	760
LweI	GCATC	3 cut(s)	89, 151, 817
MaeI	CTAG	2 cut(s)	165, 389
MalI	GATC	3 cut(s)	145, 395, 514
MboI	GATC	3 cut(s)	143, 393, 512
MboII	GAAGA	4 cut(s)	163, 191, 371, 566
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	551
MlsI	TGGCCA	3 cut(s)	5, 300, 804
MluCI	AATT	9 cut(s)	273, 302, 327, 346, 421, 477, 670, 683, 779
MluNI	TGGCCA	3 cut(s)	5, 300, 804
MlyI	GAGTC	1 cut(s)	810
MnlI	CCTC	5 cut(s)	72, 115, 565, 657, 703
Mox20I	TGGCCA	3 cut(s)	5, 300, 804
MscI	TGGCCA	3 cut(s)	5, 300, 804
MseI	TTAA	3 cut(s)	404, 620, 821
Msp20I	TGGCCA	3 cut(s)	5, 300, 804
MspA1I	CMGCKG	1 cut(s)	11
MspCI	CTTAAG	1 cut(s)	820
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	11, 636
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	3 cut(s)	143, 393, 512
NlaIII	CATG	5 cut(s)	475, 600, 639, 653, 803
NlaIV	GGNNCC	2 cut(s)	223, 791
PagI	TCATGA	1 cut(s)	649
PfeI	GAWTC	2 cut(s)	362, 734
PkrI	GCNGC	2 cut(s)	13, 775
PleI	GAGTC	1 cut(s)	810
PpsI	GAGTC	1 cut(s)	810
PspN4I	GGNNCC	2 cut(s)	223, 791
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	2 cut(s)	415, 791
RsaNI	GTAC	2 cut(s)	414, 790
SaqAI	TTAA	3 cut(s)	404, 620, 821
SatI	GCNGC	2 cut(s)	12, 774
Sau3AI	GATC	3 cut(s)	143, 393, 512
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	810
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	2 cut(s)	80, 795
SfaNI	GCATC	3 cut(s)	89, 151, 817
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	9 cut(s)	273, 302, 327, 346, 421, 477, 670, 683, 779
SsiI	CCGC	3 cut(s)	11, 108, 114
SspMI	CTAG	2 cut(s)	165, 389
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	786
TasI	AATT	9 cut(s)	273, 302, 327, 346, 421, 477, 670, 683, 779
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	362, 734
Tru1I	TTAA	3 cut(s)	404, 620, 821
Tru9I	TTAA	3 cut(s)	404, 620, 821
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	1 cut(s)	773
TspDTI	ATGAA	2 cut(s)	372, 585
TspRI	CASTG	1 cut(s)	377
Vha464I	CTTAAG	1 cut(s)	820
XapI	RAATTY	3 cut(s)	346, 477, 683
XspI	CTAG	2 cut(s)	165, 389
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.