Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003046

Physical Location & Seq

Genomic Coordinates Forward (+)

69772156 .. 69775893

Gene Structure 3738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG478200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCACAGCAGCTATCAACGTTAAGCCGTCGCCTTTCTGTGTTCCCAAGCCTCAAAACCCTTCAAAGCTTAGGGTTTTCACTCTCCGATGCTCCTCCGCCACCGCTAATGCCGTCTCAGACTTGGTCGAAAGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATATGGAGAGCAAAGTCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTATTACAGACCCGAGTTATGCTGGCCAATTTGTCCTGATGACAAACCCCCAAATTGGAAATACTGGTGTAAATTTTGATGATGAAGAATCAAGGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATTATAGATGTTCAAAAACTCTTGGTGATTATTTAGCAAAACGGAATATCATGGGAATTTATGATGTTGACACGCGGGCTATCACCCGCAGATTAAGGCAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAGAGACCAAAACAGATGAGGAACTGTTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGCGTGTCATGCAAGACCCCTCATGAGTGGGTTGATAAAACCGATTCTGAGTGGGAATTTATGTCCAATAGAAAAGATAAAGAGGCTTTTCGTGTTGTTGCATATGATTTTGGAATCAAGAGCAACATACTTAGGCGATTGGCTTCCTATGGCTGCAAAATTACTGTGGTACCTTCAACATGGCCAGCATCAGAGACTCTTAAGATGAAACCAGATGGGGTTCTTTTCAGCAATGGCCCCGGAGACCCATCTGCGGTTCCCTATGCTGTTGAAACGGTCAAGGAGATTCTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGCCATCAGTTGCTTGGCTTGGCATTAGGCGGTGCAACTTTTAAAATGAAGTTCGGTCACCACGGAGGAAATCATCCAGTCCGTAATCTTCGTACTGGAGATGTTGAGATAAGCGCTCAGGTGTGTAAATTCTATCAATCTCTCTTTTGTAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_sm_chain GATase

Protein Analysis

365

Amino Acids

40.18

Weight (kDa)

8.3

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_sm_chain	PF00988	54 - 178	1.8e-47	Carbamoyl-phosphate synthase small chain, CPSase domain
GATase	PF00117	240 - 345	2.5e-33	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27740
fragaria_vesca	FvH4_3g43670 FvH4_3g43670 FvH4_5g29030 FvH4_5g29030 FvH4_5g29030
malus_domestica	MD03G1020600.v1.1 MD11G1021800.v1.1 MD15G1342500.v1.1
prunus_persica	Prupe.6G016000_v2.0.a1 Prupe.6G016000_v2.0.a1 Prupe.6G163300_v2.0.a1
pyrus_communis	pycom03g01750 pycom11g01770
rosa_chinensis	RchiOBHm_Chr2g0150151 RchiOBHm_Chr5g0078331
rosa_laevigata	RLG00000020471 RLG00000036765 RLG00000036767
rosa_multiflora	Rmu_sc0000631.1_g000032 Rmu_sc0009445.1_g000001 Rmu_ssc0000020.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003910 Rroxscaffold_1G00003930 Rroxscaffold_2G00097400
rosa_rugosa	Rorug02G0419400 Rorug05G0460000
rosa_samantha	Rh2AG478200 Rh2CG464400 Rh2DG499600 Rh5AG513900 Rh5AG514000 Rh5BG536900 Rh5DG548500
rosa_wichuraiana	Rw2G039040 Rw5G047700 Rw5G047720 Rw5G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	787
AccII	CGCG	1 cut(s)	487
AciI	CCGC	6 cut(s)	99, 105, 487, 499, 872, 969
AclI	AACGTT	1 cut(s)	21
AcoI	YGGCCR	3 cut(s)	3, 289, 800
AcsI	RAATTY	5 cut(s)	337, 468, 674, 930, 1067
AcuI	CTGAAG	2 cut(s)	132, 192
AfaI	GTAC	3 cut(s)	406, 789, 1033
AfeI	AGCGCT	1 cut(s)	1054
AfiI	CCNNNNNNNGG	4 cut(s)	252, 320, 871, 926
AflII	CTTAAG	1 cut(s)	818
AgsI	TTSAA	8 cut(s)	66, 170, 180, 238, 411, 426, 795, 890
AluBI	AGCT	2 cut(s)	14, 70
AluI	AGCT	2 cut(s)	14, 70
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	5 cut(s)	121, 542, 585, 806, 855
Ama87I	CYCGRG	1 cut(s)	277
Aor51HI	AGCGCT	1 cut(s)	1054
AoxI	GGCC	5 cut(s)	3, 289, 800, 853, 940
ApeKI	GCWGC	2 cut(s)	11, 771
ApoI	RAATTY	5 cut(s)	337, 468, 674, 930, 1067
Asp718I	GGTACC	1 cut(s)	787
AspLEI	GCGC	1 cut(s)	1055
AspS9I	GGNCC	2 cut(s)	854, 940
AsuC2I	CCSGG	2 cut(s)	253, 858
AsuHPI	GGTGA	4 cut(s)	236, 449, 487, 989
AvaI	CYCGRG	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BalI	TGGCCA	3 cut(s)	5, 291, 802
BanI	GGYRCC	1 cut(s)	787
BarI	GAAGNNNNNNTAC	2 cut(s)	391, 423
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	23, 758
BccI	CCATC	5 cut(s)	167, 509, 827, 874, 951
BceAI	ACGGC	2 cut(s)	13, 98
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	253, 858
BcoDI	GTCTC	5 cut(s)	121, 542, 585, 806, 855
BfaI	CTAG	2 cut(s)	156, 380
BfoI	RGCGCY	1 cut(s)	1056
BfrI	CTTAAG	1 cut(s)	818
BisI	GCNGC	2 cut(s)	12, 772
BlsI	GCNGC	2 cut(s)	13, 773
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	253, 858
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	854, 940
BmiI	GGNNCC	5 cut(s)	214, 789, 856, 876, 918
BmrFI	CCNGG	2 cut(s)	253, 858
BmsI	GCATC	3 cut(s)	80, 142, 815
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	1056
Bpu10I	CCTNAGC	2 cut(s)	71, 1056
BpuMI	CCSGG	2 cut(s)	253, 858
BsaI	GGTCTC	2 cut(s)	542, 855
BsaJI	CCNNGG	4 cut(s)	137, 370, 856, 1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 320, 871, 926
Bse1I	ACTGG	3 cut(s)	334, 1016, 1039
Bse3DI	GCAATG	1 cut(s)	856
BseDI	CCNNGG	4 cut(s)	137, 370, 856, 1000
BseGI	GGATG	2 cut(s)	242, 1012
BseLI	CCNNNNNNNGG	4 cut(s)	252, 320, 871, 926
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	3 cut(s)	132, 657, 1070
BseNI	ACTGG	3 cut(s)	334, 1016, 1039
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	23, 758
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	5 cut(s)	5, 291, 802, 855, 942
BshNI	GGYRCC	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	252, 858
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	4 cut(s)	252, 320, 871, 926
BsmAI	GTCTC	5 cut(s)	121, 542, 585, 806, 855
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	5 cut(s)	5, 291, 802, 855, 942
Bso31I	GGTCTC	2 cut(s)	542, 855
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	1 cut(s)	384
BspACI	CCGC	6 cut(s)	99, 105, 487, 499, 872, 969
BspANI	GGCC	5 cut(s)	5, 291, 802, 855, 942
BspCNI	CTCAG	3 cut(s)	131, 658, 1069
BspFNI	CGCG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	5 cut(s)	214, 789, 856, 876, 918
BspT107I	GGYRCC	1 cut(s)	787
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	2 cut(s)	542, 855
BsrDI	GCAATG	1 cut(s)	856
BsrI	ACTGG	3 cut(s)	334, 1016, 1039
BssECI	CCNNGG	4 cut(s)	137, 370, 856, 1000
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	137, 370
Bst4CI	ACNGT	3 cut(s)	570, 784, 895
Bst6I	CTCTTC	1 cut(s)	540
BstAFI	CTTAAG	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	289, 489, 804
BstDEI	CTNAG	5 cut(s)	71, 118, 666, 749, 1056
BstDSI	CCRYGG	1 cut(s)	1000
BstEII	GGTNACC	1 cut(s)	995
BstF5I	GGATG	2 cut(s)	242, 1012
BstFNI	CGCG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	1056
BstHHI	GCGC	1 cut(s)	1055
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	5 cut(s)	121, 542, 585, 806, 855
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 627
BstPI	GGTNACC	1 cut(s)	995
BstSCI	CCNGG	2 cut(s)	251, 856
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	23, 758
BstV2I	GAAGAC	1 cut(s)	149
BsuRI	GGCC	5 cut(s)	5, 291, 802, 855, 942
BtgI	CCRYGG	1 cut(s)	1000
BtsCI	GGATG	2 cut(s)	242, 1012
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	368
Cac8I	GCNNGC	3 cut(s)	289, 489, 804
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	1055
Cfr13I	GGNCC	2 cut(s)	854, 940
Csp6I	GTAC	3 cut(s)	405, 788, 1032
CviAII	CATG	6 cut(s)	463, 588, 627, 641, 798, 937
CviQI	GTAC	3 cut(s)	405, 788, 1032
DdeI	CTNAG	5 cut(s)	71, 118, 666, 749, 1056
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
DraI	TTTAAA	1 cut(s)	982
EaeI	YGGCCR	3 cut(s)	3, 289, 800
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	137, 370
Eco31I	GGTCTC	2 cut(s)	542, 855
Eco47III	AGCGCT	1 cut(s)	1054
Eco57I	CTGAAG	2 cut(s)	132, 192
Eco88I	CYCGRG	1 cut(s)	277
Eco91I	GGTNACC	1 cut(s)	995
EcoO65I	GGTNACC	1 cut(s)	995
EcoT14I	CCWWGG	2 cut(s)	137, 370
ErhI	CCWWGG	2 cut(s)	137, 370
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	6 cut(s)	466, 591, 630, 644, 801, 940
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	6 cut(s)	462, 587, 626, 640, 797, 936
FauI	CCCGC	2 cut(s)	480, 506
FauNDI	CATATG	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	12, 772
FokI	GGATG	2 cut(s)	229, 999
Fsp4HI	GCNGC	2 cut(s)	12, 772
FspBI	CTAG	2 cut(s)	156, 380
GlaI	GCGC	1 cut(s)	1054
GluI	GCNGC	2 cut(s)	12, 772
GsuI	CTGGAG	1 cut(s)	1056
HaeII	RGCGCY	1 cut(s)	1056
HaeIII	GGCC	5 cut(s)	5, 291, 802, 855, 942
HapII	CCGG	2 cut(s)	252, 858
HhaI	GCGC	1 cut(s)	1055
Hin1II	CATG	6 cut(s)	466, 591, 630, 644, 801, 940
Hin6I	GCGC	1 cut(s)	1053
HinP1I	GCGC	1 cut(s)	1053
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	5 cut(s)	353, 662, 732, 814, 904
HpaII	CCGG	2 cut(s)	252, 858
HphI	GGTGA	4 cut(s)	236, 449, 487, 989
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	6 cut(s)	89, 121, 151, 389, 667, 811
Hpy188III	TCNNGA	5 cut(s)	210, 260, 301, 641, 736
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	72, 801
HpyCH4III	ACNGT	3 cut(s)	570, 784, 895
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	5 cut(s)	630, 719, 774, 936, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 627
HpyF3I	CTNAG	5 cut(s)	71, 118, 666, 749, 1056
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	466, 591, 630, 644, 801, 940
HspAI	GCGC	1 cut(s)	1053
KpnI	GGTACC	1 cut(s)	791
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	23, 758
LweI	GCATC	3 cut(s)	80, 142, 815
MaeI	CTAG	2 cut(s)	156, 380
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	995
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	5 cut(s)	154, 182, 362, 557, 1019
MhlI	GDGCHC	1 cut(s)	542
MlsI	TGGCCA	3 cut(s)	5, 291, 802
MluNI	TGGCCA	3 cut(s)	5, 291, 802
MlyI	GAGTC	1 cut(s)	808
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	6 cut(s)	63, 106, 556, 648, 694, 998
Mox20I	TGGCCA	3 cut(s)	5, 291, 802
MscI	TGGCCA	3 cut(s)	5, 291, 802
MseI	TTAA	6 cut(s)	24, 395, 506, 611, 819, 981
Msp20I	TGGCCA	3 cut(s)	5, 291, 802
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	2 cut(s)	252, 858
MspR9I	CCNGG	2 cut(s)	253, 858
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	2 cut(s)	11, 627
NciI	CCSGG	2 cut(s)	253, 858
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	6 cut(s)	466, 591, 630, 644, 801, 940
NlaIV	GGNNCC	5 cut(s)	214, 789, 856, 876, 918
NmuCI	GTSAC	1 cut(s)	995
PagI	TCATGA	1 cut(s)	640
PfeI	GAWTC	4 cut(s)	353, 662, 732, 904
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	13, 773
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
Psp1406I	AACGTT	1 cut(s)	21
PspEI	GGTNACC	1 cut(s)	995
PspN4I	GGNNCC	5 cut(s)	214, 789, 856, 876, 918
PspPI	GGNCC	2 cut(s)	854, 940
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	3 cut(s)	406, 789, 1033
RsaNI	GTAC	3 cut(s)	405, 788, 1032
SaqAI	TTAA	6 cut(s)	24, 395, 506, 611, 819, 981
SatI	GCNGC	2 cut(s)	12, 772
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	2 cut(s)	854, 940
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	808
ScrFI	CCNGG	2 cut(s)	253, 858
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	7 cut(s)	16, 24, 72, 139, 793, 918, 1062
SfaNI	GCATC	3 cut(s)	80, 142, 815
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SsiI	CCGC	6 cut(s)	99, 105, 487, 499, 872, 969
SspMI	CTAG	2 cut(s)	156, 380
StyD4I	CCNGG	2 cut(s)	251, 856
StyI	CCWWGG	2 cut(s)	137, 370
TaaI	ACNGT	3 cut(s)	570, 784, 895
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	983
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	4 cut(s)	353, 662, 732, 904
Tru1I	TTAA	6 cut(s)	24, 395, 506, 611, 819, 981
Tru9I	TTAA	6 cut(s)	24, 395, 506, 611, 819, 981
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	995
TseI	GCWGC	2 cut(s)	11, 771
Tsp45I	GTSAC	1 cut(s)	995
TspDTI	ATGAA	4 cut(s)	363, 576, 839, 1001
TspGWI	ACGGA	3 cut(s)	469, 1010, 1017
TspRI	CASTG	1 cut(s)	368
Tth111I	GACNNNGTC	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	818
XapI	RAATTY	5 cut(s)	337, 468, 674, 930, 1067
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XspI	CTAG	2 cut(s)	156, 380
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.